List of usage examples for org.apache.commons.cli HelpFormatter printHelp
public void printHelp(String cmdLineSyntax, Options options)
options with the specified command line syntax. From source file:com.evolveum.midpoint.testing.model.client.sample.RunScript.java
/** * @param args/*from w ww. j a va 2 s .com*/ */ public static void main(String[] args) { try { Options options = new Options(); options.addOption(OPT_HELP, "help", false, "Print this help information"); options.addOption(OPT_SCRIPT, "script", true, "Script file (XML for the moment)"); options.addOption(OPT_URL, true, "Endpoint URL (default: " + DEFAULT_ENDPOINT_URL + ")"); options.addOption(OPT_USER, "user", true, "User name (default: " + ADM_USERNAME + ")"); options.addOption(OPT_PASSWORD, "password", true, "Password"); options.addOption(OPT_FILE_FOR_DATA, "file-for-data", true, "Name of the file to write resulting XML data into"); options.addOption(OPT_FILE_FOR_CONSOLE, "file-for-console", true, "Name of the file to write resulting console output into"); options.addOption(OPT_FILE_FOR_RESULT, "file-for-result", true, "Name of the file to write operation result into"); options.addOption(OPT_HIDE_DATA, "hide-data", false, "Don't display data output"); options.addOption(OPT_HIDE_SCRIPT, "hide-script", false, "Don't display input script"); options.addOption(OPT_HIDE_CONSOLE, "hide-console", false, "Don't display console output"); options.addOption(OPT_HIDE_RESULT, "hide-result", false, "Don't display detailed operation result (default: showing if not SUCCESS)"); options.addOption(OPT_SHOW_RESULT, "show-result", false, "Always show detailed operation result (default: showing if not SUCCESS)"); options.addOption(OptionBuilder.withArgName("property=value").hasArgs(2).withValueSeparator() .withDescription("use value for given property").create("D")); CommandLineParser parser = new GnuParser(); CommandLine cmdline = parser.parse(options, args); if (!cmdline.hasOption(OPT_SCRIPT) || cmdline.hasOption("h")) { HelpFormatter helpFormatter = new HelpFormatter(); helpFormatter.printHelp("runscript", options); System.exit(0); } ExecuteScriptsType request = new ExecuteScriptsType(); String script = readXmlFile(cmdline.getOptionValue(OPT_SCRIPT)); script = replaceParameters(script, cmdline.getOptionProperties("D")); request.setMslScripts(script); // todo fix this hack ExecuteScriptsOptionsType optionsType = new ExecuteScriptsOptionsType(); optionsType.setOutputFormat(OutputFormatType.MSL); // todo fix this hack request.setOptions(optionsType); if (!cmdline.hasOption(OPT_HIDE_SCRIPT)) { System.out.println("\nScript to execute:\n" + script); } System.out.println("================================================================="); ModelPortType modelPort = createModelPort(cmdline); ExecuteScriptsResponseType response = modelPort.executeScripts(request); System.out.println("================================================================="); for (SingleScriptOutputType output : response.getOutputs().getOutput()) { if (!cmdline.hasOption(OPT_HIDE_DATA)) { System.out.println("Data:\n" + output.getMslData()); System.out.println("-----------------------------------------------------------------"); } if (cmdline.hasOption(OPT_FILE_FOR_DATA)) { IOUtils.write(output.getMslData(), new FileOutputStream(cmdline.getOptionValue(OPT_FILE_FOR_DATA)), "UTF-8"); } if (!cmdline.hasOption(OPT_HIDE_CONSOLE)) { System.out.println("Console output:\n" + output.getTextOutput()); } if (cmdline.hasOption(OPT_HIDE_CONSOLE)) { IOUtils.write(output.getMslData(), new FileWriter(cmdline.getOptionValue(OPT_FILE_FOR_CONSOLE))); } } System.out.println("================================================================="); System.out.println("Operation result: " + getResultStatus(response.getResult())); if (!cmdline.hasOption(OPT_HIDE_RESULT) && (cmdline.hasOption(OPT_SHOW_RESULT) || response.getResult() == null || response.getResult().getStatus() != OperationResultStatusType.SUCCESS)) { System.out.println("\n\n" + marshalResult(response.getResult())); } if (cmdline.hasOption(OPT_FILE_FOR_RESULT)) { IOUtils.write(marshalResult(response.getResult()), new FileWriter(cmdline.getOptionValue(OPT_FILE_FOR_RESULT))); } } catch (Exception e) { e.printStackTrace(); System.exit(-1); } }
