Example usage for org.apache.commons.io FileUtils readLines

Introduction

In this page you can find the example usage for org.apache.commons.io FileUtils readLines.

Prototype

public static List readLines(File file) throws IOException 

Source Link

Document

Reads the contents of a file line by line to a List of Strings using the default encoding for the VM.

Usage

From source file:dk.nsi.haiba.lprimporter.testdata.SQLStatementsFromCSVFiles.java

private void generateDiagnosesData() throws IOException {
    File file = FileUtils.toFile(getClass().getClassLoader().getResource("data/T_DIAG.csv"));
    boolean first = true;
    List<String> lines = FileUtils.readLines(file);
    for (String line : lines) {
        if (first) {
            // first row is column metadata
            first = false;//from  w w  w . ja v  a  2  s .  co m
            continue;
        }

        String[] splits = line.split(",");
        String recnum = splits[0];
        String code = splits[1];
        String tillaeg = splits[2];
        String type = "A";

        StringBuffer sql = new StringBuffer();
        sql.append("INSERT INTO T_DIAG (V_RECNUM, C_DIAG, C_TILDIAG, C_DIAGTYPE) VALUES (");
        sql.append(recnum);
        sql.append(", '");
        sql.append(code);
        sql.append("', '");
        sql.append(tillaeg);
        sql.append("', '");
        sql.append(type);
        sql.append("');");

        System.out.println(sql.toString());
    }
}

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From source file:com.bitplan.pdfindex.TestPdfindexer.java

@Test
public void testSorting() throws IOException {
    String htmlOutputFileName = "test/cajunfiles.html";
    String[] args = { "--sourceFileList", "test/cajunfiles.lst", "--idxfile", "test/indices/cajunfiles",
            "--keyWords", "Adobe,IBM,MS-DOS", "--outputfile", htmlOutputFileName };
    this.testPdfIndexer(args);
    List<String> lines = FileUtils.readLines(new File(htmlOutputFileName));
    checkLines(lines, 49, 16, "cajun.pdf#page=1");
}

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From source file:edu.isi.pfindr.learn.util.PairsFileIO.java

public void generatePairsFromTwoDifferentFilesWithClass(String inputFilePath1, String inputFilePath2,
        String outputFilePath) {/*w  ww  .j a v  a2 s. c  o m*/

    List<String> phenotypeList1 = new ArrayList<String>();
    List<String> phenotypeList2 = new ArrayList<String>();
    try {
        phenotypeList1 = FileUtils.readLines(new File(inputFilePath1));
        phenotypeList2 = FileUtils.readLines(new File(inputFilePath2));
    } catch (IOException ioe) {
        ioe.printStackTrace();
    }
    String[] phenotype1, phenotype2;
    StringBuffer outputBuffer = new StringBuffer();

    //List<String> resultList = new ArrayList<String>();
    BufferedWriter bw = null;
    try {
        bw = new BufferedWriter(new FileWriter(outputFilePath));
        int count = 0;

        for (int i = 0; i < phenotypeList1.size(); i++) {
            phenotype1 = phenotypeList1.get(i).split("\t");
            for (int j = 0; j < phenotypeList2.size(); j++) {
                count++;
                phenotype2 = phenotypeList2.get(j).split("\t");
                System.out.println("i " + i + "j " + j + "  " + phenotype1[0] + " " + phenotype2[0]);
                if (phenotype1[1].equals(phenotype2[1])) { //if the classes are the same
                    //if (phenotype1[1].equals(phenotype2[0])) { //if the classes are the same

                    //resultList.add(String.format("%s\t%s\t%d", phenotype1[3], phenotype2[3], 1));
                    //resultList.add(String.format("%s\t%s\t%d", phenotype1[0], phenotype2[1], 1));
                    outputBuffer.append(String.format("%s\t%s\t%d", phenotype1[0], phenotype2[0], 1))
                            .append("\n");
                    //bw.write(String.format("%s\t%s\t%d", phenotype1[0], phenotype2[0], 1) + "\n");
                } else {
                    //resultList.add(String.format("%s\t%s\t%d", phenotype1[3], phenotype2[3], 0));
                    //resultList.add(String.format("%s\t%s\t%d", phenotype1[0], phenotype2[1], 0));
                    //bw.write(String.format("%s\t%s\t%d", phenotype1[0], phenotype2[0], 0) + "\n");
                    outputBuffer.append(String.format("%s\t%s\t%d", phenotype1[0], phenotype2[0], 0))
                            .append("\n");
                }
                bw.append(outputBuffer.toString());
                outputBuffer.setLength(0);
            }
        }
        bw.flush();
        System.out.println("The count is: " + count);
    } catch (IOException io) {
        try {
            if (bw != null)
                bw.close();
            io.printStackTrace();
        } catch (IOException e) {
            System.out.println("Problem occured while closing output stream  " + bw);
            e.printStackTrace();
        }
    } catch (Exception e) {
        e.printStackTrace();
    } finally {
        try {
            if (bw != null)
                bw.close();
        } catch (IOException e) {
            System.out.println("Problem occured while closing output stream  " + bw);
            e.printStackTrace();
        }
    }
}

