Example usage for org.apache.commons.lang ArrayUtils addAll

List of usage examples for org.apache.commons.lang ArrayUtils addAll

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Introduction

In this page you can find the example usage for org.apache.commons.lang ArrayUtils addAll.

Prototype

public static double[] addAll(double[] array1, double[] array2)

Source Link

Document

Adds all the elements of the given arrays into a new array.

Usage

From source file:com.oneops.inductor.WorkOrderExecutor.java

/**
 * Calls local or remote chef to do recipe [ciClassname::wo.getRfcCi().rfcAction]
 *
 * @param wo CmsWorkOrderSimple/*w w w .j a v a 2s .  c om*/
 */
private void runWorkOrder(CmsWorkOrderSimple wo) {

    // check to see if should be remote by looking at proxy
    Boolean isRemote = isRemoteChefCall(wo);

    // file-based request keyed by deployment record id - remotely by
    // class.ciName for ease of debug
    String remoteFileName = getRemoteFileName(wo);
    String fileName = config.getDataDir() + "/" + wo.getDpmtRecordId() + ".json";
    logger.info("writing config to: " + fileName + " remote: " + remoteFileName);
    // assume failed; gets set to COMPLETE at the end
    wo.setDpmtRecordState(FAILED);
    String appName = normalizeClassName(wo);
    String logKey = getLogKey(wo);
    logger.info(logKey + " Inductor: " + config.getIpAddr());
    wo.putSearchTag("inductor", config.getIpAddr());

    writeChefRequest(wo, fileName);

    String cookbookPath = getCookbookPath(wo.getRfcCi().getCiClassName());
    logger.info("cookbookPath: " + cookbookPath);

    Set<String> serviceCookbookPaths = null;

    // sync cookbook and chef json request to remote site
    String host = null;
    String user = "oneops";

    String keyFile = null;
    String port = "22";

    if (isRemote) {

        host = getWorkOrderHost(wo, logKey);

        try {
            keyFile = writePrivateKey(wo);
        } catch (KeyNotFoundException e) {
            logger.error(e.getMessage());
            return;
        }
        if (host.contains(":")) {
            String[] parts = host.split(":");
            host = parts[0];
            port = parts[1];
            logger.info("using port from " + config.getIpAttribute());
        }

        long rsyncStartTime = System.currentTimeMillis();
        String[] rsyncCmdLineWithKey = rsyncCmdLine.clone();
        rsyncCmdLineWithKey[4] += "-p " + port + " -qi " + keyFile;

        // return with failure if empty
        if (host == null || host.isEmpty()) {
            wo.setComments("failed : missing host/ip cannot connect");
            removeFile(wo, keyFile);
            return;
        }

        String rfcAction = wo.getRfcCi().getRfcAction();

        logger.info("rfc: " + wo.getRfcCi().getRfcId() + ", appName: " + appName + ", rfcAction: " + rfcAction);

        // v2 install base done via compute cookbook
        // compute::remote logic can be removed once v1 packs are decommed
        //skip base install for propagation updates
        if (appName.equalsIgnoreCase(COMPUTE) && rfcAction.equalsIgnoreCase(REMOTE)
                && !isPropagationUpdate(wo)) {

            logger.info(logKey + " ### BASE INSTALL");
            wo.setComments("");
            runBaseInstall(processRunner, wo, host, port, logKey, keyFile);
            if (!wo.getComments().isEmpty()) {
                logger.info(logKey + " failed base install.");
                return;
            }
        }
        String baseDir = config.getCircuitDir().replace("packer", cookbookPath);
        String components = baseDir + "/components";
        String destination = "/home/" + user + "/" + cookbookPath;