From source file:diffhunter.DiffHunter.java
/** * @param args the command line arguments * @throws org.apache.commons.cli.ParseException * @throws java.io.IOException// w w w. j a va 2 s . co m */ public static void main(String[] args) throws ParseException, IOException { //String test_ = Paths.get("J:\\VishalData\\additional\\", "Sasan" + "_BDB").toAbsolutePath().toString(); // TODO code application logic here /*args = new String[] { "-i", "-b", "J:\\VishalData\\additional\\Ptbp2_E18_5_cortex_CLIP_mm9_plus_strand_sorted.bed", "-r", "J:\\VishalData\\additional\\mouse_mm9.txt", "-o", "J:\\VishalData" };*/ /*args = new String[] { "-c", "-r", "J:\\VishalData\\additional\\mouse_mm9.txt", "-1", "J:\\VishalData\\Ptbp2_Adult_testis_CLIP_mm9_plus_strand_sorted_BDB", "-2", "J:\\VishalData\\Ptbp2_E18_5_cortex_CLIP_mm9_plus_strand_sorted_BDB", "-w", "200", "-s", "50", "-o", "J:\\VishalData" };*/ Options options = new Options(); // add t option options.addOption("i", "index", false, "Indexing BED files."); options.addOption("b", "bed", true, "bed file to be indexed"); options.addOption("o", "output", true, "Folder that the index/comparison file will be created."); options.addOption("r", "reference", true, "Reference annotation file to be used for indexing"); options.addOption("c", "compare", false, "Finding differences between two conditions"); options.addOption("1", "first", true, "First sample index location"); options.addOption("2", "second", true, "Second sample index location"); options.addOption("w", "window", true, "Length of window for identifying differences"); options.addOption("s", "sliding", true, "Length of sliding"); CommandLineParser parser = new BasicParser(); CommandLine cmd = parser.parse(options, args); boolean indexing = false; boolean comparing = false; //Indexing! if (cmd.hasOption("i")) { //if(cmd.hasOption("1")) //System.err.println("sasan"); //System.out.println("sasa"); indexing = true; } else if (cmd.hasOption("c")) { //System.err.println(""); comparing = true; } else { //System.err.println("Option is not deteced."); HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("diffhunter", options); return; } //Indexing is selected // if (indexing == true) { //Since indexing is true. //User have to provide file for indexing. if (!(cmd.hasOption("o") || cmd.hasOption("r") || cmd.hasOption("b"))) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("diffhunter", options); return; } String bedfile_ = cmd.getOptionValue("b"); String reference_file = cmd.getOptionValue("r"); String folder_loc = cmd.getOptionValue("o"); String sample_name = FilenameUtils.getBaseName(bedfile_); try (Database B2 = BerkeleyDB_Box.Get_BerkeleyDB( Paths.get(folder_loc, sample_name + "_BDB").toAbsolutePath().toString(), true, sample_name)) { Indexer indexing_ = new Indexer(reference_file); indexing_.Make_Index(B2, bedfile_, Paths.get(folder_loc, sample_name + "_BDB").toAbsolutePath().toString()); B2.close(); } } else if (comparing == true) { if (!