Example usage for org.apache.commons.io FileUtils moveFile

List of usage examples for org.apache.commons.io FileUtils moveFile

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Introduction

In this page you can find the example usage for org.apache.commons.io FileUtils moveFile.

Prototype

public static void moveFile(File srcFile, File destFile) throws IOException

Source Link

Document

Moves a file.

Usage

From source file:com.netflix.priam.backup.MetaData.java

public static File createTmpMetaFile() throws IOException {
    File metafile = File.createTempFile("meta", ".json");
    File destFile = new File(metafile.getParent(), "meta.json");
    if (destFile.exists())
        destFile.delete();// w  w  w .j ava  2  s .  c o m
    FileUtils.moveFile(metafile, destFile);
    return destFile;
}

From source file:fr.acxio.tools.agia.io.AbstractFileOperations.java

protected void moveFile(Resource sOriginFile, Resource sDestinationFile) throws IOException {
    File aOrigineFile = sOriginFile.getFile();
    if (aOrigineFile.isFile()) {
        if (!isDirectory(sDestinationFile)) {
            FileUtils.moveFile(aOrigineFile, sDestinationFile.getFile());
        } else {/*from  ww w  . ja v  a 2 s.  co  m*/
            FileUtils.moveFileToDirectory(aOrigineFile, sDestinationFile.getFile(), true);
        }
    } else {
        FileUtils.moveDirectoryToDirectory(aOrigineFile, sDestinationFile.getFile(), true);
    }
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.clinicalData.SetTermsListener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".words.tmp");
    try {/*w ww .  ja  v  a 2 s . c  o m*/
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write("Filename\tColumn Number\tOriginal Data Value\tNew Data Value\n");
        //  
        HashMap<String, Vector<String>> oldValues = this.setTermsUI.getOldValues();
        HashMap<String, Vector<String>> newValues = this.setTermsUI.getNewValues();

        for (String fullName : oldValues.keySet()) {
            File rawFile = new File(this.dataType.getPath() + File.separator + fullName.split(" - ", -1)[0]);
            String header = fullName.split(" - ", -1)[1];
            int columnNumber = FileHandler.getHeaderNumber(rawFile, header);
            for (int i = 0; i < oldValues.get(fullName).size(); i++) {
                if (newValues.get(fullName).elementAt(i).compareTo("") != 0) {
                    out.write(rawFile.getName() + "\t" + columnNumber + "\t"
                            + oldValues.get(fullName).elementAt(i) + "\t" + newValues.get(fullName).elementAt(i)
                            + "\n");
                }
            }
        }

        out.close();
        try {
            File fileDest;
            if (((ClinicalData) this.dataType).getWMF() != null) {
                String fileName = ((ClinicalData) this.dataType).getWMF().getName();
                ((ClinicalData) this.dataType).getWMF().delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".words");
            }
            FileUtils.moveFile(file, fileDest);
            ((ClinicalData) this.dataType).setWMF(fileDest);
        } catch (IOException ioe) {
            this.setTermsUI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setTermsUI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setTermsUI.displayMessage("Word mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
    UsedFilesPart.sendFilesChanged(dataType);
}

From source file:de.openflorian.alarm.archive.AlarmFaxArchiver.java

/**
 * Takes given <code>event</code> and moves the parsed and transformed Alarm
 * Fax TIF and TXT files to the//from   w w  w .j a  va  2 s .  com
 * {@link AlarmFaxArchiver#CONFIG_ARCHIVATION_DIRECTORY}
 * 
 * @param event
 */
private void archive(Message<Object> msg) {
    final String toArchive = msg.body().toString();

    if (log.isDebugEnabled())
        log.debug("Archiving file: " + toArchive);

    final File toArchiveFile = new File(toArchive);

    if (toArchiveFile.exists()) {
        SimpleDateFormat format = new SimpleDateFormat("yyyyMMdd_HHmmss");
        try {
            final String archiveTarget = String.format("%s%s%s_%s", faxArchivationDirectory, File.separator,
                    format.format(new Date()), toArchiveFile.getName());
            if (log.isDebugEnabled())
                log.debug("Archiving target: " + archiveTarget);

            FileUtils.moveFile(toArchiveFile, new File(archiveTarget));
        } catch (Exception e) {
            log.error(e.getMessage(), e);
        }
    } else {
        log.error("File does not exist: " + toArchive);
    }
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.snpData.SetPlatformListener.java

