org.sc.probro.data.DBObject.java Source code

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/*
   Copyright 2010 Massachusetts General Hospital
    
   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at
    
   http://www.apache.org/licenses/LICENSE-2.0
    
   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   See the License for the specific language governing permissions and
   limitations under the License.
*/
package org.sc.probro.data;

import java.text.DateFormat;
import java.text.ParseException;
import java.text.SimpleDateFormat;
import java.util.*;
import java.io.IOException;
import java.io.Reader;
import java.lang.reflect.Constructor;
import java.lang.reflect.Field;
import java.lang.reflect.InvocationTargetException;
import java.lang.reflect.Modifier;
import java.sql.Clob;
import java.sql.Connection;
import java.sql.ResultSet;
import java.sql.ResultSetMetaData;
import java.sql.SQLException;
import java.sql.Statement;

import org.json.JSONException;
import org.json.JSONObject;
import org.json.JSONWriter;
import org.sc.probro.ReflectedObject;

public abstract class DBObject extends ReflectedObject {

    public Field[] getAllFields(String... omit) {
        Set<String> omitFields = omit.length == 0 ? null : new TreeSet<String>(Arrays.asList(omit));
        Map<String, Field> fs = getFieldMap();
        ArrayList<Field> flist = new ArrayList<Field>();
        for (String fname : fs.keySet()) {
            if (omitFields == null || !omitFields.contains(fname)) {
                flist.add(fs.get(fname));
            }
        }
        return flist.toArray(new Field[0]);
    }

    public Field[] getTemplateFields(String... omit) {
        Set<String> omitFields = omit.length == 0 ? null : new TreeSet<String>(Arrays.asList(omit));
        Map<String, Field> fs = getFieldMap();
        ArrayList<Field> flist = new ArrayList<Field>();
        for (String fname : fs.keySet()) {
            if (omitFields == null || !omitFields.contains(fname)) {
                try {
                    Object value = fs.get(fname).get(this);
                    if (value != null) {
                        flist.add(fs.get(fname));
                    }
                } catch (IllegalAccessException e) {
                    throw new IllegalStateException(e);
                }
            }
        }
        return flist.toArray(new Field[0]);
    }

    public String prepareSQLWhereClause(String... omit) {

        Field[] fs = getAllFields(omit);
        StringBuilder clause = new StringBuilder();

        for (int i = 0; i < fs.length; i++) {
            String fieldName = fs[i].getName();

            if (clause.length() > 0) {
                clause.append(" AND ");
            }
            clause.append(String.format("%s=?", fieldName));
        }
        return clause.toString();
    }

    public String prepareSQLTemplateWhereClause(String... omit) {

        Field[] fs = getTemplateFields(omit);
        StringBuilder clause = new StringBuilder();
        for (int i = 0; i < fs.length; i++) {
            String fieldName = fs[i].getName();
            if (clause.length() > 0) {
                clause.append(" AND ");
            }
            clause.append(String.format("%s=?", fieldName));
        }
        return clause.length() > 0 ? String.format(" WHERE %s", clause.toString()) : "";
    }

    public String prepareSQLInsertValuesClause(String... omit) {
        Field[] fs = getAllFields(getAutoGeneratedFields());
        StringBuilder clause = new StringBuilder();
        for (int i = 0; i < fs.length; i++) {
            String fieldName = fs[i].getName();
            if (clause.length() > 0) {
                clause.append(", ");
            }
            clause.append(String.format("?"));
        }
        return clause.toString();
    }

    public String prepareSQLInsertFieldsClause(String... omit) {
        Field[] fs = getAllFields(getAutoGeneratedFields());
        StringBuilder clause = new StringBuilder();
        for (int i = 0; i < fs.length; i++) {
            String fieldName = fs[i].getName();
            if (clause.length() > 0) {
                clause.append(", ");
            }
            clause.append(String.format("%s", fieldName));
        }
        return clause.toString();
    }

    public String prepareSQLUpdateFieldsClause(String... omit) {
        Field[] fs = getAllFields(getAutoGeneratedFields());
        StringBuilder clause = new StringBuilder();
        for (int i = 0; i < fs.length; i++) {
            String fieldName = fs[i].getName();
            if (clause.length() > 0) {
                clause.append(", ");
            }
            clause.append(String.format("%s=?", fieldName));
        }
        return clause.toString();
    }

