Example usage for org.apache.commons.io FileUtils readLines

List of usage examples for org.apache.commons.io FileUtils readLines

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Introduction

In this page you can find the example usage for org.apache.commons.io FileUtils readLines.

Prototype

public static List readLines(File file) throws IOException

Source Link

Document

Reads the contents of a file line by line to a List of Strings using the default encoding for the VM.

Usage

From source file:edu.isi.wings.portal.servlets.HandleUpload.java

/**
 * Handle an HTTP POST request from Plupload.
 *//*from   ww w.ja v  a 2  s  .c o  m*/
protected void doPost(HttpServletRequest request, HttpServletResponse response)
        throws ServletException, IOException {
    PrintWriter out = response.getWriter();
    Config config = new Config(request);
    if (!config.checkDomain(request, response))
        return;

    Domain dom = config.getDomain();

    String name = null;
    String id = null;
    String storageDir = dom.getDomainDirectory() + "/";
    int chunk = 0;
    int chunks = 0;
    boolean isComponent = false;

    boolean isMultipart = ServletFileUpload.isMultipartContent(request);
    if (isMultipart) {
        ServletFileUpload upload = new ServletFileUpload();
        FileItemIterator iter;
        try {
            iter = upload.getItemIterator(request);
            while (iter.hasNext()) {
                FileItemStream item = iter.next();
                try {
                    InputStream input = item.openStream();
                    if (item.isFormField()) {
                        String fieldName = item.getFieldName();
                        String value = Streams.asString(input);
                        if ("name".equals(fieldName))
                            name = value.replaceAll("[^\\w\\.\\-_]+", "_");
                        else if ("id".equals(fieldName))
                            id = value;
                        else if ("type".equals(fieldName)) {
                            if ("data".equals(value))
                                storageDir += dom.getDataLibrary().getStorageDirectory();
                            else if ("component".equals(value)) {
                                storageDir += dom.getConcreteComponentLibrary().getStorageDirectory();
                                isComponent = true;
                            } else {
                                storageDir = System.getProperty("java.io.tmpdir");
                            }
                        } else if ("chunk".equals(fieldName))
                            chunk = Integer.parseInt(value);
                        else if ("chunks".equals(fieldName))
                            chunks = Integer.parseInt(value);
                    } else if (name != null) {
                        File storageDirFile = new File(storageDir);
                        if (!storageDirFile.exists())
                            storageDirFile.mkdirs();
                        File uploadFile = new File(storageDirFile.getPath() + "/" + name + ".part");
                        saveUploadFile(input, uploadFile, chunk);
                    }
                } catch (Exception e) {
                    this.printError(out, e.getMessage());
                    e.printStackTrace();
                }
            }
        } catch (FileUploadException e1) {
            this.printError(out, e1.getMessage());
            e1.printStackTrace();
        }
    } else {
        this.printError(out, "Not multipart data");
    }

    if (chunks == 0 || chunk == chunks - 1) {
        // Done upload
        File partUpload = new File(storageDir + File.separator + name + ".part");
        File finalUpload = new File(storageDir + File.separator + name);
        partUpload.renameTo(finalUpload);

        String mime = new Tika().detect(finalUpload);
        if (mime.equals("application/x-sh") || mime.startsWith("text/"))
            FileUtils.writeLines(finalUpload, FileUtils.readLines(finalUpload));

        // Check if this is a zip file and unzip if needed
        String location = finalUpload.getAbsolutePath();
        if (isComponent && mime.equals("application/zip")) {
            String dirname = new URI(id).getFragment();
            location = StorageHandler.unzipFile(finalUpload, dirname, storageDir);
            finalUpload.delete();
        }
        this.printOk(out, location);
    }
}

From source file:gov.nih.nci.firebird.selenium2.pages.sponsor.representative.export.AbstractExportCurationDataTabHelper.java

List<String> getCsvFileContents() throws IOException {
    File csvFile = getTab().clickExportCsv();
    return FileUtils.readLines(csvFile);
}

From source file:com.dubic.dc.dev.assist.services.ModuleService.java

public String processFile(String moduleName, boolean tfw, ModFile mfile) throws IOException {
    if (ModFile.MANUAL.equals(mfile.getAction())) {
        return "Edit manually";
    } else if (ModFile.DELETE.equals(mfile.getAction())) {
        FileUtils.deleteQuietly(new File(mfile.getPath()));
        System.out.println("delete file : " + new File(mfile.getName()));
        return "deleted";
    }/* w  w  w.  j  a va 2 s  .  co m*/

