org.oncoblocks.centromere.mongodb.GenericMongoRepository.java Source code

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/*
 * Copyright 2015 William Oemler, Blueprint Medicines
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package org.oncoblocks.centromere.mongodb;

import com.google.common.reflect.TypeToken;
import com.mongodb.BasicDBObject;
import com.mongodb.DBCollection;
import com.mongodb.DBObject;
import org.oncoblocks.centromere.core.model.Model;
import org.oncoblocks.centromere.core.repository.QueryCriteria;
import org.oncoblocks.centromere.core.repository.RepositoryOperations;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.data.domain.Page;
import org.springframework.data.domain.PageImpl;
import org.springframework.data.domain.Pageable;
import org.springframework.data.domain.Sort;
import org.springframework.data.mongodb.core.MongoOperations;
import org.springframework.data.mongodb.core.query.Criteria;
import org.springframework.data.mongodb.core.query.Query;
import org.springframework.util.Assert;

import java.io.Serializable;
import java.util.ArrayList;
import java.util.List;

/**
 * Generic MongoDB implementation of {@link RepositoryOperations}.  Includes all of the methods 
 *   from Spring Data's {@link org.springframework.data.repository.PagingAndSortingRepository}, 
 *   as well as some additional methods that support dynamic query generation.
 * 
 * @author woemler
 */
public class GenericMongoRepository<T extends Model<ID>, ID extends Serializable>
        implements RepositoryOperations<T, ID> {

    private final MongoOperations mongoOperations;
    private final Class<T> model;
    private static final Logger logger = LoggerFactory.getLogger(GenericMongoRepository.class);

    /**
     * Creates a new {@link GenericMongoRepository} instance.
     * @param mongoOperations {@link MongoOperations}
     * @param model class implementing {@link Model}
     */
    public GenericMongoRepository(MongoOperations mongoOperations, Class<T> model) {
        Assert.notNull(mongoOperations);
        Assert.notNull(model);
        this.mongoOperations = mongoOperations;
        this.model = model;
    }

    public GenericMongoRepository(MongoOperations mongoOperations) {
        Assert.notNull(mongoOperations);
        this.mongoOperations = mongoOperations;
        TypeToken<T> typeToken = new TypeToken<T>(getClass()) {
        };
        model = (Class<T>) typeToken.getRawType();
    }

    /**
     * {@link RepositoryOperations#findOne}
     */
    public T findOne(ID id) {
        return mongoOperations.findById(id, model);
    }

    /**
     * {@link RepositoryOperations#exists}
     */
    public boolean exists(ID id) {
        return mongoOperations.findById(id, model) != null;
    }

    /**
     * {@link RepositoryOperations#findAll}
     */
    public List<T> findAll() {
        return mongoOperations.findAll(model);
    }

    /**
     * {@link RepositoryOperations#findAll}
     */
    public List<T> findAll(Sort sort) {
        return mongoOperations.find(new Query().with(sort), model);
    }

    /**
     * {@link org.springframework.data.repository.PagingAndSortingRepository#findAll(Iterable)}
     */
    public List<T> findAll(Iterable<ID> iterable) {
        List<T> found = new ArrayList<>();
        for (ID id : iterable) {
            found.add(this.findOne(id));
        }
        return found;
    }

    /**
     * {@link RepositoryOperations#findAll}
     */
    public Page<T> findAll(Pageable pageable) {
        List<T> entities = mongoOperations.find(new Query().with(pageable), model);
        long count = count();
        return new PageImpl<T>(entities, pageable, count);
    }

    /**
     * {@link RepositoryOperations#findAll}
     */
    public List<T> find(Iterable<QueryCriteria> queryCriterias) {
        Criteria criteria = MongoQueryUtils.getQueryFromQueryCriteria(queryCriterias);
        Query query = new Query();
        if (criteria != null) {
            query.addCriteria(criteria);
        }
        return mongoOperations.find(query, model);
    }

    /**
     * {@link RepositoryOperations#findAll}
     */
    public List<T> find(Iterable<QueryCriteria> queryCriterias, Sort sort) {
        Criteria criteria = MongoQueryUtils.getQueryFromQueryCriteria(queryCriterias);
        Query query = new Query();
        if (criteria != null) {
            query.addCriteria(criteria);
        }
        return mongoOperations.find(query.with(sort), model);
    }

    /**
     * {@link RepositoryOperations#findAll}
     */
    public Page<T> find(Iterable<QueryCriteria> queryCriterias, Pageable pageable) {
        Criteria criteria = MongoQueryUtils.getQueryFromQueryCriteria(queryCriterias);
        Query query = new Query();
        if (criteria != null) {
            query.addCriteria(criteria);
        }
        List<T> entities = mongoOperations.find(query.with(pageable), model);
        long count = count(queryCriterias);
        return new PageImpl<T>(entities, pageable, count);
    }

    /**
     * {@link RepositoryOperations#distinct(String)}
     */
    public List<Object> distinct(String field) {
        return mongoOperations.getCollection(mongoOperations.getCollectionName(model)).distinct(field);
    }

