org.sf.xrime.algorithms.partitions.connected.strongly.ExtractPartitions.java Source code

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Here is the source code for org.sf.xrime.algorithms.partitions.connected.strongly.ExtractPartitions.java

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/*
 * Copyright (C) IBM Corp. 2009.
 * 
 * Licensed under the Apache License, Version 2.0 (the "License"); you may not
 * use this file except in compliance with the License. You may obtain a copy of
 * the License at
 * 
 * http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
 * WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
 * License for the specific language governing permissions and limitations under
 * the License.
 */
package org.sf.xrime.algorithms.partitions.connected.strongly;

import java.io.IOException;
import java.util.Iterator;

import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.io.compress.GzipCodec;
import org.apache.hadoop.mapred.FileInputFormat;
import org.apache.hadoop.mapred.FileOutputFormat;
import org.apache.hadoop.mapred.JobClient;
import org.apache.hadoop.mapred.JobConf;
import org.apache.hadoop.mapred.Mapper;
import org.apache.hadoop.mapred.OutputCollector;
import org.apache.hadoop.mapred.Reducer;
import org.apache.hadoop.mapred.Reporter;
import org.apache.hadoop.mapred.SequenceFileInputFormat;
import org.sf.xrime.ProcessorExecutionException;
import org.sf.xrime.algorithms.GraphAlgorithm;
import org.sf.xrime.algorithms.utils.GraphAlgorithmMapReduceBase;
import org.sf.xrime.model.vertex.LabeledAdjBiSetVertex;

/**
 * This class is used to extract partitions corresponding to SCCs.
 * @author xue
 */
public class ExtractPartitions extends GraphAlgorithm {
    /**
     * Default constructor.
     */
    public ExtractPartitions() {
        super();
    }

    /**
     * Mapper.
     * @author xue
     */
    public static class MapClass extends GraphAlgorithmMapReduceBase
            implements Mapper<Text, LabeledAdjBiSetVertex, Text, Text> {

        @Override
        public void map(Text key, LabeledAdjBiSetVertex value, OutputCollector<Text, Text> output,
                Reporter reporter) throws IOException {
            if (value.getStringLabel(ConstantLabels.FINAL_LABEL) != null) {
                // The normal case.
                output.collect(key, new Text(value.getStringLabel(ConstantLabels.FINAL_LABEL)));
            } else {
                // A special case, where the scc is a single vertex.
                output.collect(key, key);
            }
        }
    }

    /**
     * Reducer. Used to merge the map output into less files.
     * @author xue
     */
    public static class ReduceClass extends GraphAlgorithmMapReduceBase implements Reducer<Text, Text, Text, Text> {

        @Override
        public void reduce(Text key, Iterator<Text> values, OutputCollector<Text, Text> output, Reporter reporter)
                throws IOException {
            while (values.hasNext()) {
                output.collect(key, values.next());
            }
        }
    }

    @Override
    public void execute() throws ProcessorExecutionException {
        JobConf conf = new JobConf(context, ExtractPartitions.class);
        conf.setJobName("ExtractPartitions");

        // the keys are vertex identifiers (strings)
        conf.setOutputKeyClass(Text.class);
        // the values are vertexes (Writable)
        conf.setOutputValueClass(Text.class);
        conf.setMapperClass(MapClass.class);
        // No combiners.
        conf.setReducerClass(ReduceClass.class);
        // makes the file format suitable for machine processing.
        conf.setInputFormat(SequenceFileInputFormat.class);
        try {
            Path[] paths = new Path[1];
            FileInputFormat.setInputPaths(conf, getSource().getPaths().toArray(paths));
            FileOutputFormat.setOutputPath(conf, getDestination().getPath());
        } catch (IllegalAccessException e1) {
            throw new ProcessorExecutionException(e1);
        }
        conf.setNumMapTasks(getMapperNum());
        conf.setNumReduceTasks(getReducerNum());
        conf.setMapOutputCompressorClass(GzipCodec.class);
        conf.setCompressMapOutput(true);

        try {
            this.runningJob = JobClient.runJob(conf);
        } catch (IOException e) {
            throw new ProcessorExecutionException(e);
        }
    }
}