    File f = new File(mfile.getPath());
    Map<String, Object> p = new HashMap<>();
    p.put(serviceKey, moduleName);
    p.put("tfw", tfw);
    String contents = resolveTemplate(p, mfile.getTemplate());

    if (ModFile.REPLACE.equals(mfile.getAction())) {
        FileUtils.write(f, contents);
        System.out.println("Replaced file : " + f.getName());
        return "replaced";
    } else if (ModFile.APPEND.equals(mfile.getAction())) {
        //check if line exists
        if (FileUtils.readFileToString(f).contains(mfile.getChecktext())) {
            System.out.println("EXISTS IN FILE!!! : " + f.getName());
            return "exists";
        }

        List<String> lines = FileUtils.readLines(f);
        boolean started = false;

        int i = 0;
        for (String line : lines) {
            //
            if (mfile.getStartline() != null) {//start line is set
                //                    System.out.println("mfile.getStartline() != null");
                if (line.contains(mfile.getStartline())) {//start line is hit
                    //                        System.out.println("line.equals(mfile.getStartline()");
                    started = true;
                }
                if (started && line.contains(mfile.getEndline())) {//end line hit
                    System.out.println("started && line.equals(mfile.getEndline())");
                    lines.add(i, contents);
                    break;
                }
            } else {//No start line so use end line
                if (mfile.getEndline() == null) {
                    lines.add(contents);
                    break;
                } else if (line.contains(mfile.getEndline())) {//end line hit
                    lines.add(i, contents);
                    break;
                }
            }
            i++;
        }

        //            for (String line : lines) {
        //                System.out.println(line);
        //            }
        FileUtils.writeLines(f, lines);
        System.out.println("Appended to file : " + f.getName());
        return "appended";

    } else if (ModFile.PREPEND.equals(mfile.getAction())) {
        if (FileUtils.readFileToString(f).contains(mfile.getChecktext())) {
            System.out.println("EXISTS IN FILE!!! : " + f.getName());
            return "exists";
        }

        List<String> originalLines = FileUtils.readLines(f);
        originalLines.add(0, contents);
        FileUtils.writeLines(f, originalLines);
        System.out.println("Prepended to file : " + f.getName());
        return "prepended";
    } else if (ModFile.REMOVE.equals(mfile.getAction())) {
        List<String> lines = FileUtils.readLines(f);
        int i = 0;
        for (String line : lines) {
            if (line.contains(contents)) {
                //                    exists?
                if (line.startsWith("//")) {
                    return "exists";
                }
                lines.remove(i);
                lines.add(i, "//".concat(line));
                break;
            }
            i++;
        }
        FileUtils.writeLines(f, lines);
        System.out.println("Commented out from : " + f.getName());
        return "commented";
    } else if (ModFile.CREATE.equals(mfile.getAction())) {
        FileUtils.write(f, contents, "UTF-8");
        System.out.println("Created file : " + f.getName());
        return "created";
    } else {
        System.out.println("No Action");
        return "no action";
    }
}

From source file:form.mydemik.com.DBSetting.java

private void btnSimpanActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_btnSimpanActionPerformed
    File file = new File("D:/file.txt");
    if (file.exists()) {

        try {// ww w.ja  v a2s  .  c  o m
            List<String> lines = FileUtils.readLines(file);
            lines.add(1, "Line to add");
            FileUtils.writeLines(file, lines);

        } catch (FileNotFoundException ex) {
            Logger.getLogger(DBSetting.class.getName()).log(Level.SEVERE, null, ex);
        } catch (IOException ex) {
            Logger.getLogger(DBSetting.class.getName()).log(Level.SEVERE, null, ex);
        }
    } else {
        try {
            file.createNewFile();
        } catch (IOException ex) {
            Logger.getLogger(DBSetting.class.getName()).log(Level.SEVERE, null, ex);
        }
        DBSetting db = new DBSetting();
        db.setVisible(true);
    }

}

From source file:com.gargoylesoftware.htmlunit.javascript.host.PropertiesTest.java

private static List<String> getProperties(final BrowserVersion browserVersion) throws Exception {
    final URL url = PropertiesTest.class.getClassLoader()
            .getResource("objects/properties." + browserVersion.getNickname() + ".txt");
    return FileUtils.readLines(new File(url.toURI()));
}

From source file:aes.pica.touresbalon.tb_serviciosbolivariano.ServiciosBolivarianos.java