(cmd.hasOption("o") || cmd.hasOption("w") || cmd.hasOption("s") || cmd.hasOption("1") || cmd.hasOption("2"))) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("diffhunter", options); return; } String folder_loc = cmd.getOptionValue("o"); int window_ = Integer.parseInt(cmd.getOptionValue("w")); //int window_=600; int slide_ = Integer.parseInt(cmd.getOptionValue("s")); String first = cmd.getOptionValue("1").replace("_BDB", ""); String second = cmd.getOptionValue("2").replace("_BDB", ""); String reference_file = cmd.getOptionValue("r"); //String folder_loc=cmd.getOptionValue("o"); String sample_name_first = FilenameUtils.getBaseName(first); String sample_name_second = FilenameUtils.getBaseName(second); Database B1 = BerkeleyDB_Box.Get_BerkeleyDB(first + "_BDB", false, sample_name_first); Database B2 = BerkeleyDB_Box.Get_BerkeleyDB(second + "_BDB", false, sample_name_second); List<String> first_condition_genes = Files .lines(Paths.get(first + "_BDB", sample_name_first + ".txt").toAbsolutePath()) .collect(Collectors.toList()); List<String> second_condition_genes = Files .lines(Paths.get(second + "_BDB", sample_name_second + ".txt").toAbsolutePath()) .collect(Collectors.toList()); System.out.println("First and second condition are loaded!!! "); List<String> intersection_ = new ArrayList<>(first_condition_genes); intersection_.retainAll(second_condition_genes); BufferedWriter output = new BufferedWriter( new FileWriter(Paths.get(folder_loc, "differences_" + window_ + "_s" + slide_ + "_c" + ".txt") .toAbsolutePath().toString(), false)); List<Result_Window> final_results = Collections.synchronizedList(new ArrayList<>()); Worker_New worker_class = new Worker_New(); worker_class.Read_Reference(reference_file); while (!intersection_.isEmpty()) { List<String> selected_genes = new ArrayList<>(); //if (intersection_.size()<=10000){selected_genes.addAll(intersection_.subList(0, intersection_.size()));} //else selected_genes.addAll(intersection_.subList(0, 10000)); if (intersection_.size() <= intersection_.size()) { selected_genes.addAll(intersection_.subList(0, intersection_.size())); } else { selected_genes.addAll(intersection_.subList(0, intersection_.size())); } intersection_.removeAll(selected_genes); //System.out.println("Intersection count is:"+intersection_.size()); //final List<Result_Window> resultssss_=new ArrayList<>(); IntStream.range(0, selected_genes.size()).parallel().forEach(i -> { System.out.println(selected_genes.get(i) + "\tprocessing......"); String gene_of_interest = selected_genes.get(i);//"ENSG00000142657|PGD";//intersection_.get(6);////"ENSG00000163395|IGFN1";//"ENSG00000270066|SCARNA2"; int start = worker_class.dic_genes.get(gene_of_interest).start_loc; int end = worker_class.dic_genes.get(gene_of_interest).end_loc; Map<Integer, Integer> first_ = Collections.EMPTY_MAP; try { first_ = BerkeleyDB_Box.Get_Coord_Read(B1, gene_of_interest); } catch (IOException | ClassNotFoundException ex) { Logger.getLogger(DiffHunter.class.getName()).log(Level.SEVERE, null, ex); } Map<Integer, Integer> second_ = Collections.EMPTY_MAP; try { second_ = BerkeleyDB_Box.Get_Coord_Read(B2, gene_of_interest); } catch (IOException | ClassNotFoundException ex) { Logger.getLogger(DiffHunter.class.getName()).log(Level.SEVERE, null, ex); } List<Window> top_windows_first = worker_class.Get_Top_Windows(window_, first_, slide_); List<Window> top_windows_second = worker_class.Get_Top_Windows(window_, second_, slide_); //System.out.println("passed for window peak call for gene \t"+selected_genes.get(i)); // System.out.println("top_window_first_Count\t"+top_windows_first.size()); // System.out.println("top_window_second_Count\t"+top_windows_second.size()); if (top_windows_first.isEmpty() && top_windows_second.isEmpty()) { return; } List<Result_Window> res_temp = new Worker_New().Get_Significant_Windows(gene_of_interest, start, end, top_windows_first, top_windows_second, second_, first_, sample_name_first, sample_name_second, 0.01); if (!res_temp.isEmpty()) { final_results.addAll(res_temp);//final_results.addAll(worker_class.Get_Significant_Windows(gene_of_interest, start, end, top_windows_first, top_windows_second, second_, first_, first_condition, second_condition, 0.01)); } //System.out.println(selected_genes.get(i)+"\tprocessed."); }); /*selected_genes.parallelStream().forEach(i -> { });*/ List<Double> pvals = new ArrayList<>(); for (int i = 0; i < final_results.size(); i++) { pvals.add(final_results.get(i).p_value); } List<Double> qvals = MultipleTestCorrection.benjaminiHochberg(pvals); System.out.println("Writing to file..."); output.append("Gene_Symbol\tContributing_Sample\tStart\tEnd\tOddsRatio\tp_Value\tFDR"); output.newLine(); for (int i = 0; i < final_results.size(); i++) { Result_Window item = final_results.get(i); output.append(item.associated_gene_symbol + "\t" + item.contributing_windows + "\t" + item.start_loc + "\t" + item.end_loc + "\t" + item.oddsratio_ + "\t" + item.p_value + "\t" + qvals.get(i)); //+ "\t" + item.average_other_readcount_cotributing + "\t" + item.average_other_readcount_cotributing + "\t" + item.average_window_readcount_non + "\t" + item.average_other_readcount_non); output.newLine(); } /* for (Result_Window item : final_results) { output.append(item.associated_gene_symbol + "\t" + item.contributing_windows + "\t" + item.start_loc + "\t" + item.end_loc + "\t" + item.oddsratio_ + "\t" + item.p_value); //+ "\t" + item.average_other_readcount_cotributing + "\t" + item.average_other_readcount_cotributing + "\t" + item.average_window_readcount_non + "\t" + item.average_other_readcount_non); output.newLine(); } */ final_results.clear(); } output.close(); } System.out.println("Done."); }
From source file:com.github.thebigs.foscam.recorder.Recorder.java
public static void main(String[] args) { Options options = new Options(); options.addOption("c", true, "Cam url (eg. http://<ip>:<port>/<stream page>?<params>"); options.addOption("o", true, "Output dir location (default: './'). File names will default to '<YYYY.MM.DD-mm-ss>-<webcam name>.mp4'."); options.addOption("n", true, "Webcam name. Defaults to 'webcam'."); options.addOption("d", true, "Duration (in mins) before cycling to new video file (Defaults to 60mins)."); options.addOption("x", true, "Max disk space (in megabytes [1024kb]) to use before overwritting recordings. Oldest recordings will be overwritten first. Defaults to -1 (unlimited)"); options.addOption("h", false, "Print this help message."); try {/*from ww w . j a v a 2s. c o m*/ CommandLine cli = new GnuParser().parse(options, args); String camUrl = null; String camName = null; String outputDir = null; Long durationMins = null; Long maxDiskSpaceMb = null; if (cli.hasOption("h")) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("java -jar recorder.jar", options); System.exit(-1); } if (cli.hasOption("c")) { camUrl = cli.getOptionValue("c"); } else { System.err.println("Cam Url (-c) is required. Use -h for more information."); System.exit(-1); } if (cli.hasOption("n")) { camName = cli.getOptionValue("n"); } if (cli.hasOption("o")) { outputDir = cli.getOptionValue("o"); } if (cli.hasOption("d")) { durationMins = Long.parseLong(cli.getOptionValue("d")); } if (cli.hasOption("x")) { maxDiskSpaceMb = Long.parseLong(cli.getOptionValue("x")); } Recorder recording = new Recorder(camUrl, camName, outputDir, durationMins, maxDiskSpaceMb); System.out.println("Starting recording..."); recording.run(); // stay here until program is terminated } catch (ParseException e) { System.err.println("Unable to parse command line options: " + e.getMessage()); } catch (Exception e) { System.err.println("Unable to parse command line options: " + e.getMessage()); } }
From source file:luceneGazateer.EntryData.java