---

From source file:es.uvigo.ei.sing.adops.operations.running.tcoffee.TCoffeeDefaultProcessManager.java

private void replaceOWithGaps(File inputFile) throws OperationException {
    if (this.getLogger() != null)
        this.getLogger().info("Command: Replacing o with gaps in: " + inputFile.getAbsolutePath());
    try {/*  w ww .  j  av  a2  s  .  co m*/
        FileUtils.writeLines(inputFile,
                Utils.replaceNames(Collections.singletonMap("o", "-"), FileUtils.readLines(inputFile)));
    } catch (IOException ioe) {
        throw new OperationException(ioe);
    }
}

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From source file:dk.nsi.haiba.lprimporter.integrationtest.RulesEngineIT.java

@Test
public void CheckErrorMessagesAreLoggedCorrectly() {
    op1 = null;// w  ww  .j  a va2  s  .c o  m

    List<Administration> contacts = setupContacts();
    rulesEngine.processRuleChain(contacts, Statistics.getInstance());

    assertEquals("Expected 1 row", 1, jdbc.queryForInt("select count(*) from RegelFejlbeskeder"));
    assertEquals(recordNummer,
            jdbc.queryForObject("select LPR_recordnummer from RegelFejlbeskeder", String.class));
    assertEquals(dbId, jdbc.queryForInt("select LPR_dbId from RegelFejlbeskeder"));

    File file = FileUtils.getFile("forretningsregel-fejl.log");
    assertNotNull(file);

    try {
        List<String> lines = FileUtils.readLines(file);
        assertEquals(1, lines.size());
        assertTrue(lines.get(0).contains("Proceduredato findes ikke"));
    } catch (IOException e) {
        fail("Lines are expected");
    }
}

---

From source file:edu.ku.brc.specify.tools.schemalocale.LocalizerApp.java

/**
 * //from   w  w  w.  ja  va2 s .  c  o  m
 */
public void processProperties() {
    initLucene();

    try {
        Locale currLocale = Locale.getDefault();

        Vector<String> terms = new Vector<String>();

        File resFile = new File("src/resources_" + currLocale.getLanguage() + ".properties");
        List<?> lines = FileUtils.readLines(resFile);
        for (String line : (List<String>) lines) {
            if (!line.startsWith("#")) {
                int inx = line.indexOf("=");
                if (inx > -1) {
                    String[] toks = StringUtils.split(line, "=");
                    if (toks.length > 1) {
                        terms.add(toks[0]);
                    }
                }
            }
        }

        Vector<Pair<String, String>> notFoundList = new Vector<Pair<String, String>>();
        String field = "contents";
        QueryParser parser = new QueryParser(Version.LUCENE_CURRENT, field, analyzer);

        for (String term : terms) {
            Query query;
            try {
                if (term.equals("AND") || term.equals("OR"))
                    continue;

                query = parser.parse(term);

                String subTerm = null;
                int hits = getTotalHits(query, 10);
                if (hits == 0) {
                    int inx = term.indexOf('.');
                    if (inx > -1) {
                        subTerm = term.substring(inx + 1);
                        hits = getTotalHits(parser.parse(subTerm), 10);

                        if (hits == 0) {
                            int lastInx = term.lastIndexOf('.');
                            if (lastInx > -1 && lastInx != inx) {
                                subTerm = term.substring(lastInx + 1);
                                hits = getTotalHits(parser.parse(subTerm), 10);
                            }
                        }
                    }
                }

                if (hits == 0) {
                    notFoundList.add(new Pair<String, String>(term, subTerm));

                    System.out.println("'" + term + "' was not found "
                            + (subTerm != null ? ("SubTerm[" + subTerm + "]") : ""));
                }

            } catch (ParseException e) {
                e.printStackTrace();
            }
        }

        ConversionLogger convLogger = new ConversionLogger();
        convLogger.initialize("resources", "Resources");

        TableWriter tblWriter = convLogger.getWriter("resources.html", "Resources");
        tblWriter.startTable();
        tblWriter.logHdr("Id", "Full Key", "Sub Key");
        int cnt = 1;
        for (Pair<String, String> pair : notFoundList) {
            tblWriter.log(Integer.toString(cnt++), pair.first, pair.second != null ? pair.second : "&nbsp;");
        }
        tblWriter.endTable();
        convLogger.closeAll();

    } catch (IOException ex) {
        edu.ku.brc.af.core.UsageTracker.incrHandledUsageCount();
        edu.ku.brc.exceptions.ExceptionTracker.getInstance().capture(LocalizerApp.class, ex);
        ex.printStackTrace();
    }
}

