org.mzd.shap.analysis.hmmer.bean.GlobalHit.java Source code

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Here is the source code for org.mzd.shap.analysis.hmmer.bean.GlobalHit.java

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/**
 *
 * Copyright 2010 Matthew Z DeMaere.
 * 
 * This file is part of SHAP.
 *
 * SHAP is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 * 
 * SHAP is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with SHAP.  If not, see <http://www.gnu.org/licenses/>.
 * 
 */
package org.mzd.shap.analysis.hmmer.bean;

import org.apache.commons.lang.builder.EqualsBuilder;
import org.apache.commons.lang.builder.ToStringBuilder;
import org.apache.commons.lang.builder.ToStringStyle;

import com.thoughtworks.xstream.annotations.XStreamAlias;

@XStreamAlias("hit")
public class GlobalHit {
    @XStreamAlias("model")
    private String model;
    @XStreamAlias("description")
    private String description;
    @XStreamAlias("score")
    private Double score;
    @XStreamAlias("evalue")
    private Double evalue;
    @XStreamAlias("ndom")
    private Integer ndom;

    public GlobalHit() {
        /*...*/}

    public GlobalHit(String model, String description, Double score, Double evalue, Integer ndom) {
        this.model = model;
        this.description = description;
        this.score = score;
        this.evalue = evalue;
        this.ndom = ndom;
    }

    @Override
    public String toString() {
        return new ToStringBuilder(this, ToStringStyle.MULTI_LINE_STYLE).append("model", getModel())
                .append("description", getDescription()).append("evalue", getEvalue()).append("ndom", getNdom())
                .append("score", getScore()).toString();
    }

    @Override
    public boolean equals(Object obj) {
        if (obj instanceof GlobalHit == false) {
            return false;
        }
        if (obj == this) {
            return true;
        }

        GlobalHit rhs = (GlobalHit) obj;
        return new EqualsBuilder().append(getModel(), rhs.getModel()).append(getDescription(), rhs.getDescription())
                .append(getScore(), rhs.getScore()).append(getEvalue(), rhs.getEvalue())
                .append(getNdom(), rhs.getNdom()).isEquals();
    }

    public String getDescription() {
        return description;
    }

    public void setDescription(String description) {
        this.description = description;
    }

    public Double getEvalue() {
        return evalue;
    }

    public void setEvalue(Double evalue) {
        this.evalue = evalue;
    }

    public String getModel() {
        return model;
    }

    public void setModel(String model) {
        this.model = model;
    }

    public Integer getNdom() {
        return ndom;
    }

    public void setNdom(Integer ndom) {
        this.ndom = ndom;
    }

    public Double getScore() {
        return score;
    }

    public void setScore(Double score) {
        this.score = score;
    }
}