        // always sync base cookbooks/modules
        String[] cmdLine = (String[]) ArrayUtils.addAll(rsyncCmdLineWithKey,
                new String[] { components, user + "@" + host + ":" + destination });
        logger.info(logKey + " ### SYNC BASE: " + components);

        if (!host.equals(TEST_HOST)) {
            ProcessResult result = processRunner
                    .executeProcessRetry(new ExecutionContext(wo, cmdLine, logKey, retryCount));
            if (result.getResultCode() > 0) {
                if (DELETE.equals(wo.getRfcCi().getRfcAction())) {
                    List<CmsRfcCISimple> managedViaRfcs = wo.getPayLoad().get(MANAGED_VIA);
                    if (managedViaRfcs != null && managedViaRfcs.size() > 0
                            && DELETE.equals(managedViaRfcs.get(0).getRfcAction())) {
                        if (failOnDeleteFailure(wo)) {
                            logger.info(logKey
                                    + "wo failed due to unreachable compute, this component is set to fail on delete failures");
                        } else {
                            logger.warn(logKey
                                    + "wo failed due to unreachable compute, but marking ok due to ManagedVia rfcAction==delete");
                            wo.setDpmtRecordState(COMPLETE);
                        }
                    } else {
                        wo.setComments("FATAL: "
                                + generateRsyncErrorMessage(result.getResultCode(), host + ":" + port));
                    }
                } else {
                    wo.setComments(
                            "FATAL: " + generateRsyncErrorMessage(result.getResultCode(), host + ":" + port));
                }

                handleRsyncFailure(wo, keyFile);
                return;
            }
        }

        // rsync exec-order shared
        String sharedComponents = config.getCircuitDir().replace("packer", "shared/");
        destination = "/home/" + user + "/shared/";
        cmdLine = (String[]) ArrayUtils.addAll(rsyncCmdLineWithKey,
                new String[] { sharedComponents, user + "@" + host + ":" + destination });
        logger.info(logKey + " ### SYNC SHARED: " + sharedComponents);

        if (!host.equals(TEST_HOST)) {
            ProcessResult result = processRunner
                    .executeProcessRetry(new ExecutionContext(wo, cmdLine, logKey, retryCount));
            if (result.getResultCode() > 0) {
                inductorStat.addRsyncFailed();
                wo.setComments(
                        "FATAL: " + generateRsyncErrorMessage(result.getResultCode(), host + ":" + port));
                handleRsyncFailure(wo, keyFile);
                return;
            }
        }

        serviceCookbookPaths = syncServiceCookbooks(wo, cookbookPath, user, rsyncCmdLineWithKey, host, port,
                logKey, keyFile);

        // put workorder
        cmdLine = (String[]) ArrayUtils.addAll(rsyncCmdLineWithKey,
                new String[] { fileName, user + "@" + host + ":" + remoteFileName });
        logger.info(logKey + " ### SYNC: " + remoteFileName);
        if (!host.equals(TEST_HOST)) {
            ProcessResult result = processRunner
                    .executeProcessRetry(new ExecutionContext(wo, cmdLine, logKey, retryCount));
            if (result.getResultCode() > 0) {
                wo.setComments(
                        "FATAL: " + generateRsyncErrorMessage(result.getResultCode(), host + ":" + port));
                handleRsyncFailure(wo, keyFile);
                return;
            }
        }
        wo.putSearchTag(CmsConstants.INDUCTOR_RSYNC_TIME,
                Long.toString(System.currentTimeMillis() - rsyncStartTime));
    }

    // run the chef command
    String[] cmd = null;
    if (isRemote) {
        String vars = getProxyEnvVars(wo);
        // exec-order.rb takes -d switch and 3 args: impl, json node
        // structure w/ work/actionorder, and cookbook path
        String debugFlag = "";
        if (isDebugEnabled(wo)) {
            debugFlag = "-d";
        }

        String additionalCookbookPaths = "";
        if (serviceCookbookPaths != null && serviceCookbookPaths.size() > 0) {
            additionalCookbookPaths = String.join(",", serviceCookbookPaths);
        }

        String remoteCmd = "sudo " + vars + " shared/exec-order.rb " + wo.getRfcCi().getImpl() + " "
                + remoteFileName + " " + cookbookPath + " " + additionalCookbookPaths + " " + debugFlag;

        cmd = (String[]) ArrayUtils.addAll(sshCmdLine,
                new String[] { keyFile, "-p " + port, user + "@" + host, remoteCmd });
        logger.info(logKey + " ### EXEC: " + user + "@" + host + " " + remoteCmd);
        int woRetryCount = getRetryCountForWorkOrder(wo);
        if (!host.equals(TEST_HOST)) {
            ProcessResult result = processRunner
                    .executeProcessRetry(new ExecutionContext(wo, cmd, logKey, woRetryCount));