---

From source file:com.gargoylesoftware.htmlunit.BrowserVersionFeaturesTest.java

private void unusedCheck(final File dir, final List<String> unusedFeatures) throws IOException {
    for (final File file : dir.listFiles()) {
        if (file.isDirectory() && !".svn".equals(file.getName())) {
            unusedCheck(file, unusedFeatures);
        } else if (file.getName().endsWith(".java")) {
            final List<String> lines = FileUtils.readLines(file);
            final String browserVersionFeatures = BrowserVersionFeatures.class.getSimpleName();
            for (final String line : lines) {
                for (final Iterator<String> it = unusedFeatures.iterator(); it.hasNext();) {
                    if (line.contains(browserVersionFeatures + '.' + it.next())) {
                        it.remove();/*from  w  w w  . j  ava2s .  com*/
                    }
                }
            }
        }
    }
}

---

From source file:dk.nsi.haiba.lprimporter.testdata.SQLStatementsFromCPR83174CSV.java

private void generateDiagnosesData() throws IOException {
    File file = FileUtils.toFile(getClass().getClassLoader().getResource("data/cpr83174DIAG.csv"));
    boolean first = true;
    List<String> lines = FileUtils.readLines(file);
    for (String line : lines) {
        if (first) {
            // first row is column metadata
            first = false;// w w w  .  ja  v a  2  s.c om
            continue;
        }
        // V_RECNUM;C_DIAG;C_TILDIAG

        String[] splits = line.split(";");
        String recnum = splits[0];
        String code = splits[1];
        String tillaeg = splits[2];
        String type = "A";

        StringBuffer sql = new StringBuffer();
        sql.append("INSERT INTO T_DIAG (V_RECNUM, C_DIAG, C_TILDIAG, C_DIAGTYPE) VALUES (");
        sql.append(recnum);
        sql.append(", '");
        sql.append(code);
        sql.append("', '");
        sql.append(tillaeg);
        sql.append("', '");
        sql.append(type);
        sql.append("');");

        System.out.println(sql.toString());
    }
}

---

From source file:com.denimgroup.threadfix.importer.cli.CommandLineMigration.java

private static void convert(String inputScript, String outputScript) {
    File file = new File(inputScript);

    LOGGER.info("Converting threadfix script to mySql script " + outputScript + " ...");

    File outputFile = new File(outputScript);

    FileOutputStream fos = null;//w  w  w . j a  va  2 s  . c om
    try {
        fos = new FileOutputStream(outputFile);

        OutputStreamWriter osw = new OutputStreamWriter(fos);

        List<String> lines = FileUtils.readLines(file);

        osw.write("SET FOREIGN_KEY_CHECKS=0;\n");

        String table;
        for (String line : lines) {
            if (line != null && line.toUpperCase().startsWith("CREATE MEMORY TABLE ")) {
                table = RegexUtils.getRegexResult(line, TABLE_PATTERN);
                System.out.println("Create new table:" + table);
                String[] tableName = table.split("\\(", 2);
                if (tableName.length == 2) {
                    List<String> fieldList = list();
                    String[] fields = tableName[1].trim().replace("(", "").replace(")", "").split(",");
                    for (int i = 0; i < fields.length; i++) {
                        if (!"CONSTRAINT".equalsIgnoreCase(fields[i].trim().split(" ")[0])) {
                            String field = fields[i].trim().split(" ")[0].replace("\"", "");
                            if (!fieldList.contains(field))
                                fieldList.add(field);
                        }
                    }
                    String fieldsStr = org.apache.commons.lang3.StringUtils.join(fieldList, ",");
                    tableMap.put(tableName[0].toUpperCase(), "(" + fieldsStr + ")");
                }
            } else if (line != null && line.toUpperCase().startsWith("INSERT INTO ")) {
                table = RegexUtils.getRegexResult(line, INSERT_PATTERN).toUpperCase();
                if (tableMap.get(table) != null) {
                    line = line.replaceFirst(" " + table + " ", " " + table + tableMap.get(table) + " ");
                    if (line.contains(ACUNETIX_ESCAPE)) {
                        line = line.replace(ACUNETIX_ESCAPE, ACUNETIX_ESCAPE_REPLACE);
                    }
                    line = escapeString(line) + ";\n";

                    osw.write(line);
                }
            }
        }
        osw.write("SET FOREIGN_KEY_CHECKS=1;\n");
        osw.close();
    } catch (Exception e) {
        e.printStackTrace();
    }
}

---

From source file:it.drwolf.ridire.session.async.Mapper.java

@SuppressWarnings("unchecked")
public static Integer countWordsFromPoSTagResource(String posTagResourceFileName) throws IOException {
    List<String> lines = FileUtils.readLines(new File(posTagResourceFileName));
    Integer count = 0;//ww  w.  j  a  v  a  2  s  . c o  m
    StrTokenizer tokenizer = StrTokenizer.getTSVInstance();
    for (String l : lines) {
        tokenizer.reset(l);
        String[] tokens = tokenizer.getTokenArray();
        if (tokens.length == 3) {
            if (Mapper.isValidPos(tokens[1].trim())) {
                ++count;
            }
        }
    }
    return count;
}

---

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