List of usage examples for javax.xml.parsers DocumentBuilder setEntityResolver
public abstract void setEntityResolver(EntityResolver er);
From source file:net.jawr.web.bundle.processor.BundleProcessor.java
/** * Returns the XML document of the web.xml file * /*from ww w. j av a 2s . co m*/ * @param webXmlPath * the web.xml path * @return the Xml document of the web.xml file * * @throws ParserConfigurationException * if a parser configuration exception occurs * @throws FactoryConfigurationError * if a factory configuration exception occurs * @throws SAXException * if a SAX exception occurs * @throws IOException * if an IO exception occurs */ protected Document getWebXmlDocument(String baseDir) throws ParserConfigurationException, FactoryConfigurationError, SAXException, IOException { File webXml = new File(baseDir, WEB_XML_FILE_PATH); DocumentBuilder docBuilder = DocumentBuilderFactory.newInstance().newDocumentBuilder(); docBuilder.setEntityResolver(new EntityResolver() { public InputSource resolveEntity(String publicId, String systemId) throws SAXException, IOException { return null; } }); Document doc = docBuilder.parse(webXml); return doc; }
From source file:ffx.ui.KeywordPanel.java
/** * Load up the Force Field X Keyword Definitions *//*www .j av a2s .c o m*/ private void loadXML() { NodeList groups, keywords, values; Element group, keyword, value; String groupName; String keywordName, keywordDescription, keywordGUI; groups = null; try { // Build the Document from the keywords.xml file DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance(); DocumentBuilder db = dbf.newDocumentBuilder(); db.setEntityResolver(new DTDResolver()); URL keyURL = getClass().getClassLoader().getResource("ffx/ui/commands/keywords.xml"); Document doc = db.parse(keyURL.openStream()); Element document = doc.getDocumentElement(); Element body = (Element) document.getElementsByTagName("body").item(0); groups = body.getElementsByTagName("section"); } catch (ParserConfigurationException | SAXException | IOException e) { logger.warning(e.toString()); } keywordHashMap = new LinkedHashMap<>(); groupHashMap = new LinkedHashMap<>(); groupHashMap.put("ACTIVE KEYWORDS", "Active Keywords"); groupHashMap.put("FLAT FILE VIEW", "Flat File View"); groupComboBox = new JComboBox<>(); groupComboBox.addItem("Active Keywords"); groupComboBox.addItem("Flat File View"); descriptTextArea = new JTextArea(); descriptTextArea.setLineWrap(true); descriptTextArea.setWrapStyleWord(true); Insets insets = descriptTextArea.getInsets(); insets.set(5, 5, 5, 5); descriptTextArea.setMargin(insets); int length = groups.getLength(); // Iterate through the Keyword Groups for (int i = 0; i < length; i++) { group = (Element) groups.item(i); groupName = group.getAttribute("name"); groupComboBox.addItem(groupName); keywords = group.getElementsByTagName("subsection"); int klength = keywords.getLength(); for (int j = 0; j < klength; j++) { keyword = (Element) keywords.item(j); keywordName = keyword.getAttribute("name"); Node text = keyword.getFirstChild(); keywordDescription = text.getNodeValue().replace('\n', ' '); keywordDescription = keywordDescription.replaceAll(" +", " "); keywordGUI = keyword.getAttribute("rep"); KeywordComponent.SwingRepresentation type; try { type = KeywordComponent.SwingRepresentation.valueOf(keywordGUI.toUpperCase()); } catch (Exception e) { type = null; logger.log(Level.WARNING, "{0}: Unknown GUI Component - {1}", new Object[] { keywordName, type }); System.exit(-1); } KeywordComponent key; if (type == KeywordComponent.SwingRepresentation.CHECKBOXES || type == KeywordComponent.SwingRepresentation.COMBOBOX) { values = keyword.getElementsByTagName("Value"); String labels[] = new String[values.getLength()]; for (int k = 0; k < values.getLength(); k++) { value = (Element) values.item(k); labels[k] = value.getAttribute("name"); } key = new KeywordComponent(keywordName, groupName, type, keywordDescription, descriptTextArea, labels); } else { key = new KeywordComponent(keywordName, groupName, type, keywordDescription, descriptTextArea); } keywordHashMap.put(keywordName.toUpperCase(), key); groupHashMap.put(groupName.toUpperCase(), groupName); } } groupComboBox.setSelectedIndex(0); }