            // set the result status
            if (result.getResultCode() != 0) {
                inductorStat.addWoFailed();
                // mark as complete when rfc and managed_via is DELETE
                if (DELETE.equals(wo.getRfcCi().getRfcAction())) {
                    List<CmsRfcCISimple> managedViaRfcs = wo.getPayLoad().get(MANAGED_VIA);
                    if (managedViaRfcs != null && managedViaRfcs.size() > 0
                            && DELETE.equals(managedViaRfcs.get(0).getRfcAction())) {
                        if (failOnDeleteFailure(wo)) {
                            logger.info(logKey + "wo failed, this component is set to fail on delete failures");
                        } else {
                            logger.warn(
                                    logKey + "wo failed, but marking ok due to ManagedVia rfcAction==delete");
                            wo.setDpmtRecordState(COMPLETE);
                        }
                    }
                } else {
                    String comments = getCommentsFromResult(result);
                    logger.error(logKey + comments);
                    wo.setComments(comments);
                }

                removeRemoteWorkOrder(wo, keyFile, processRunner);
                removeFile(wo, keyFile);
                copySearchTagsFromResult(wo, result);
                return;
            }
            // remove remote workorder for success and failure.
            removeRemoteWorkOrder(wo, keyFile, processRunner);
            setResultCi(result, wo);
        }

        wo.setDpmtRecordState(COMPLETE);
        removeFile(wo, keyFile);

    } else {
        runLocalWorkOrder(processRunner, wo, appName, logKey, fileName, cookbookPath);
    }
    if (!isDebugEnabled(wo))
        removeFile(fileName);
}

From source file:marytts.unitselection.analysis.Phone.java

/**
 * Get the F0 factor for each Datagram in this phone's left and right units
 * //from  w w  w.ja v  a  2 s.com
 * @return the F0 factors, in an array with one value per Datagram
 */
public double[] getF0Factors() {
    return ArrayUtils.addAll(getLeftF0Factors(), getRightF0Factors());
}

From source file:canreg.client.gui.components.FastFilterInternalFrame.java

private void refreshVariableList() {
    if (tableName.equalsIgnoreCase(Globals.TUMOUR_AND_PATIENT_JOIN_TABLE_NAME)) {
        variablesInTable = (DatabaseVariablesListElement[]) ArrayUtils.addAll(patientVariablesInDB,
                tumourVariablesInDB);//w ww  .  ja va  2  s  . c  om
    } else if (tableName.equalsIgnoreCase(Globals.SOURCE_AND_TUMOUR_JOIN_TABLE_NAME)) {
        variablesInTable = (DatabaseVariablesListElement[]) ArrayUtils.addAll(sourceVariablesInDB,
                tumourVariablesInDB);
    } else if (tableName.equalsIgnoreCase(Globals.SOURCE_AND_TUMOUR_AND_PATIENT_JOIN_TABLE_NAME)) {
        variablesInTable = (DatabaseVariablesListElement[]) ArrayUtils.addAll(sourceVariablesInDB,
                tumourVariablesInDB);
        variablesInTable = (DatabaseVariablesListElement[]) ArrayUtils.addAll(variablesInTable,
                patientVariablesInDB);
    } else if (tableName.equalsIgnoreCase(Globals.PATIENT_TABLE_NAME)) {
        variablesInTable = patientVariablesInDB;
    } else if (tableName.equalsIgnoreCase(Globals.TUMOUR_TABLE_NAME)) {
        variablesInTable = tumourVariablesInDB;
    } else if (tableName.equalsIgnoreCase(Globals.SOURCE_TABLE_NAME)) {
        variablesInTable = sourceVariablesInDB;
    }
    Arrays.sort(variablesInTable, comparator);
    variableComboBox.setModel(new DefaultComboBoxModel(variablesInTable));
    variableComboBox.setSelectedItem(0);
    updatePossibleValues();
}

From source file:de.tudarmstadt.ukp.dkpro.core.berkeleyparser.BerkeleyParserTest.java

private JCas runTest(String aLanguage, String aVariant, String aText, boolean aGoldPos, Object... aExtraParams)
        throws Exception {
    AggregateBuilder aggregate = new AggregateBuilder();

    if (aGoldPos) {
        aggregate.add(createEngineDescription(OpenNlpPosTagger.class));
    }//from  w w  w.j a v a  2 s.c o m

