Example usage for org.apache.commons.io FileUtils moveFile

Introduction

In this page you can find the example usage for org.apache.commons.io FileUtils moveFile.

Prototype

public static void moveFile(File srcFile, File destFile) throws IOException 

Source Link

Document

Moves a file.

Usage

From source file:fm.last.commons.io.LastFileUtils.java

/**
 * Moves a file "safely" - first copies it to the destination with ".part" appended to the filename, and then renames
 * it. This is useful for copying files to locations where files with certain extensions are processed. The rename
 * step should be a lot quicker than the copying step, preventing the file from being processed before it is fully
 * copied./*w  w  w  . ja  v  a 2s .c o  m*/
 * 
 * @param srcFile Source file.
 * @param destFile Destination file.
 * @throws IOException If an error occurrs moving the file.
 */
public static void moveFileSafely(File srcFile, File destFile) throws IOException {
    File partFile = new File(destFile.getParentFile(), destFile.getName() + ".part");
    FileUtils.moveFile(srcFile, partFile);
    if (!partFile.renameTo(destFile)) {
        throw new IOException(
                "Error renaming " + partFile.getAbsolutePath() + " to " + destFile.getAbsolutePath());
    }
}

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From source file:edu.cornell.med.icb.goby.alignments.UpgradeTo1_9_6.java

private void writeIndex(String basename, LongArrayList indexOffsets, LongArrayList indexAbsolutePositions)
        throws IOException {
    GZIPOutputStream indexOutput = null;
    try {/*from w ww  .  j a  va 2s  .c  om*/
        FileUtils.moveFile(new File(basename + ".index"),
                new File(makeBackFilename(basename + ".index", ".bak")));
        indexOutput = new GZIPOutputStream(new FileOutputStream(basename + ".index"));
        final Alignments.AlignmentIndex.Builder indexBuilder = Alignments.AlignmentIndex.newBuilder();
        assert (indexOffsets.size() == indexAbsolutePositions.size()) : "index sizes must be consistent.";
        indexBuilder.addAllOffsets(indexOffsets);
        indexBuilder.addAllAbsolutePositions(indexAbsolutePositions);
        indexBuilder.build().writeTo(indexOutput);
    } finally {
        if (indexOutput != null)
            indexOutput.close();

    }
}

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From source file:de.egore911.versioning.deployer.performer.PerformCopy.java

private boolean copy(String uri, String target, String targetFilename) {
    URL url;//from w  w w .  j a  v a  2s.  co m
    try {
        url = new URL(uri);
    } catch (MalformedURLException e) {
        LOG.error("Invalid URI: {}", e.getMessage(), e);
        return false;
    }
    try {
        HttpURLConnection connection = (HttpURLConnection) url.openConnection();
        int response = connection.getResponseCode();

        int lastSlash = uri.lastIndexOf('/');
        if (lastSlash < 0) {
            LOG.error("Invalid URI: {}", uri);
            return false;
        }

        int lastDot = uri.lastIndexOf('.');
        if (lastDot < 0) {
            LOG.error("Invalid URI: {}", uri);
            return false;
        }

        String filename;
        if (StringUtils.isEmpty(targetFilename)) {
            filename = uri.substring(lastSlash + 1);
        } else {
            filename = targetFilename;
        }

        XmlHolder xmlHolder = XmlHolder.getInstance();
        XPathExpression finalNameXpath = xmlHolder.xPath.compile("/project/build/finalName/text()");

        if (response == HttpURLConnection.HTTP_OK) {
            String downloadFilename = UrlUtil.concatenateUrlWithSlashes(target, filename);

            File downloadFile = new File(downloadFilename);
            FileUtils.forceMkdir(downloadFile.getParentFile());
            try (InputStream in = connection.getInputStream();
                    FileOutputStream out = new FileOutputStream(downloadFilename)) {
                IOUtils.copy(in, out);
            }
            LOG.debug("Downloaded {} to {}", url, downloadFilename);

            if (StringUtils.isEmpty(targetFilename)) {
                // Check if finalName if exists in pom.xml
                String destFile = null;
                try (ZipFile zipFile = new ZipFile(downloadFilename)) {
                    Enumeration<? extends ZipEntry> entries = zipFile.entries();
                    while (entries.hasMoreElements()) {
                        ZipEntry entry = entries.nextElement();
                        if (entry.getName().endsWith("/pom.xml")) {