From source file:com.naryx.tagfusion.cfm.document.cfDOCUMENT.java
public Document getDocument(String _renderedBody) throws cfmRunTimeException { try {//w ww . ja v a 2s .c o m DocumentBuilder builder; InputSource is = new InputSource(new StringReader(_renderedBody)); Document doc; DocumentBuilderFactory builderFactory = DocumentBuilderFactory.newInstance(); builderFactory.setValidating(false); builder = builderFactory.newDocumentBuilder(); builder.setEntityResolver(new NoValidationResolver()); doc = builder.parse(is); return doc; } catch (Exception e) { throw newRunTimeException("Failed to create valid xhtml document due to " + e.getClass().getName() + ": " + e.getMessage()); } }
From source file:ffx.ui.ModelingPanel.java
private void initialize() { // Command Description descriptTextArea = new JTextArea(); descriptTextArea.setEditable(false); descriptTextArea.setLineWrap(true);/*ww w .j av a2 s . c o m*/ descriptTextArea.setWrapStyleWord(true); descriptTextArea.setDoubleBuffered(true); Insets insets = descriptTextArea.getInsets(); insets.set(5, 5, 5, 5); descriptTextArea.setMargin(insets); descriptScrollPane = new JScrollPane(descriptTextArea, JScrollPane.VERTICAL_SCROLLBAR_ALWAYS, JScrollPane.HORIZONTAL_SCROLLBAR_NEVER); descriptScrollPane.setBorder(etchedBorder); // Command Input commandTextArea = new JTextArea(); commandTextArea.setEditable(false); commandTextArea.setLineWrap(true); commandTextArea.setWrapStyleWord(true); commandTextArea.setDoubleBuffered(true); commandTextArea.setMargin(insets); // Command Options optionsTabbedPane = new JTabbedPane(); statusLabel = new JLabel(); statusLabel.setBorder(etchedBorder); statusLabel.setToolTipText(" Modeling command that will be executed"); commandPanel = new JPanel(flowLayout); commandPanel.add(optionsTabbedPane); splitPane = new JSplitPane(JSplitPane.VERTICAL_SPLIT, commandPanel, descriptScrollPane); splitPane.setContinuousLayout(true); splitPane.setResizeWeight(1.0d); splitPane.setOneTouchExpandable(true); setLayout(new BorderLayout()); add(splitPane, BorderLayout.CENTER); add(statusLabel, BorderLayout.SOUTH); // Initialize the Amino/Nucleic Acid ComboBox. acidComboBox.setEditable(false); acidComboBox.setMaximumSize(sizer.getPreferredSize()); acidComboBox.setPreferredSize(sizer.getPreferredSize()); acidComboBox.setMinimumSize(sizer.getPreferredSize()); acidComboBox.setFont(Font.decode("Monospaced")); acidTextField.setMaximumSize(sizer.getPreferredSize()); acidTextField.setMinimumSize(sizer.getPreferredSize()); acidTextField.setPreferredSize(sizer.getPreferredSize()); acidTextArea.setEditable(false); acidTextArea.setWrapStyleWord(true); acidTextArea.setLineWrap(true); acidTextArea.setFont(Font.decode("Monospaced")); acidScrollPane = new JScrollPane(acidTextArea); Dimension d = new Dimension(300, 400); acidScrollPane.setPreferredSize(d); acidScrollPane.setMaximumSize(d); acidScrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS); // Load the FFX commands.xml file that defines FFX commands. try { DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance(); DocumentBuilder db = dbf.newDocumentBuilder(); db.setEntityResolver(new DTDResolver()); URL comURL = getClass().getClassLoader().getResource("ffx/ui/commands/commands.xml"); Document doc = db.parse(comURL.openStream()); NodeList nodelist = doc.getChildNodes(); Node commandroot = null; for (int i = 0; i < nodelist.getLength(); i++) { commandroot = nodelist.item(i); if (commandroot.getNodeName().equals("FFXCommands") && commandroot instanceof Element) { break; } } if (commandroot == null || !