    public String[] getAutoGeneratedFields() {
        return new String[0];
    }

    public String[] getKeyFields() {
        return new String[0];
    }

    public DBObject() {
    }

    public String getTableName() {
        String className = getClass().getSimpleName();
        if (className.endsWith("Object")) {
            className = className.substring(0, className.length() - 6);
        }
        return className.toUpperCase() + "S";
    }

    private static String readClob(Clob c) throws SQLException {
        StringBuilder sb = new StringBuilder();
        Reader r = c.getCharacterStream();
        int charInt = -1;
        try {
            while ((charInt = r.read()) != -1) {
                sb.append((char) charInt);
            }
        } catch (IOException e) {
            e.printStackTrace(System.err);
        }
        return sb.toString();
    }

    public DBObject(ResultSet rs) throws SQLException {
        setFromResultSet(rs);
    }

    public void setFromResultSet(ResultSet rs) throws SQLException {
        ResultSetMetaData data = rs.getMetaData();

        for (int i = 1; i <= data.getColumnCount(); i++) {
            String columnName = data.getColumnName(i).toLowerCase();
            try {
                Field f = getClass().getField(columnName);
                int mod = f.getModifiers();

                if (Modifier.isPublic(mod) && !Modifier.isStatic(mod)) {
                    Object value = rs.getObject(i);
                    if (value instanceof Clob) {
                        Clob clob = (Clob) value;
                        f.set(this, readClob(clob));
                    } else if (value instanceof java.sql.Date) {
                        java.sql.Date sqlDate = (java.sql.Date) value;
                        long time = sqlDate.getTime();
                        java.util.Date date = new java.util.Date(time);
                        f.set(this, date);
                    } else {
                        f.set(this, value);
                    }
                }

            } catch (NoSuchFieldException e) {
                // do nothing.

            } catch (IllegalAccessException e) {
                e.printStackTrace(System.err);
            }
        }
    }

    public DBObject(JSONObject obj) throws SQLException {
        Iterator<String> keys = obj.keys();
        while (keys.hasNext()) {
            String key = keys.next();
            try {
                Field f = getClass().getField(key);
                int mod = f.getModifiers();
                Class type = f.getType();

                if (Modifier.isPublic(mod) && !Modifier.isStatic(mod)) {
                    if (isSubclass(type, String.class)) {
                        f.set(this, obj.getString(key));
                    } else if (isSubclass(type, Integer.class)) {
                        f.set(this, obj.getInt(key));
                    } else if (isSubclass(type, Double.class)) {
                        f.set(this, obj.getDouble(key));
                    } else {
                        f.set(this, obj.get(key));
                    }
                }

            } catch (NoSuchFieldException e) {
                e.printStackTrace(System.err);

            } catch (IllegalAccessException e) {
                e.printStackTrace(System.err);

            } catch (JSONException e) {
                e.printStackTrace(System.err);
            }
        }
    }

    public void setFromJSON(JSONObject obj) {
        throw new RuntimeException("Unsuppported");
    }

    public abstract boolean isAutoGenerated(String fieldName);

    public String getKey() {
        return null;
    }

    public String writeHTMLRowHeader() {
        StringBuilder html = new StringBuilder();

        html.append(String.format("<tr class=\"header_%s\">", getClass().getSimpleName().toLowerCase()));
        for (Field f : getClass().getFields()) {
            int mod = f.getModifiers();
            if (Modifier.isPublic(mod) && !Modifier.isStatic(mod)) {
                String name = f.getName();
                html.append(String.format("<th>%s</th>", name));
            }
        }
        html.append(String.format("</tr>"));

        return html.toString();
    }

    public String writeHTMLObject(boolean asRow) {
        StringBuilder html = new StringBuilder();
        if (asRow) {
            html.append(String.format("<tr class=\"obj_%s\">", getClass().getSimpleName().toLowerCase()));
        } else {
            html.append(String.format("<table class=\"obj_%s\">", getClass().getSimpleName().toLowerCase()));
        }
        for (Field f : getClass().getFields()) {
            int mod = f.getModifiers();
            if (Modifier.isPublic(mod) && !Modifier.isStatic(mod)) {
                String name = f.getName();
                try {
                    String value = String.valueOf(f.get(this));

                    if (!asRow) {
                        html.append(String.format("<tr class=\"field_%s\">", name.toLowerCase()));
                        html.append(String.format("<td>%s</td>", name));
                    }
                    html.append(String.format("<td class=\"value_%s\">%s</td>", name.toLowerCase(), value));
                    if (!asRow) {
                        html.append("</tr>");
                    }