                            String finalNameInPom;
                            try (InputStream inputStream = zipFile.getInputStream(entry)) {
                                try {
                                    MavenXpp3Reader mavenreader = new MavenXpp3Reader();
                                    Model model = mavenreader.read(inputStream);
                                    finalNameInPom = model.getBuild().getFinalName();
                                } catch (Exception e) {
                                    Document doc = xmlHolder.documentBuilder.parse(inputStream);
                                    finalNameInPom = (String) finalNameXpath.evaluate(doc,
                                            XPathConstants.STRING);
                                }
                            }

                            if (StringUtils.isNotEmpty(finalNameInPom)) {
                                destFile = UrlUtil.concatenateUrlWithSlashes(target,
                                        finalNameInPom + "." + uri.substring(lastDot + 1));
                            }
                            break;
                        }
                    }
                }

                // Move file to finalName if existed in pom.xml
                if (destFile != null) {
                    try {
                        File dest = new File(destFile);
                        if (dest.exists()) {
                            FileUtils.forceDelete(dest);
                        }
                        FileUtils.moveFile(downloadFile.getAbsoluteFile(), dest.getAbsoluteFile());
                        LOG.debug("Moved file from {} to {}", downloadFilename, destFile);
                    } catch (IOException e) {
                        LOG.error("Failed to move file to it's final name: {}", e.getMessage(), e);
                    }
                }
            }

            return true;
        } else {
            LOG.error("Could not download file: {}", uri);
            return false;
        }
    } catch (SAXException | IOException | XPathExpressionException e) {
        LOG.error("Could not download file ({}): {}", uri, e.getMessage(), e);
        return false;
    }
}

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From source file:eu.openanalytics.rsb.component.DirectoryDepositHandler.java

public void handleJob(final Message<File> message) throws IOException {
    final DepositDirectoryConfiguration depositDirectoryConfiguration = message.getHeaders()
            .get(DIRECTORY_CONFIG_HEADER_NAME, DepositDirectoryConfiguration.class);

    final String applicationName = depositDirectoryConfiguration.getApplicationName();
    final File dataFile = message.getPayload();

    final File depositRootDirectory = dataFile.getParentFile().getParentFile();
    final File acceptedDirectory = new File(depositRootDirectory, Configuration.DEPOSIT_ACCEPTED_SUBDIR);

    final File acceptedFile = new File(acceptedDirectory, dataFile.getName());
    FileUtils.deleteQuietly(acceptedFile); // in case a similar job already
                                           // exists
    FileUtils.moveFile(dataFile, acceptedFile);

    final Map<String, Serializable> meta = new HashMap<String, Serializable>();
    meta.put(DEPOSIT_ROOT_DIRECTORY_META_NAME, depositRootDirectory);
    meta.put(ORIGINAL_FILENAME_META_NAME, dataFile.getName());
    meta.put(INBOX_DIRECTORY_META_NAME, dataFile.getParent());

    final MultiFilesJob job = new MultiFilesJob(Source.DIRECTORY, applicationName, getUserName(),
            UUID.randomUUID(), (GregorianCalendar) GregorianCalendar.getInstance(), meta);

    try {/*from  www.j  a va2 s . com*/
        if (FilenameUtils.isExtension(acceptedFile.getName().toLowerCase(), "zip")) {
            MultiFilesJob.addZipFilesToJob(new FileInputStream(acceptedFile), job);
        } else {
            MultiFilesJob.addDataToJob(new MimetypesFileTypeMap().getContentType(acceptedFile),
                    acceptedFile.getName(), new FileInputStream(acceptedFile), job);
        }

        final String jobConfigurationFileName = depositDirectoryConfiguration.getJobConfigurationFileName();

        if (StringUtils.isNotBlank(jobConfigurationFileName)) {
            final File jobConfigurationFile = getJobConfigurationFile(applicationName,
                    jobConfigurationFileName);

            job.addFile(Constants.MULTIPLE_FILES_JOB_CONFIGURATION, new FileInputStream(jobConfigurationFile));
        }

        getMessageDispatcher().dispatch(job);
    } catch (final Exception e) {
        final MultiFilesResult errorResult = job.buildErrorResult(e, getMessages());
        handleResult(errorResult);
    }
}