@Override
public void handleEvent(Event event) {
    Vector<String> values = this.ui.getValues();
    Vector<String> samples = this.ui.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File mappingFile = ((SnpData) this.dataType).getMappingFile();
    if (mappingFile == null) {
        this.ui.displayMessage("Error: no subject to sample mapping file");
    }/*from  ww  w.  j  av a2  s  .  co  m*/
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);

        try {
            BufferedReader br = new BufferedReader(new FileReader(mappingFile));
            String line;
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String platform;
                if (samples.contains(sample)) {
                    platform = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + platform
                        + "\t" + fields[5] + "\t" + fields[6] + "\t" + fields[7] + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.ui.displayMessage("Error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (mappingFile != null) {
                String fileName = mappingFile.getName();
                mappingFile.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((SnpData) this.dataType).setMappingFile(fileDest);
        } catch (IOException ioe) {
            this.ui.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.ui.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.ui.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:com.digitalgeneralists.assurance.model.merge.TargetMergeEngine.java

@Override
public void mergeResult(ComparisonResult result, IProgressMonitor monitor)
        throws AssuranceNullFileReferenceException {
    File sourceFile = result.getSource().getFile();
    File targetFile = result.getTarget().getFile();

    if ((sourceFile == null) || (targetFile == null)) {
        throw new AssuranceNullFileReferenceException("The source or target file is null.");
    }/*from   www . jav a 2  s.c  o m*/

    if (monitor != null) {
        StringBuilder message = new StringBuilder(512);
        monitor.publish(message.append("Merging ").append(targetFile.toString()).append(" to ")
                .append(sourceFile.toString()).toString());
        message.setLength(0);
        message = null;
    }

    if (targetFile.exists()) {
        try {
            if (targetFile.isDirectory()) {
                FileUtils.copyDirectory(targetFile, sourceFile);
            } else {
                FileUtils.copyFile(targetFile, sourceFile);
            }
            result.setResolution(AssuranceResultResolution.REPLACE_SOURCE);
        } catch (IOException e) {
            logger.error("An error occurred when replacing the source with the target.");
            result.setResolution(AssuranceResultResolution.PROCESSING_ERROR_ENCOUNTERED);
            result.setResolutionError(e.getMessage());
        }
    } else {
        if (sourceFile.exists()) {
            File scanDeletedItemsLocation = result
                    .getSourceDeletedItemLocation(getApplicationDeletedItemsLocation());
            if (scanDeletedItemsLocation == null) {
                StringBuilder deletedFilePath = new StringBuilder(512);
                scanDeletedItemsLocation = new File(
                        deletedFilePath.append(this.getDefaultDeletedItemsLocation()).append(File.separator)
                                .append(sourceFile.getName()).toString());
                deletedFilePath.setLength(0);
            }
            try {
                if (sourceFile.isDirectory()) {
                    FileUtils.moveDirectory(sourceFile, scanDeletedItemsLocation);
                } else {
                    FileUtils.moveFile(sourceFile, scanDeletedItemsLocation);
                }
                result.setResolution(AssuranceResultResolution.DELETE_SOURCE);
            } catch (IOException e) {
                StringBuffer message = new StringBuffer(512);
                logger.error(message.append("Could not move item to deleted items location ")
                        .append(sourceFile.getPath()));
                message.setLength(0);
                message = null;
                result.setResolution(AssuranceResultResolution.PROCESSING_ERROR_ENCOUNTERED);
                result.setResolutionError(e.getMessage());
            }
            scanDeletedItemsLocation = null;
        }
    }

    sourceFile = null;
    targetFile = null;
}

From source file:com.digitalgeneralists.assurance.model.merge.SourceMergeEngine.java

@Override
public void mergeResult(ComparisonResult result, IProgressMonitor monitor)
        throws AssuranceNullFileReferenceException {
    File sourceFile = result.getSource().getFile();
    File targetFile = result.getTarget().getFile();

    if ((sourceFile == null) || (targetFile == null)) {
        throw new AssuranceNullFileReferenceException("The source or target file is null.");
    }/*w  w  w  .j av a  2s  .c o  m*/

    if (monitor != null) {
        StringBuilder message = new StringBuilder(512);
        monitor.publish(message.append("Merging ").append(sourceFile.toString()).append(" to ")
                .append(targetFile.toString()).toString());
        message.setLength(0);
        message = null;
    }