(commandroot instanceof Element)) { commandList = null; } commandList = ((Element) commandroot).getElementsByTagName("Command"); } catch (ParserConfigurationException | SAXException | IOException e) { System.err.println(e); } finally { if (commandList == null) { System.out.println("Force Field X commands.xml could not be parsed."); logger.severe("Force Field X will exit."); System.exit(-1); } } // Create a ComboBox with commands specific to each type of coordinate // file. xyzCommands = new JComboBox<>(); intCommands = new JComboBox<>(); arcCommands = new JComboBox<>(); pdbCommands = new JComboBox<>(); anyCommands = new JComboBox<>(); Element command; String name; int numcommands = commandList.getLength(); for (int i = 0; i < numcommands; i++) { command = (Element) commandList.item(i); name = command.getAttribute("name"); String temp = command.getAttribute("fileType"); if (temp.contains("ANY")) { temp = "XYZ INT ARC PDB"; anyCommands.addItem(name); } String[] types = temp.split(" +"); for (String type : types) { if (type.contains("XYZ")) { xyzCommands.addItem(name); } if (type.contains("INT")) { intCommands.addItem(name); } if (type.contains("ARC")) { arcCommands.addItem(name); } if (type.contains("PDB")) { pdbCommands.addItem(name); } } } initCommandComboBox(xyzCommands); initCommandComboBox(intCommands); initCommandComboBox(arcCommands); initCommandComboBox(pdbCommands); initCommandComboBox(anyCommands); currentCommandBox = anyCommands; activeCommand = (String) anyCommands.getSelectedItem(); // Load the default Command. loadCommand(); // Load the default Log File Settings. logSettings.setActionCommand("LogSettings"); loadLogSettings(); // Create the Toolbar. toolBar = new JToolBar("Modeling Commands", JToolBar.HORIZONTAL); toolBar.setLayout(new FlowLayout(FlowLayout.LEFT)); jbLaunch = new JButton(new ImageIcon(getClass().getClassLoader().getResource("ffx/ui/icons/cog_go.png"))); jbLaunch.setActionCommand("Launch"); jbLaunch.setToolTipText("Launch the Force Field X Command"); jbLaunch.addActionListener(this); insets.set(2, 2, 2, 2); jbLaunch.setMargin(insets); toolBar.add(jbLaunch); jbStop = new JButton(new ImageIcon(getClass().getClassLoader().getResource("ffx/ui/icons/stop.png"))); jbStop.setActionCommand("End"); jbStop.setToolTipText("Terminate the Current Force Field X Command"); jbStop.addActionListener(this); jbStop.setMargin(insets); jbStop.setEnabled(false); toolBar.add(jbStop); toolBar.addSeparator(); toolBar.add(anyCommands); currentCommandBox = anyCommands; toolBar.addSeparator(); /* toolBar.add(logSettings); JButton jbdelete = new JButton(new ImageIcon(getClass().getClassLoader().getResource("ffx/ui/icons/page_delete.png"))); jbdelete.setActionCommand("Delete"); jbdelete.setToolTipText("Delete Log Files"); jbdelete.addActionListener(this); jbdelete.setMargin(insets); toolBar.add(jbdelete); toolBar.addSeparator(); */ ImageIcon icinfo = new ImageIcon(getClass().getClassLoader().getResource("ffx/ui/icons/information.png")); descriptCheckBox = new JCheckBoxMenuItem(icinfo); descriptCheckBox.addActionListener(this); descriptCheckBox.setActionCommand("Description"); descriptCheckBox.setToolTipText("Show/Hide Modeling Command Descriptions"); descriptCheckBox.setMargin(insets); toolBar.add(descriptCheckBox); toolBar.add(new JLabel("")); toolBar.setBorderPainted(false); toolBar.setFloatable(false); toolBar.setRollover(true); add(toolBar, BorderLayout.NORTH); // Load ModelingPanel preferences. Preferences prefs = Preferences.userNodeForPackage(ffx.ui.ModelingPanel.class); descriptCheckBox.setSelected(!prefs.getBoolean("JobPanel_description", true)); descriptCheckBox.doClick(); }
From source file:net.sourceforge.pmd.lang.xml.ast.XmlParser.java
protected Document parseDocument(Reader reader) throws ParseException { nodeCache.clear();// w ww. j a v a2s . co m try { String xmlData = IOUtils.toString(reader); DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance(); dbf.setNamespaceAware(parserOptions.isNamespaceAware()); dbf.setValidating(parserOptions.isValidating()); dbf.setIgnoringComments(parserOptions.isIgnoringComments()); dbf.setIgnoringElementContentWhitespace(parserOptions.isIgnoringElementContentWhitespace()); dbf.setExpandEntityReferences(parserOptions.isExpandEntityReferences()); dbf.setCoalescing(parserOptions.isCoalescing()); dbf.setXIncludeAware(parserOptions.isXincludeAware()); dbf.setFeature("http://xml.org/sax/features/external-general-entities", false); dbf.setFeature("http://xml.org/sax/features/external-parameter-entities", false); DocumentBuilder documentBuilder = dbf.newDocumentBuilder(); documentBuilder.setEntityResolver(parserOptions.getEntityResolver()); Document document = documentBuilder.parse(new InputSource(new StringReader(xmlData))); DOMLineNumbers lineNumbers = new DOMLineNumbers(document, xmlData); lineNumbers.determine(); return document; } catch (ParserConfigurationException | SAXException | IOException e) { throw new ParseException(e); } }