@Override
public List<TouresBalonOrdenVO> consultaReservas(String ordenId) {
    List<TouresBalonOrdenVO> listaReservasTB = new ArrayList<>();
    String nombreArchivo = Constantes.NAME_RESERVAS + ordenId + Constantes.CSV_FILE;
    try {/*from w  w  w.  j  ava 2s  . co m*/
        File archivoConsulta = FileUtils.getFile(rutaReservas, nombreArchivo);
        if (archivoConsulta != null && archivoConsulta.exists()) {
            List<String> lineasArchivo = FileUtils.readLines(archivoConsulta);
            System.out.println("Archivo encontrado: " + archivoConsulta.getAbsoluteFile());
            for (String s : lineasArchivo) {
                listaReservasTB.add(new TouresBalonOrdenVO(s));
            }
        } else {
            System.out.println("No existe archivo: " + nombreArchivo + " en el directorio: " + rutaReservas);
        }
    } catch (IOException ex) {
        System.err.println(ex.toString());
    }
    return listaReservasTB;
}

From source file:io.github.bunnyblue.droidfix.classcomputer.proguard.MappingMapper.java

public ArrayList<ClassObject> readCacheClasses() {
    ArrayList<ClassObject> cacheClasses = new ArrayList<ClassObject>();
    File cache = new File(Configure.getInstance().getPatchClassMD5());
    try {//from  w  ww .  j a v  a  2  s . co  m
        List<String> caches = FileUtils.readLines(cache);
        for (String string : caches) {
            String[] maps = string.split(" ");
            ClassObject classObject = new ClassObject(maps[1], maps[0]);
            cacheClasses.add(classObject);
        }
    } catch (IOException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    }
    return cacheClasses;
}

From source file:ml.shifu.shifu.core.pmml.PMMLVerifySuit.java

private boolean compareScore(File test, File control, String scoreName, String sep, Double errorRange)
        throws Exception {
    List<String> testData = FileUtils.readLines(test);
    List<String> controlData = FileUtils.readLines(control);
    String[] testSchema = testData.get(0).trim().split(sep);
    String[] controlSchema = controlData.get(0).trim().split(sep);

    for (int row = 1; row < controlData.size(); row++) {
        Map<String, Object> ctx = new HashMap<String, Object>();
        Map<String, Object> controlCtx = new HashMap<String, Object>();

        String[] testRowValue = testData.get(row).split(sep, testSchema.length);
        for (int index = 0; index < testSchema.length; index++) {
            ctx.put(testSchema[index], testRowValue[index]);
        }/*from w  w w .j a v a2  s.c o  m*/
        String[] controlRowValue = controlData.get(row).split(sep, controlSchema.length);

        for (int index = 0; index < controlSchema.length; index++) {
            controlCtx.put(controlSchema[index], controlRowValue[index]);
        }

        for (String realScoreName : controlSchema) {
            Double controlScore = Double.valueOf((String) controlCtx.get(realScoreName));
            Double testScore = Double.valueOf((String) ctx.get(realScoreName));
            if (Math.abs(controlScore - testScore) > errorRange) {
                System.out.println(
                        "Row " + row + " - The score doens't match " + controlScore + " vs " + testScore + ".");
                return false;
            }
        }
    }

    return true;
}

From source file:com.przyjaznyplan.utils.CsvConverter.java

private void ifTextGetIt(String value, ContentValues sqlValues) {
    if (value != null && value.endsWith(TXT_EXT)) {
        Collection files = FileUtils.listFiles(new File(rootFolder), new NameFileFilter(value),
                TrueFileFilter.INSTANCE);
        Iterator<File> iterator = files.iterator();
        if (iterator.hasNext()) {
            File f = iterator.next();
            List<String> linesOfText = null;
            try {
                linesOfText = FileUtils.readLines(f);
            } catch (IOException e) {
                Log.e("File IO", e.getMessage());
            }/*from ww  w  . j a  v a2 s.  c  om*/
            StringBuilder builder = new StringBuilder();

            if (linesOfText != null) {
                for (String line : linesOfText) {
                    builder.append(line);
                }
            }

            sqlValues.put(Czynnosc.TEXT, builder.toString());
        }

    } else if (value != null && value.length() > 0) {
        sqlValues.put(Czynnosc.TEXT, value);
    }
}

From source file:es.uvigo.ei.sing.adops.operations.running.tcoffee.TCoffeeDefaultProcessManager.java

protected static int maxSequenceLength(File fastaFile) throws OperationException {
    String flatSequence = "";
    int maxLength = 0;
    try {//from   ww  w . j a  v a  2s  .  c  o  m
        for (String seq : FileUtils.readLines(fastaFile)) {
            if (seq.startsWith(">")) {
                maxLength = max(maxLength, flatSequence.length());

                flatSequence = "";
            } else {
                flatSequence += seq;
            }
        }
    } catch (IOException e) {
        throw new OperationException(null, "Error reading intermediate fasta file", e);
    }

    maxLength = max(maxLength, flatSequence.length());

    return maxLength;
}