org.sf.xrime.algorithms.transform.vertex.AdjSetWithLabel2AdjSetVertexTransformer.java Source code

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Here is the source code for org.sf.xrime.algorithms.transform.vertex.AdjSetWithLabel2AdjSetVertexTransformer.java

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/*
 * Copyright (C) IBM Corp. 2009.
 * 
 * Licensed under the Apache License, Version 2.0 (the "License"); you may not
 * use this file except in compliance with the License. You may obtain a copy of
 * the License at
 * 
 * http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
 * WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
 * License for the specific language governing permissions and limitations under
 * the License.
 */
package org.sf.xrime.algorithms.transform.vertex;

import java.io.IOException;
import java.util.ArrayList;
import java.util.List;

import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.io.compress.GzipCodec;
import org.apache.hadoop.mapred.FileInputFormat;
import org.apache.hadoop.mapred.FileOutputFormat;
import org.apache.hadoop.mapred.JobClient;
import org.apache.hadoop.mapred.JobConf;
import org.apache.hadoop.mapred.MapReduceBase;
import org.apache.hadoop.mapred.Mapper;
import org.apache.hadoop.mapred.OutputCollector;
import org.apache.hadoop.mapred.Reporter;
import org.apache.hadoop.mapred.SequenceFileInputFormat;
import org.apache.hadoop.mapred.SequenceFileOutputFormat;
import org.apache.hadoop.util.GenericOptionsParser;
import org.apache.hadoop.util.ToolRunner;
import org.sf.xrime.ProcessorExecutionException;
import org.sf.xrime.Transformer;
import org.sf.xrime.model.edge.AdjVertexEdge;
import org.sf.xrime.model.edge.AdjVertexEdgeWithLabel;
import org.sf.xrime.model.vertex.AdjSetVertex;
import org.sf.xrime.model.vertex.AdjSetVertexWithTwoHopLabel;
import org.sf.xrime.preprocessing.smth.Raw2OutAdjVertexTransformer;

/**
 * Transform AdjSetVertexWithTwoHopLabel into AdjSetVertex.
 * 
 * @author juwei
 */
public class AdjSetWithLabel2AdjSetVertexTransformer extends Transformer {
    /**
     * Default constructor.
     */
    public AdjSetWithLabel2AdjSetVertexTransformer() {
        super();
    }

    /**
     * Another constructor.
     * 
     * @param src
     * @param dest
     */
    public AdjSetWithLabel2AdjSetVertexTransformer(Path src, Path dest) {
        super(src, dest);
    }

    /**
     * Transform AdjSetVertexWithTwoHopLabel into AdjSetVertex
     * 
     * @author xue
     */
    public static class MapClass extends MapReduceBase
            implements Mapper<Text, AdjSetVertexWithTwoHopLabel, Text, AdjSetVertex> {
        @Override
        public void map(Text key, AdjSetVertexWithTwoHopLabel value, OutputCollector<Text, AdjSetVertex> output,
                Reporter reporter) throws IOException {
            AdjSetVertex outputValue = new AdjSetVertex();
            outputValue.setId(value.getId());
            for (AdjVertexEdgeWithLabel neighbor : value.getNeighbors()) {
                outputValue.addOpposite(new AdjVertexEdge(neighbor.getOpposite()));
            }
            output.collect(key, outputValue);
        }
    }

    /*   *//**
           * Continue to transform the outgoing adjacent vertexes list to
           * undirected ones, and set appropriate label each vertex.
           * 
           * @author xue
           * @author juwei
           */
    /*
     * public static class ReduceClass extends MapReduceBase implements Reducer<Text,
     * AdjSetVertex, Text, AdjSetVertex> {
     * 
     * @Override public void reduce(Text key, Iterator<AdjSetVertex> values,
     * OutputCollector<Text, AdjSetVertex> output, Reporter reporter) throws
     * IOException { // TODO } }
     */

    @Override
    public void execute() throws ProcessorExecutionException {
        JobConf jobConf = new JobConf(conf, AdjSetWithLabel2AdjSetVertexTransformer.class);
        jobConf.setJobName("AdjSetWithLabel2AdjSetVertexTransformer");

        // the keys are vertex identifiers (strings)
        jobConf.setOutputKeyClass(Text.class);
        // the values are adjacent vertexes with labels (Writable)
        jobConf.setOutputValueClass(AdjSetVertex.class);

        jobConf.setMapperClass(MapClass.class);
        // no combiner is needed.
        // no reduce is needed.
        // jobConf.setReducerClass(ReduceClass.class);

        // makes the file format suitable for machine processing.
        jobConf.setInputFormat(SequenceFileInputFormat.class);
        jobConf.setOutputFormat(SequenceFileOutputFormat.class);

        // Enable compression.
        jobConf.setCompressMapOutput(true);
        jobConf.setMapOutputCompressorClass(GzipCodec.class);

        FileInputFormat.setInputPaths(jobConf, srcPath);
        FileOutputFormat.setOutputPath(jobConf, destPath);

        jobConf.setNumMapTasks(mapperNum);
        jobConf.setNumReduceTasks(reducerNum);

        try {
            this.runningJob = JobClient.runJob(jobConf);
        } catch (IOException e) {
            throw new ProcessorExecutionException(e);
        }
    }

    /**
     * @param args
     */
    public static void main(String[] args) {
        try {
            int res = ToolRunner.run(new AdjSetWithLabel2AdjSetVertexTransformer(), args);
            System.exit(res);
        } catch (Exception e) {
            e.printStackTrace();
        }
    }
}