From source file:net.ymate.framework.commons.XPathHelper.java
private void __doInit(InputSource inputSource, EntityResolver entityResolver, ErrorHandler errorHandler) throws Exception { DocumentBuilder _builder = documentFactory.newDocumentBuilder(); if (entityResolver != null) { _builder.setEntityResolver(entityResolver); }/*ww w .j a v a2s .co m*/ if (errorHandler != null) { _builder.setErrorHandler(errorHandler); } __path = xpathFactory.newXPath(); __document = _builder.parse(inputSource); }
From source file:nl.nn.adapterframework.util.XmlUtils.java
static public Document buildDomDocument(Reader in, boolean namespaceAware, boolean xslt2, boolean resolveExternalEntities) throws DomBuilderException { Document document;// w w w. jav a 2 s.c o m InputSource src; DocumentBuilderFactory factory = getDocumentBuilderFactory(xslt2, namespaceAware); try { DocumentBuilder builder = factory.newDocumentBuilder(); if (!resolveExternalEntities) { builder.setEntityResolver(new XmlExternalEntityResolver()); } src = new InputSource(in); document = builder.parse(src); } catch (SAXParseException e) { throw new DomBuilderException(e); } catch (ParserConfigurationException e) { throw new DomBuilderException(e); } catch (IOException e) { throw new DomBuilderException(e); } catch (SAXException e) { throw new DomBuilderException(e); } if (document == null) { throw new DomBuilderException("Parsed Document is null"); } return document; }
From source file:nl.nn.adapterframework.util.XmlUtils.java
/** * Performs an Identity-transform, with resolving entities with the content files in the classpath * @param input/*from w w w. j a va2s.c o m*/ * @return String (the complete and xml) * @throws DomBuilderException */ static public String identityTransform(ClassLoader classLoader, String input) throws DomBuilderException { String result = ""; try { DocumentBuilderFactory factory = getDocumentBuilderFactory(); Document document; DocumentBuilder builder = factory.newDocumentBuilder(); builder.setEntityResolver(new ClassPathEntityResolver(classLoader)); StringReader sr = new StringReader(input); InputSource src = new InputSource(sr); document = builder.parse(src); Transformer t = XmlUtils.createTransformer(IDENTITY_TRANSFORM); Source s = new DOMSource(document); result = XmlUtils.transformXml(t, s); } catch (Exception tce) { throw new DomBuilderException(tce); } return result; }
From source file:org.ambraproject.service.crossref.CrossRefLookupServiceImpl.java
private Document getArticle(String doi) throws FileStoreException { String fsid = fileStoreService.objectIDMapper().doiTofsid(doi, "XML"); Document doc;/*from w w w. ja v a 2s . c o m*/ InputStream is = fileStoreService.getFileInStream(fsid); try { DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); factory.setNamespaceAware(true); factory.setValidating(false); DocumentBuilder builder = factory.newDocumentBuilder(); EntityResolver resolver = CachedSource.getResolver(XMLServiceImpl.NLM_DTD_URL); builder.setEntityResolver(resolver); doc = builder.parse(is); } catch (Exception e) { log.error("Error parsing the article xml for article " + doi, e); return null; } return doc; }
From source file:org.ambraproject.service.xml.XMLServiceImpl.java
/** * Convenience method to create a DocumentBuilder with the factory configs * * @return Document Builder//from www . java2s. c o m * @throws javax.xml.parsers.ParserConfigurationException */ @Override public DocumentBuilder createDocBuilder() throws ParserConfigurationException { // Create the builder and parse the file final DocumentBuilder builder = factory.newDocumentBuilder(); EntityResolver resolver = validateArticleXml ? CachedSource.getResolver() : CachedSource.getResolver(NLM_DTD_URL); builder.setEntityResolver(resolver); return builder; }