    Object[] params = new Object[] { BerkeleyParser.PARAM_VARIANT, aVariant, BerkeleyParser.PARAM_PRINT_TAGSET,
            true, BerkeleyParser.PARAM_WRITE_PENN_TREE, true, BerkeleyParser.PARAM_WRITE_POS, !aGoldPos,
            BerkeleyParser.PARAM_READ_POS, aGoldPos };
    params = ArrayUtils.addAll(params, aExtraParams);
    aggregate.add(createEngineDescription(BerkeleyParser.class, params));

    return TestRunner.runTest(aggregate.createAggregateDescription(), aLanguage, aText);
}

From source file:gda.scan.ScanDataPoint.java

/**
 * @return all Scannable positions as strings using the given format
 *//*from w w  w.  j a v a  2s.  c o  m*/
@Override
public String[] getPositionsAsFormattedStrings() {

    String[] strings = new String[0];
    if (getPositions() != null) {
        int index = 0;
        for (Object data : getPositions()) {
            PlottableDetectorData wrapper = new DetectorDataWrapper(data);
            Double[] dvals = wrapper.getDoubleVals();
            String[] formattedVals = new String[dvals.length];
            String[] formats = this.scannableFormats[index];
            for (int j = 0; j < dvals.length; j++) {
                formattedVals[j] = String.format(formats[j], dvals[j]);
            }
            strings = (String[]) ArrayUtils.addAll(strings, formattedVals);
            index++;
        }
    }
    if (strings.length != getPositionHeader().size()) {
        throw new IllegalArgumentException("Position data does not hold the expected number of fields");
    }
    return strings;
}

From source file:edu.harvard.iq.dvn.ingest.dsb.impl.DvnRJobRequest.java

public String[] getUpdatedVariableNames() {
    List<String> tmp = new ArrayList<String>();
    if ((!hasUnsafedVariableNames) && (!hasRecodedVariables())) {
        // neither renemaed nor recoded vars
        return getVariableNames();
    } else if (hasUnsafedVariableNames && !hasRecodedVariables()) {
        // renamed vars only
        return safeVarNames;
    } else if (!hasUnsafedVariableNames && hasRecodedVariables()) {
        // recoded vars only
        return (String[]) ArrayUtils.addAll(getVariableNames(), getRecodedVarNameSet());
    } else {//from w w w .  j a v a  2  s  . c  om
        // both renamed and rcoded vars
        return (String[]) ArrayUtils.addAll(safeVarNames, getRecodedVarNameSet());
    }

}

From source file:edu.harvard.iq.dvn.ingest.dsb.impl.DvnRJobRequest.java

public String[] getUpdatedVariableLabels() {
    if (hasRecodedVariables()) {
        return (String[]) ArrayUtils.addAll(getVariableLabels(), getRecodedVarLabelSet());
    } else {//  www  . j a v a2 s. co m
        return getVariableLabels();
    }
}

From source file:edu.harvard.iq.dvn.ingest.dsb.impl.DvnRJobRequest.java

public String[] getUpdatedVariableIds() {
    if (hasRecodedVariables()) {
        return (String[]) ArrayUtils.addAll(getVariableIds(), getRecodedVarIdSet());
    } else {/*from  w  ww .  j a va2 s. co  m*/
        return getVariableIds();
    }
}

From source file:edu.harvard.iq.dvn.ingest.dsb.impl.DvnRJobRequest.java

public int[] getUpdatedVariableTypes() {
    if (hasRecodedVariables()) {
        return ArrayUtils.addAll(getVariableTypes(), getRecodedVarTypeSet());
    } else {//from  w ww.jav  a  2s  .co  m
        return getVariableTypes();
    }
}

From source file:edu.harvard.iq.dvn.ingest.dsb.impl.DvnRJobRequest.java

public int[] getUpdatedVariableTypesWithBoolean() {
    if (hasRecodedVariables()) {
        return ArrayUtils.addAll(getVariableTypesWithBoolean(), getRecodedVarTypeSet());
    } else {// w  w  w . j a va 2s .  c  o  m
        return getVariableTypes();
    }
}