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From source file:io.fabric8.maven.generator.springboot.SpringBootGenerator.java

private void copyFilesToFatJar(List<File> libs, List<File> classes, File target) throws IOException {
    File tmpZip = File.createTempFile(target.getName(), null);
    tmpZip.delete();/*from ww w . ja  v a 2  s.c  o  m*/

    // Using Apache commons rename, because renameTo has issues across file systems
    FileUtils.moveFile(target, tmpZip);

    byte[] buffer = new byte[8192];
    ZipInputStream zin = new ZipInputStream(new FileInputStream(tmpZip));
    ZipOutputStream out = new ZipOutputStream(new FileOutputStream(target));
    for (ZipEntry ze = zin.getNextEntry(); ze != null; ze = zin.getNextEntry()) {
        if (matchesFatJarEntry(libs, ze.getName(), true) || matchesFatJarEntry(classes, ze.getName(), false)) {
            continue;
        }
        out.putNextEntry(ze);
        for (int read = zin.read(buffer); read > -1; read = zin.read(buffer)) {
            out.write(buffer, 0, read);
        }
        out.closeEntry();
    }

    for (File lib : libs) {
        try (InputStream in = new FileInputStream(lib)) {
            out.putNextEntry(createZipEntry(lib, getFatJarFullPath(lib, true)));
            for (int read = in.read(buffer); read > -1; read = in.read(buffer)) {
                out.write(buffer, 0, read);
            }
            out.closeEntry();
        }
    }

    for (File cls : classes) {
        try (InputStream in = new FileInputStream(cls)) {
            out.putNextEntry(createZipEntry(cls, getFatJarFullPath(cls, false)));
            for (int read = in.read(buffer); read > -1; read = in.read(buffer)) {
                out.write(buffer, 0, read);
            }
            out.closeEntry();
        }
    }

    out.close();
    tmpZip.delete();
}

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From source file:gov.nih.nci.caintegrator.file.FileManagerImpl.java

/**
 * {@inheritDoc}//  w w  w  .j  a  va 2s  .c o m
 */
public ResultsZipFile createInputZipFile(StudySubscription studySubscription, AbstractPersistedAnalysisJob job,
        String filename, File... files) {
    try {
        File inputParametersFile = createNewStudySubscriptionFile(studySubscription,
                "inputParameters_" + System.currentTimeMillis() + ".txt");
        job.writeJobDescriptionToFile(inputParametersFile);
        Set<File> fileSet = new HashSet<File>(Arrays.asList(files));
        fileSet.add(inputParametersFile);
        File tmpZipFile = new File(ZipUtils.writeZipFile(fileSet));
        ResultsZipFile inputZipFile = new ResultsZipFile();
        inputZipFile.setPath(createNewStudySubscriptionFile(studySubscription, filename).getAbsolutePath());
        FileUtils.moveFile(tmpZipFile, inputZipFile.getFile());
        inputParametersFile.delete();
        return inputZipFile;
    } catch (IOException e) {
        throw new IllegalArgumentException("Couldn't create the input zip file.", e);
    }
}

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From source file:com.ikanow.infinit.e.harvest.extraction.document.file.InfiniteFile.java

public void rename(String newPathName) throws IOException {
    if (null != _smbFile) {
        try {//  w w  w  .ja  v a  2 s  .  c o  m
            if (null != _auth) {
                _smbFile.renameTo(new SmbFile(newPathName, _auth));
            } else {
                _smbFile.renameTo(new SmbFile(newPathName));
            }
        } catch (SmbException e) {
            throw new IOException(e.getMessage());
        }
    } //TESTED (2a.5.*, 2b.5.* - various success and fail)
    else if (null != _localFile) {
        InfiniteFile toRename = InfiniteFile.create(newPathName);
        File dest = toRename._localFile;
        if (!dest.getParentFile().exists()) {
            throw new IOException("Rename failed: parent directory doesn't exist");
        }
        FileUtils.moveFile(_localFile, dest);
    } //TESTED (1a.5.*, 1b.5.* - various success and fail)
    else {
        throw new IOException("Operation (rename) not supported");
    } //TESTED (InternalInfiniteFile, 7.9)
}

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From source file:com.seleniumtests.ut.reporter.TestTestStep.java