    /**
     * {@link RepositoryOperations#distinct(String, Iterable)}
     */
    public List<Object> distinct(String field, Iterable<QueryCriteria> queryCriterias) {
        Criteria criteria = MongoQueryUtils.getQueryFromQueryCriteria(queryCriterias);
        Query query = new Query();
        if (criteria != null) {
            query.addCriteria(criteria);
        }
        return mongoOperations.getCollection(mongoOperations.getCollectionName(model)).distinct(field,
                query.getQueryObject());
    }

    /**
     * {@link RepositoryOperations#insert}
     */
    public <S extends T> S insert(S s) {
        mongoOperations.insert(s);
        return s;
    }

    /**
     * {@link RepositoryOperations#insert}
     */
    public <S extends T> List<S> insert(Iterable<S> entities) {
        List<S> entityList = iterableToList(entities);
        mongoOperations.insertAll(entityList);
        return entityList;
    }

    /**
     * {@link RepositoryOperations#update}
     */
    public <S extends T> S update(S s) {
        if (exists(s.getId())) {
            mongoOperations.save(s);
            return s;
        }
        return null;
    }

    /**
     * {@link RepositoryOperations#update}
     */
    public <S extends T> List<S> update(Iterable<S> entities) {
        List<S> updated = new ArrayList<>();
        for (S entity : entities) {
            entity = this.update(entity);
            if (entity != null)
                updated.add(entity);
        }
        return updated;
    }

    /**
     * {@link org.springframework.data.repository.PagingAndSortingRepository#save(Object)}    */
    public <S extends T> S save(S s) {
        if (this.exists(s.getId())) {
            return this.update(s);
        } else {
            return this.insert(s);
        }
    }

    /**
     * {@link org.springframework.data.repository.PagingAndSortingRepository#save(Iterable)}
     */
    public <S extends T> List<S> save(Iterable<S> iterable) {
        List<S> saved = new ArrayList<>();
        for (S s : iterable) {
            saved.add(this.save(s));
        }
        return saved;
    }

    /**
     * {@link RepositoryOperations#count}
     */
    public long count() {
        return mongoOperations.count(new Query(), model);
    }

    /**
     * {@link RepositoryOperations#count}
     */
    public long count(Iterable<QueryCriteria> queryCriterias) {
        Criteria criteria = MongoQueryUtils.getQueryFromQueryCriteria(queryCriterias);
        Query query = new Query();
        if (criteria != null) {
            query.addCriteria(criteria);
        }
        return mongoOperations.count(query, model);
    }

    /**
     * {@link RepositoryOperations#delete}
     */
    public void delete(ID id) {
        mongoOperations.findAndRemove(Query.query(Criteria.where("_id").is(id)), model);
    }

    /**
     * {@link RepositoryOperations#deleteAll}
     */
    public void deleteAll() {
        mongoOperations.remove(new Query(), model);
    }

    /**
     * {@link org.springframework.data.repository.PagingAndSortingRepository#delete(Object)}
     */
    public void delete(T t) {
        this.delete(t.getId());
    }

    /**
     * {@link org.springframework.data.repository.PagingAndSortingRepository#delete(Iterable)}
     */
    public void delete(Iterable<? extends T> iterable) {
        for (T t : iterable) {
            this.delete(t.getId());
        }
    }

    /**
     * Drops the entity model collection.
     */
    public void dropCollection() {
        mongoOperations.dropCollection(model);
    }

    /**
     * Creates a collections for the entity model.
     */
    public void createCollection() {
        mongoOperations.createCollection(model);
    }

    /**
     * Creates an index on the desired field in the target collection.
     * 
     * @param field
     * @param direction
     * @param isUnique
     * @param isSparse
     */
    public void createIndex(String field, Sort.Direction direction, boolean isUnique, boolean isSparse) {
        Integer dir = direction.equals(Sort.Direction.ASC) ? 1 : -1;
        DBObject index = new BasicDBObject(field, dir);
        DBObject options = new BasicDBObject();
        if (isSparse)
            options.put("sparse", true);
        if (isUnique)
            options.put("unique", true);
        DBCollection collection = mongoOperations.getCollection(mongoOperations.getCollectionName(model));
        collection.createIndex(index, options);
    }

    public void createIndex(String field, Sort.Direction direction, boolean isUnique) {
        this.createIndex(field, direction, isUnique, false);
    }

    public void createIndex(String field, Sort.Direction direction) {
        this.createIndex(field, direction, false, false);
    }

    public void createIndex(String field) {
        this.createIndex(field, Sort.Direction.ASC, false, false);
    }

    /**
     * Converts a generic {@link Iterable} to a {@link List}.
     * 
     * @param iterable
     * @param <S>
     * @return
     */
    private <S extends T> List<S> iterableToList(Iterable<S> iterable) {
        List<S> list = new ArrayList<>();
        for (S entity : iterable) {
            list.add(entity);
        }
        return list;
    }

    public MongoOperations getMongoOperations() {
        return mongoOperations;
    }

    public Class<T> getModel() {
        return model;
    }
}