                } catch (IllegalAccessException e) {
                    e.printStackTrace(System.err);
                }
            }
        }
        if (asRow) {
            html.append(String.format("</tr>"));
        } else {
            html.append("</table>");
        }
        return html.toString();
    }

    protected void writeJSONObjectContents(JSONWriter json) throws JSONException {
        for (Field f : getClass().getFields()) {
            int mod = f.getModifiers();
            if (Modifier.isPublic(mod) && !Modifier.isStatic(mod)) {
                String name = f.getName();
                try {
                    Object value = f.get(this);
                    if (value != null) {
                        json.key(name).value(value);
                    }

                } catch (IllegalAccessException e) {
                    throw new JSONException(e);
                }
            }
        }
    }

    /**
     * Basically, isSubsetOf(x) is *almost* equivalent to !findMatchingFields(x).isEmpty(), 
     * except that it's directional -- it takes 'nulls' as missing values, and so it won't signal 
     * false for a null field in this object that has a value in the other.  
     * 
     * @param <T>
     * @param other
     * @return
     */
    public <T extends DBObject> boolean isSubsetOf(T other) {
        if (!isSubclass(other.getClass(), getClass())) {
            throw new IllegalArgumentException(String.format("%s is not a subclass of %s",
                    other.getClass().getSimpleName(), getClass().getSimpleName()));
        }

        for (Field f : getClass().getFields()) {
            int mod = f.getModifiers();
            if (Modifier.isPublic(mod) && !Modifier.isStatic(mod)) {
                try {
                    Object thisValue = f.get(this), thatValue = f.get(other);
                    if (thisValue != null) {
                        if (thatValue == null || !thisValue.equals(thatValue)) {
                            return false;
                        }
                    }
                } catch (IllegalAccessException e) {
                    e.printStackTrace(System.err);
                }
            }
        }

        return true;
    }

    public void setFromDBObject(DBObject obj) {
        Map<String, Field> otherFields = obj.getFieldMap();
        Map<String, Field> myFields = getFieldMap();

        for (String fieldName : otherFields.keySet()) {
            if (myFields.containsKey(fieldName)
                    && isSubclass(otherFields.get(fieldName).getType(), myFields.get(fieldName).getType())) {
                try {
                    Object otherValue = otherFields.get(fieldName).get(obj);
                    if (otherValue != null) {
                        myFields.get(fieldName).set(this, otherValue);
                    }
                } catch (IllegalAccessException e) {
                    throw new IllegalStateException(e);
                }
            }
        }
    }

    /**
     * Returns the set of field names for which the values whose values differ between this object
     * and the object given as an argument.  The argument object must be a subclass of the class of 
     * 'this'.  Two values are said to 'differ' if one is 'null' when the other isn't, or if both
     * values are non-null but equals() (when called on one value, given the other value as an argument) 
     * returns false.
     * 
     * @param <T>
     * @param other  The other object to compare to. 
     * @throws IllegalArgumentException if the argument object is not a subclass of the class of 'this'.
     * @return
     */
    public <T extends DBObject> Set<String> findMismatchingFields(T other) {
        if (!isSubclass(other.getClass(), getClass())) {
            throw new IllegalArgumentException(String.format("%s is not a subclass of %s",
                    other.getClass().getSimpleName(), getClass().getSimpleName()));
        }

        Set<String> mismatches = new TreeSet<String>();

        for (Field f : getClass().getFields()) {
            int mod = f.getModifiers();
            if (Modifier.isPublic(mod) && !Modifier.isStatic(mod)) {
                try {
                    Object thisValue = f.get(this), thatValue = f.get(other);
                    if (thisValue != null || thatValue != null) {
                        if (thisValue == null || thatValue == null || !thisValue.equals(thatValue)) {
                            mismatches.add(f.getName());
                        }
                    }
                } catch (IllegalAccessException e) {
                    e.printStackTrace(System.err);
                }
            }
        }

        return mismatches;
    }

    public void writeJSONObject(JSONWriter json) throws JSONException {
        json.object();
        writeJSONObjectContents(json);
        json.endObject();
    }
}