public static void main(String[] args) throws IOException { Option buildOpt = OptionBuilder.withArgName("gazetteer file").hasArg().withLongOpt("build") .withDescription("The Path to the Geonames allCountries.txt").create('b'); Option searchOpt = OptionBuilder.withArgName("set of location names").withLongOpt("search").hasArgs() .withDescription("Location names to search the Gazetteer for").create('s'); Option indexOpt = OptionBuilder.withArgName("directoryPath").withLongOpt("index").hasArgs() .withDescription("The path to the Lucene index directory to either create or read").create('i'); Option helpOpt = OptionBuilder.withLongOpt("help").withDescription("Print this message.").create('h'); String indexPath = null;/* w ww .j av a 2s.co m*/ String gazetteerPath = null; ArrayList<String> geoTerms = null; Options options = new Options(); options.addOption(buildOpt); options.addOption(searchOpt); options.addOption(indexOpt); options.addOption(helpOpt); // create the parser CommandLineParser parser = new DefaultParser(); GeoNameResolver resolver = new GeoNameResolver(); try { // parse the command line arguments CommandLine line = parser.parse(options, args); if (line.hasOption("index")) { indexPath = line.getOptionValue("index"); } if (line.hasOption("build")) { gazetteerPath = line.getOptionValue("build"); } if (line.hasOption("help")) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("lucene-geo-gazetteer", options); System.exit(1); } if (indexPath != null && gazetteerPath != null) { LOG.info("Building Lucene index at path: [" + indexPath + "] with geoNames.org file: [" + gazetteerPath + "]"); resolver.buildIndex(gazetteerPath, indexPath); } if (line.hasOption("search")) { String temp_s = ""; for (String string : line.getOptionValues("search")) { temp_s += string; } produceCandidates(indexPath, temp_s, resolver); } } catch (ParseException exp) { // oops, something went wrong System.err.println("Parsing failed. Reason: " + exp.getMessage()); } }
From source file:com.guye.baffle.obfuscate.Main.java
public static void main(String[] args) throws IOException, BaffleException { Options opt = new Options(); opt.addOption("c", "config", true, "config file path,keep or mapping"); opt.addOption("o", "output", true, "output mapping writer file"); opt.addOption("v", "verbose", false, "explain what is being done."); opt.addOption("h", "help", false, "print help for the command."); opt.getOption("c").setArgName("file list"); opt.getOption("o").setArgName("file path"); String formatstr = "baffle [-c/--config filepaths list ][-o/--output filepath][-h/--help] ApkFile TargetApkFile"; HelpFormatter formatter = new HelpFormatter(); CommandLineParser parser = new PosixParser(); CommandLine cl = null;/*from w w w . j a v a 2s . c o m*/ try { // ?Options? cl = parser.parse(opt, args); } catch (ParseException e) { formatter.printHelp(formatstr, opt); // ??? return; } if (cl == null || cl.getArgs() == null || cl.getArgs().length == 0) { formatter.printHelp(formatstr, opt); return; } // ?-h--help?? if (cl.hasOption("h")) { HelpFormatter hf = new HelpFormatter(); hf.printHelp(formatstr, "", opt, ""); return; } // ???DirectoryName String[] str = cl.getArgs(); if (str == null || str.length != 2) { HelpFormatter hf = new HelpFormatter(); hf.printHelp("not specify apk file or taget apk file", opt); return; } if (str[1].equals(str[0])) { HelpFormatter hf = new HelpFormatter(); hf.printHelp("apk file can not rewrite , please specify new target file", opt); return; } File apkFile = new File(str[0]); if (!apkFile.exists()) { HelpFormatter hf = new HelpFormatter(); hf.printHelp("apk file not exists", opt); return; } File[] configs = null; if (cl.hasOption("c")) { String cfg = cl.getOptionValue("c"); String[] fs = cfg.split(","); int len = fs.length; configs = new File[fs.length]; for (int i = 0; i < len; i++) { configs[i] = new File(fs[i]); if (!configs[i].exists()) { HelpFormatter hf = new HelpFormatter(); hf.printHelp("config file " + fs[i] + " not exists", opt); return; } } } File mappingfile = null; if (cl.hasOption("o")) { String mfile = cl.getOptionValue("o"); mappingfile = new File(mfile); if (mappingfile.getParentFile() != null) { mappingfile.getParentFile().mkdirs(); } } if (cl.hasOption('v')) { Logger.getLogger(Obfuscater.LOG_NAME).setLevel(Level.CONFIG); } else { Logger.getLogger(Obfuscater.LOG_NAME).setLevel(Level.OFF); } Logger.getLogger(Obfuscater.LOG_NAME).addHandler(new ConsoleHandler()); Obfuscater obfuscater = new Obfuscater(configs, mappingfile, apkFile, str[1]); obfuscater.obfuscate(); }
