org.rhwlab.dispim.datasource.Voxel.java Source code

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Here is the source code for org.rhwlab.dispim.datasource.Voxel.java

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package org.rhwlab.dispim.datasource;

import org.apache.commons.math3.linear.ArrayRealVector;
import org.apache.commons.math3.linear.RealVector;
import org.apache.commons.math3.ml.clustering.Clusterable;

/**
 *
 * @author gevirl
 */
public class Voxel implements Clusterable {
    public Voxel(long[] v, int i, double adj) {
        this(v, i);
        this.adjustedIntensity = adj;
    }

    public Voxel(long[] v, int i) {
        this(new ArrayRealVector(toDouble(v)), i, 0.0);
    }

    public Voxel(RealVector v, int i, double adj) {
        this.coords = v;
        this.intensity = i;
        this.adjustedIntensity = adj;
    }

    @Override
    public double[] getPoint() {
        return coords.toArray();
    }

    public int getIntensity() {
        return intensity;
    }

    // convert a long[] to double[]
    static double[] toDouble(long[] v) {
        double[] ret = new double[v.length];
        for (int i = 0; i < v.length; ++i) {
            ret[i] = v[i];
        }
        return ret;
    }

    public void setAdjusted(double v) {
        this.adjustedIntensity = v;

    }

    public double getAdjusted() {
        return this.adjustedIntensity;
        //        return 1.0;
    }

    public RealVector getAsVector() {
        return this.coords;
    }

    public RealVector coords;
    public int intensity;
    public double adjustedIntensity;
}