@Test(groups = { "ut" })
public void testSnapshotRenamingWithSubFolder() throws IOException {
    TestStep step = new TestStep("step1", null, new ArrayList<>());
    ScreenShot screenshot = new ScreenShot();

    File tmpImgFile = File.createTempFile("img", ".png");
    File tmpImgFile2 = Paths.get(tmpImgFile.getParent(), "screenshots", tmpImgFile.getName()).toFile();
    FileUtils.moveFile(tmpImgFile, tmpImgFile2);
    File tmpHtmlFile = File.createTempFile("html", ".html");
    File tmpHtmlFile2 = Paths.get(tmpHtmlFile.getParent(), "htmls", tmpHtmlFile.getName()).toFile();
    FileUtils.moveFile(tmpHtmlFile, tmpHtmlFile2);

    screenshot.setOutputDirectory(tmpImgFile.getParent());
    screenshot.setLocation("http://mysite.com");
    screenshot.setTitle("mysite");
    screenshot.setImagePath("screenshots/" + tmpImgFile2.getName());
    screenshot.setHtmlSourcePath("htmls/" + tmpHtmlFile2.getName());

    step.addSnapshot(new Snapshot(screenshot), 0, null);

    Assert.assertEquals(step.getSnapshots().get(0).getScreenshot().getImagePath(),
            "screenshots/N-A_0-1_step1-" + tmpImgFile2.getName());
    Assert.assertEquals(step.getSnapshots().get(0).getScreenshot().getHtmlSourcePath(),
            "htmls/N-A_0-1_step1-" + tmpHtmlFile2.getName());
}

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From source file:com.fusesource.example.camel.ingest.FileIngestorRouteBuilderTest.java

protected void createAndMoveFile(AggregateRecordType agt) throws Exception {
    File testFile = new File("./target/test.xml");

    if (testFile.exists()) {
        testFile.delete();//from  w  w  w. j a  v  a2 s  .c om
    }

    ObjectFactory objFact = new ObjectFactory();
    JAXBContext context = JAXBContext.newInstance(ObjectFactory.class);
    Marshaller m = context.createMarshaller();
    m.marshal(objFact.createAggregateRecord(agt), testFile);
    // not really atomic, but it works for tests
    FileUtils.moveFile(testFile, new File(pollingFolder, "test.xml"));
}

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From source file:gov.nih.nci.caintegrator.application.analysis.grid.preprocess.PreprocessDatasetGridRunner.java

private File replaceGctFileWithPreprocessed(File gctFile, File zipFile) throws IOException {
    File zipFileDirectory = new File(zipFile.getParent().concat("/tempPreprocessedZipDir"));
    FileUtils.deleteDirectory(zipFileDirectory);
    FileUtils.forceMkdir(zipFileDirectory);
    FileUtils.waitFor(zipFileDirectory, TIMEOUT_SECONDS);
    Cai2Util.isValidZipFile(zipFile);
    ZipUtilities.unzip(zipFile, zipFileDirectory);
    FileUtils.waitFor(zipFileDirectory, TIMEOUT_SECONDS);
    Cai2Util.printDirContents(zipFileDirectory);
    if (zipFileDirectory.list() != null) {
        if (zipFileDirectory.list().length != 1) {
            int dirListlength = zipFileDirectory.list().length;
            FileUtils.deleteDirectory(zipFileDirectory);
            throw new IllegalStateException("The zip file returned from PreprocessDataset"
                    + " should have exactly 1 file instead of " + dirListlength);
        }/* ww w .jav a 2s  .  c om*/
    } else {
        String zipFileDirectoryPath = zipFileDirectory.getAbsolutePath();
        FileUtils.deleteDirectory(zipFileDirectory);
        throw new IllegalStateException(
                "The zip file directory list at path: " + zipFileDirectoryPath + "is null.");
    }
    String[] files = zipFileDirectory.list();
    File preprocessedFile = new File(zipFileDirectory, files[0]);
    FileUtils.deleteQuietly(gctFile); // Remove the non-preprocessed file
    FileUtils.moveFile(preprocessedFile, gctFile); // move to gctFile
    FileUtils.deleteQuietly(zipFile);
    FileUtils.deleteDirectory(zipFileDirectory);
    return gctFile;
}

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