From source file:cross.io.PropertyFileGenerator.java
/** * * @param args/*from w ww.j a v a 2 s. c o m*/ */ public static void main(String[] args) { Options options = new Options(); options.addOption("f", true, "base directory for output of files"); Option provOptions = new Option("p", true, "Comma separated list of provider classes to create Properties for"); provOptions.setRequired(true); provOptions.setValueSeparator(','); options.addOption(provOptions); CommandLineParser parser = new PosixParser(); HelpFormatter hf = new HelpFormatter(); try { File basedir = null; List<String> providers = Collections.emptyList(); CommandLine cmd = parser.parse(options, args); if (cmd.hasOption("f")) { basedir = new File(cmd.getOptionValue("f")); } else { hf.printHelp("java -cp maltcms.jar " + PropertyFileGenerator.class, options); } if (cmd.hasOption("p")) { String[] str = cmd.getOptionValues("p"); providers = Arrays.asList(str); } else { hf.printHelp("java -cp maltcms.jar " + PropertyFileGenerator.class, options); } for (String provider : providers) { createProperties(provider, basedir); } } catch (ParseException ex) { Logger.getLogger(PropertyFileGenerator.class.getName()).log(Level.SEVERE, null, ex); } }
From source file:com.example.dlp.DeIdentification.java
/** * Command line application to de-identify data using the Data Loss Prevention API. * Supported data format: strings//from www . j a va 2 s. com */ public static void main(String[] args) throws Exception { OptionGroup optionsGroup = new OptionGroup(); optionsGroup.setRequired(true); Option deidentifyMaskingOption = new Option("m", "mask", true, "deid with character masking"); optionsGroup.addOption(deidentifyMaskingOption); Option deidentifyFpeOption = new Option("f", "fpe", true, "deid with FFX FPE"); optionsGroup.addOption(deidentifyFpeOption); Options commandLineOptions = new Options(); commandLineOptions.addOptionGroup(optionsGroup); Option maskingCharacterOption = Option.builder("maskingCharacter").hasArg(true).required(false).build(); commandLineOptions.addOption(maskingCharacterOption); Option numberToMaskOption = Option.builder("numberToMask").hasArg(true).required(false).build(); commandLineOptions.addOption(numberToMaskOption); Option alphabetOption = Option.builder("commonAlphabet").hasArg(true).required(false).build(); commandLineOptions.addOption(alphabetOption); Option wrappedKeyOption = Option.builder("wrappedKey").hasArg(true).required(false).build(); commandLineOptions.addOption(wrappedKeyOption); Option keyNameOption = Option.builder("keyName").hasArg(true).required(false).build(); commandLineOptions.addOption(keyNameOption); CommandLineParser parser = new DefaultParser(); HelpFormatter formatter = new HelpFormatter(); CommandLine cmd; try { cmd = parser.parse(commandLineOptions, args); } catch (ParseException e) { System.out.println(e.getMessage()); formatter.printHelp(DeIdentification.class.getName(), commandLineOptions); System.exit(1); return; } if (cmd.hasOption("m")) { // deidentification with character masking int numberToMask = Integer.parseInt(cmd.getOptionValue(numberToMaskOption.getOpt(), "0")); char maskingCharacter = cmd.getOptionValue(maskingCharacterOption.getOpt(), "*").charAt(0); String val = cmd.getOptionValue(deidentifyMaskingOption.getOpt()); deIdentifyWithMask(val, maskingCharacter, numberToMask); } else if (cmd.hasOption("f")) { // deidentification with FPE String wrappedKey = cmd.getOptionValue(wrappedKeyOption.getOpt()); String keyName = cmd.getOptionValue(keyNameOption.getOpt()); String val = cmd.getOptionValue(deidentifyFpeOption.getOpt()); FfxCommonNativeAlphabet alphabet = FfxCommonNativeAlphabet.valueOf( cmd.getOptionValue(alphabetOption.getOpt(), FfxCommonNativeAlphabet.ALPHA_NUMERIC.name())); deIdentifyWithFpe(val, alphabet, keyName, wrappedKey); } }
