org.mzd.shap.analysis.hmmer.bean.Result.java Source code

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Here is the source code for org.mzd.shap.analysis.hmmer.bean.Result.java

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/**
 *
 * Copyright 2010 Matthew Z DeMaere.
 * 
 * This file is part of SHAP.
 *
 * SHAP is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 * 
 * SHAP is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with SHAP.  If not, see <http://www.gnu.org/licenses/>.
 * 
 */
package org.mzd.shap.analysis.hmmer.bean;

import java.util.ArrayList;
import java.util.List;

import org.apache.commons.lang.builder.EqualsBuilder;
import org.apache.commons.lang.builder.ToStringBuilder;
import org.apache.commons.lang.builder.ToStringStyle;

import com.thoughtworks.xstream.annotations.XStreamAlias;

@XStreamAlias("result")
public class Result {
    @XStreamAlias("query")
    private Query query;
    @XStreamAlias("global-hits")
    private List<GlobalHit> globalHits;
    @XStreamAlias("domain-hits")
    private List<DomainHit> domainHits;

    public Result() {
        this(null, new ArrayList<GlobalHit>(), new ArrayList<DomainHit>());
    }

    public Result(String database, Query query) {
        this(query, new ArrayList<GlobalHit>(), new ArrayList<DomainHit>());
    }

    public Result(Query query, List<GlobalHit> globalHits, List<DomainHit> domainHits) {
        this.query = query;
        this.globalHits = globalHits;
        this.domainHits = domainHits;
    }

    @Override
    public String toString() {
        return new ToStringBuilder(this, ToStringStyle.MULTI_LINE_STYLE).append("query", getQuery())
                .append("globalHits", getGlobalHits()).append("domainHits", getDomainHits()).toString();
    }

    @Override
    public boolean equals(Object obj) {
        if (obj instanceof Result == false) {
            return false;
        }

        if (obj == this) {
            return true;
        }

        Result rhs = (Result) obj;
        return new EqualsBuilder().append(getQuery(), rhs.getQuery()).append(getGlobalHits(), rhs.getGlobalHits())
                .append(getDomainHits(), rhs.getDomainHits()).isEquals();
    }

    public List<GlobalHit> getGlobalHits() {
        return globalHits;
    }

    public void setGlobalHits(List<GlobalHit> globalHits) {
        this.globalHits = globalHits;
    }

    public void addGlobalHits(GlobalHit globalHit) {
        getGlobalHits().add(globalHit);
    }

    public List<DomainHit> getDomainHits() {
        return domainHits;
    }

    public void setDomainHits(List<DomainHit> domainHits) {
        this.domainHits = domainHits;
    }

    public void addDomainHits(DomainHit domainHits) {
        getDomainHits().add(domainHits);
    }

    public Query getQuery() {
        return query;
    }

    public void setQuery(Query query) {
        this.query = query;
    }
}