    if (sourceFile.exists()) {
        try {
            if (sourceFile.isDirectory()) {
                FileUtils.copyDirectory(sourceFile, targetFile);
            } else {
                FileUtils.copyFile(sourceFile, targetFile);
            }
            result.setResolution(AssuranceResultResolution.REPLACE_TARGET);
        } catch (IOException e) {
            logger.error("An error occurred when replacing the target with the source.");
            result.setResolution(AssuranceResultResolution.PROCESSING_ERROR_ENCOUNTERED);
            result.setResolutionError(e.getMessage());
        }
    } else {
        if (targetFile.exists()) {
            File scanDeletedItemsLocation = result
                    .getTargetDeletedItemLocation(getApplicationDeletedItemsLocation());
            if (scanDeletedItemsLocation == null) {
                StringBuilder deletedItemPath = new StringBuilder(512);
                scanDeletedItemsLocation = new File(
                        deletedItemPath.append(this.getDefaultDeletedItemsLocation()).append(File.separator)
                                .append(targetFile.getName()).toString());
                deletedItemPath.setLength(0);
                deletedItemPath = null;
            }
            try {
                if (targetFile.isDirectory()) {
                    FileUtils.moveDirectory(targetFile, scanDeletedItemsLocation);
                } else {
                    FileUtils.moveFile(targetFile, scanDeletedItemsLocation);
                }
                result.setResolution(AssuranceResultResolution.DELETE_TARGET);
            } catch (IOException e) {
                StringBuffer message = new StringBuffer(512);
                logger.warn(message.append("Could not move item to deleted items location ")
                        .append(sourceFile.getPath()));
                message.setLength(0);
                message = null;
                result.setResolution(AssuranceResultResolution.PROCESSING_ERROR_ENCOUNTERED);
                result.setResolutionError(e.getMessage());
            }
            scanDeletedItemsLocation = null;
        }
    }

    sourceFile = null;
    targetFile = null;
}

From source file:com.digitalgeneralists.assurance.model.merge.MergeEngine.java

public void restoreDeletedItem(ComparisonResult result, IProgressMonitor monitor) {
    File file = null;//from   w  w  w. j a v a  2 s.co  m
    File deletedFile = null;
    if (result.getResolution() == AssuranceResultResolution.DELETE_SOURCE) {
        file = result.getSource().getFile();
        deletedFile = result.getSourceDeletedItemLocation(getApplicationDeletedItemsLocation());
    }
    if (result.getResolution() == AssuranceResultResolution.DELETE_TARGET) {
        file = result.getTarget().getFile();
        deletedFile = result.getTargetDeletedItemLocation(getApplicationDeletedItemsLocation());
    }

    if (file != null) {
        if (monitor != null) {
            StringBuilder message = new StringBuilder(512);
            monitor.publish(message.append("Restoring ").append(file.toString()).toString());
            message.setLength(0);
            message = null;
        }

        if (deletedFile.exists()) {
            try {
                FileUtils.moveFile(deletedFile, file);
                result.setResolution(AssuranceResultResolution.UNRESOLVED);
            } catch (IOException e) {
                StringBuffer message = new StringBuffer(512);
                logger.warn(message.append("Could not move item from deleted items location ")
                        .append(deletedFile.getPath()));
                message.setLength(0);
                message = null;
            }
        } else {
            logger.warn("Item to restore does not exist.");
            result.setResolution(AssuranceResultResolution.PROCESSING_ERROR_ENCOUNTERED);
            result.setResolutionError("Item to restore does not exist.");
        }
    }

    file = null;
    deletedFile = null;
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.snpData.SetTissueListener.java

@Override
public void handleEvent(Event event) {
    Vector<String> values = this.ui.getValues();
    Vector<String> samples = this.ui.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File mappingFile = ((SnpData) this.dataType).getMappingFile();
    if (mappingFile == null) {
        this.ui.displayMessage("Error: no subject to sample mapping file");
    }/*from  w w w. ja v a 2  s  .  c  o m*/
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);

        try {
            BufferedReader br = new BufferedReader(new FileReader(mappingFile));
            String line;
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String tissueType;
                if (samples.contains(sample)) {
                    tissueType = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + fields[4]
                        + "\t" + tissueType + "\t" + fields[6] + "\t" + fields[7] + "\t" + "PLATFORM+TISSUETYPE"
                        + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.ui.displayMessage("File error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (mappingFile != null) {
                String fileName = mappingFile.getName();
                mappingFile.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((SnpData) this.dataType).setMappingFile(fileDest);
        } catch (IOException ioe) {
            this.ui.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.ui.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.ui.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:com.twitter.hraven.hadoopJobMonitor.jmx.WhiteList.java

public synchronized String store() throws IOException {
    referesh();/*from  w w w.ja  v a2s  . co m*/
    String filePath = whiteListDir + "/" + WHITELIST_FILENAME;
    String newFilePath = filePath + ".new";
    PrintWriter writer = null;
    try {
        writer = new PrintWriter(newFilePath, "UTF-8");
        Iterator<Map.Entry<String, Date>> iterator = expirationMap.entrySet().iterator();
        while (iterator.hasNext()) {
            Map.Entry<String, Date> entry = iterator.next();
            Date date = entry.getValue();
            writer.println(entry.getKey() + " " + date.getTime() + " " + date);
        }
    } finally {
        if (writer != null)
            writer.close();
    }
    // copy the new file to the standard place
    File file = new File(filePath);
    File newFile = new File(newFilePath);
    file.delete();
    FileUtils.moveFile(newFile, file);
    LOG.warn("WhiteList stored to " + filePath);
    return "Stored in " + filePath;
}