org.sf.xrime.algorithms.transform.vertex.InAdjVertex2AdjBiSetVertexTransformer.java Source code

Java tutorial

Introduction

Here is the source code for org.sf.xrime.algorithms.transform.vertex.InAdjVertex2AdjBiSetVertexTransformer.java

Source

/*
 * Copyright (C) IBM Corp. 2009.
 * 
 * Licensed under the Apache License, Version 2.0 (the "License"); you may not
 * use this file except in compliance with the License. You may obtain a copy of
 * the License at
 * 
 * http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
 * WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
 * License for the specific language governing permissions and limitations under
 * the License.
 */
package org.sf.xrime.algorithms.transform.vertex;

import java.io.IOException;
import java.util.Iterator;

import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.io.compress.GzipCodec;
import org.apache.hadoop.mapred.FileInputFormat;
import org.apache.hadoop.mapred.FileOutputFormat;
import org.apache.hadoop.mapred.JobClient;
import org.apache.hadoop.mapred.JobConf;
import org.apache.hadoop.mapred.MapReduceBase;
import org.apache.hadoop.mapred.Mapper;
import org.apache.hadoop.mapred.OutputCollector;
import org.apache.hadoop.mapred.Reducer;
import org.apache.hadoop.mapred.Reporter;
import org.apache.hadoop.mapred.SequenceFileInputFormat;
import org.apache.hadoop.mapred.SequenceFileOutputFormat;
import org.apache.hadoop.util.ToolRunner;
import org.sf.xrime.ProcessorExecutionException;
import org.sf.xrime.Transformer;
import org.sf.xrime.model.edge.AdjVertexEdge;
import org.sf.xrime.model.edge.Edge;
import org.sf.xrime.model.vertex.AdjBiSetVertex;
import org.sf.xrime.model.vertex.AdjVertex;

/**
 * Transform inbound adjacent vertexes lists into the data structure suitable
 * for some algorithms. The output AdjBiSetVertex collects the opposites of
 * incoming and outgoing incident edges into 2 sets.
 * 
 * @author xue
 */
public class InAdjVertex2AdjBiSetVertexTransformer extends Transformer {
    /**
     * Default constructor.
     */
    public InAdjVertex2AdjBiSetVertexTransformer() {
        super();
    }

    /**
     * Another constructor.
     * 
     * @param src
     * @param dest
     */
    public InAdjVertex2AdjBiSetVertexTransformer(Path src, Path dest) {
        super(src, dest);
    }

    /**
     * Map inbound adjacent vertexes lists into AdjBiSetVertex.
     * 
     * @author xue
     */
    public static class MapClass extends MapReduceBase implements Mapper<Text, AdjVertex, Text, AdjBiSetVertex> {

        @Override
        public void map(Text key, AdjVertex value, OutputCollector<Text, AdjBiSetVertex> output, Reporter reporter)
                throws IOException {
            // The vertex of this inbound adjacent vertexes list.
            AdjBiSetVertex the_vertex = new AdjBiSetVertex();
            String the_id = value.getId();
            // Set the id of the vertex.
            the_vertex.setId(the_id);
            // For each inbound edge of the vertex.
            for (Edge edge : value.getEdges()) {
                String from_vertex = edge.getFrom();
                // Add the other end of the inbound edge to backward vertex set
                // of the vertex.
                the_vertex.addBackwardVertex(new AdjVertexEdge(from_vertex));
                // Create new object for the other end of the inbound edge.
                AdjBiSetVertex new_vertex = new AdjBiSetVertex();
                new_vertex.setId(from_vertex);
                new_vertex.addForwardVertex(new AdjVertexEdge(the_id));
                // Collect this one.
                output.collect(new Text(from_vertex), new_vertex);
            }
            // Collect the vertex.
            output.collect(new Text(the_id), the_vertex);
        }
    }

    /**
     * Merge AdjBiSetVertex.
     * 
     * @author xue
     */
    public static class ReduceClass extends MapReduceBase
            implements Reducer<Text, AdjBiSetVertex, Text, AdjBiSetVertex> {

        @Override
        public void reduce(Text key, Iterator<AdjBiSetVertex> values, OutputCollector<Text, AdjBiSetVertex> output,
                Reporter reporter) throws IOException {
            // Create a new object to accommodate.
            AdjBiSetVertex result_vertex = new AdjBiSetVertex();
            result_vertex.setId(key.toString());
            // Merge forward and backward adjacent vertex sets respectively.
            while (values.hasNext()) {
                AdjBiSetVertex curr_vertex = values.next();
                for (AdjVertexEdge forward_vertex : curr_vertex.getForwardVertexes()) {
                    result_vertex.addForwardVertex(forward_vertex);
                }
                for (AdjVertexEdge backward_vertex : curr_vertex.getBackwardVertexes()) {
                    result_vertex.addBackwardVertex(backward_vertex);
                }
            }
            output.collect(key, result_vertex);
        }
    }

    @Override
    public void execute() throws ProcessorExecutionException {
        JobConf jobConf = new JobConf(conf, InAdjVertex2AdjBiSetVertexTransformer.class);
        jobConf.setJobName("InAdjVertex2AdjBiSetVertexTransformer");

        // the keys are author names (strings)
        jobConf.setOutputKeyClass(Text.class);
        // the values are adjacent vertexes (Writable)
        jobConf.setOutputValueClass(AdjBiSetVertex.class);
        jobConf.setMapperClass(MapClass.class);
        // No combiner is permitted.
        jobConf.setReducerClass(ReduceClass.class);
        // makes the file format suitable for machine processing.
        jobConf.setInputFormat(SequenceFileInputFormat.class);
        jobConf.setOutputFormat(SequenceFileOutputFormat.class);
        FileInputFormat.setInputPaths(jobConf, srcPath);
        FileOutputFormat.setOutputPath(jobConf, destPath);
        jobConf.setNumMapTasks(mapperNum);
        jobConf.setNumReduceTasks(reducerNum);
        jobConf.setMapOutputCompressorClass(GzipCodec.class);
        jobConf.setCompressMapOutput(true);

        try {
            this.runningJob = JobClient.runJob(jobConf);
        } catch (IOException e) {
            throw new ProcessorExecutionException(e);
        }
    }

    /**
     * @param args
     */
    public static void main(String[] args) {
        try {
            int result = ToolRunner.run(new InAdjVertex2AdjBiSetVertexTransformer(), args);
            System.exit(result);
        } catch (Exception e) {
            e.printStackTrace();
        }
    }
}