From source file:jeplus.util.LineEnds.java
public static void main(String[] args) { String LN = "\r\n"; // create the parser CommandLineParser parser = new GnuParser(); Options options = getCommandLineOptions(); CommandLine commandline = null;//from ww w . ja v a 2 s. c o m HelpFormatter formatter = new HelpFormatter(); formatter.setWidth(80); try { // parse the command line arguments commandline = parser.parse(options, args); if (commandline.hasOption("help")) { // automatically generate the help statement formatter.printHelp("java -cp jEPlusNet.jar jeplusplus.util.LineEnds [OPTIONS]", options); System.exit(-1); } // Set log4j configuration if (commandline.hasOption("log")) { PropertyConfigurator.configure(commandline.getOptionValue("log")); } else { PropertyConfigurator.configure("log4j.cfg"); } } catch (ParseException exp) { // oops, something went wrong System.err.println("Parsing failed. Reason: " + exp.getMessage()); // automatically generate the help statement formatter.printHelp("java -Xmx500m -jar JESS_Client.jar [OPTIONS]", options); System.exit(-1); } if (commandline.hasOption("style")) { if (commandline.getOptionValue("style").startsWith("L")) { LN = "\n"; } } if (commandline.hasOption("file")) { File file = new File(commandline.getOptionValue("file")); if (file.exists()) { if (file.isDirectory()) { File[] listOfFiles = file.listFiles(); for (int i = 0; i < listOfFiles.length; i++) { if (listOfFiles[i].isFile()) { convertFile(listOfFiles[i], LN); } } } else { convertFile(file, LN); } } } }
From source file:net.cliftonsnyder.svgchart.Main.java
public static void main(String[] args) { Options options = new Options(); options.addOption("c", "stylesheet", true, "CSS stylesheet (default: " + SVGChart.DEFAULT_STYLESHEET + ")"); options.addOption("h", "height", true, "chart height"); options.addOption("i", "input-file", true, "input file [default: stdin]"); options.addOption("o", "output-file", true, "output file [default: stdout]"); options.addOption("w", "width", true, "chart width"); options.addOption("?", "help", false, "print a brief help message"); Option type = new Option("t", "type", true, "chart type " + Arrays.toString(SVGChart.TYPES)); type.setRequired(true);//from w w w.j av a 2 s .co m options.addOption(type); CommandLineParser parser = new GnuParser(); HelpFormatter formatter = new HelpFormatter(); CommandLine line = null; try { // parse the command line arguments line = parser.parse(options, args); if (line.hasOption("help")) { formatter.printHelp(USAGE, options); System.exit(0); } } catch (ParseException exp) { // oops, something went wrong System.err.println("unable to parse command line: " + exp.getMessage()); formatter.printHelp(USAGE, options); System.exit(1); } SVGChart chart = null; String tmp = line.getOptionValue("type"); Matcher m = null; for (Pattern p : SVGChart.TYPE_PATTERNS) { if ((m = p.matcher(tmp)).matches()) { switch (m.group().charAt(0)) { case 'l': // DEBUG System.err.println("line"); break; case 'b': System.err.println("bar"); chart = new BarChart(); break; case 'p': System.err.println("pie"); break; default: System.err.println("unknown or unimplemented chart type: '" + tmp + "'"); System.exit(1); } } } try { chart.setWidth(Double.parseDouble(line.getOptionValue("width", "" + SVGChart.DEFAULT_WIDTH))); } catch (NumberFormatException e) { System.err.println( "unable to parse command line: invalid width value '" + line.getOptionValue("width") + "'"); System.exit(1); } try { chart.setHeight(Double.parseDouble(line.getOptionValue("height", "" + SVGChart.DEFAULT_HEIGHT))); } catch (NumberFormatException e) { System.err.println( "unable to parse command line: invalid height value '" + line.getOptionValue("height") + "'"); System.exit(1); } InputStream in = System.in; tmp = line.getOptionValue("input-file", "-"); if ("-".equals(tmp)) { in = System.in; } else { try { in = new FileInputStream(tmp); } catch (FileNotFoundException e) { System.err.println("input file not found: '" + tmp + "'"); System.exit(1); } } PrintStream out = System.out; tmp = line.getOptionValue("output-file", "-"); if ("-".equals(tmp)) { out = System.out; } else { try { out = new PrintStream(new FileOutputStream(tmp)); } catch (FileNotFoundException e) { System.err.println("output file not found: '" + tmp + "'"); System.exit(1); } } tmp = line.getOptionValue("stylesheet", SVGChart.DEFAULT_STYLESHEET); chart.setStyleSheet(tmp); try { chart.parseInput(in); } catch (IOException e) { System.err.println("I/O error while reading input"); System.exit(1); } catch (net.cliftonsnyder.svgchart.parse.ParseException e) { System.err.println("error parsing input: " + e.getMessage()); } chart.createChart(); try { chart.printChart(out, true); } catch (IOException e) { System.err.println("error serializing output"); System.exit(1); } }
From source file:com.blackducksoftware.integration.hubdiff.HubDiff.java
public static void main(String[] args) throws IOException, IllegalArgumentException, EncryptionException, HubIntegrationException, JSONException { Options options = new Options(); Option optUrl1 = new Option("h1", "hub-url-1", true, "the base url to the hub. Example: http://int-hub01.dc1.lan:8080"); Option optUsername1 = new Option("u1", "username-1", true, "the username for your hub instance"); Option optPassword1 = new Option("p1", "password-1", true, "the password for your hub instance and username"); Option optUrl2 = new Option("h2", "hub-url-2", true, "the base url to the hub. Example: http://int-auto.dc1.lan:9000"); Option optUsername2 = new Option("u2", "username-2", true, "the username for your hub instance"); Option optPassword2 = new Option("p2", "password-2", true, "the password for your hub instance and username"); Option optOutputFile = new Option("o", "output", true, "the file path to your output file"); optUrl1.setRequired(true);//from ww w .ja v a 2 s .co m optUsername1.setRequired(true); optPassword1.setRequired(true); optUsername2.setRequired(true); optUrl1.setRequired(true); optPassword2.setRequired(true); optOutputFile.setRequired(false); // Add options to collection options.addOption(optUrl1); options.addOption(optUsername1); options.addOption(optPassword1); options.addOption(optUrl2); options.addOption(optUsername2); options.addOption(optPassword2); options.addOption(optOutputFile); // Parse the arguments array for the options CommandLineParser cliParser = new DefaultParser(); HelpFormatter formatter = new HelpFormatter(); CommandLine optionParser; try { optionParser = cliParser.parse(options, args); } catch (ParseException e) { formatter.printHelp("hub-model-generator", options); log.error(e.getMessage()); System.exit(1); return; } // Read arguments String url1 = optionParser.getOptionValue("hub-url-1"); String username1 = optionParser.getOptionValue("username-1"); String password1 = optionParser.getOptionValue("password-1"); String url2 = optionParser.getOptionValue("hub-url-2"); String username2 = optionParser.getOptionValue("username-2"); String password2 = optionParser.getOptionValue("password-2"); String outputFilePath = optionParser.getOptionValue("output"); HubServerConfigBuilder configBuilder = new HubServerConfigBuilder(); configBuilder.setHubUrl(url1); configBuilder.setUsername(username1); configBuilder.setPassword(password1); HubServerConfig config1 = configBuilder.build(); HubServerConfigBuilder configBuilder2 = new HubServerConfigBuilder(); configBuilder2.setHubUrl(url2); configBuilder2.setUsername(username2); configBuilder2.setPassword(password2); HubServerConfig config2 = configBuilder2.build(); HubDiff hubDiff = new HubDiff(config1, config2); hubDiff.printDiff(System.out); if (outputFilePath != null) { File outputFile = new File(outputFilePath); hubDiff.writeDiffAsCSV(outputFile); } }