Example usage for org.apache.commons.lang SerializationUtils clone

Introduction

In this page you can find the example usage for org.apache.commons.lang SerializationUtils clone.

Prototype

public static Object clone(Serializable object)

Source Link

Document

Deep clone an Object using serialization.

This is many times slower than writing clone methods by hand on all objects in your object graph.

Usage

From source file:uk.ac.ebi.interpro.scan.model.ProteinMatchesHolderTest.java

@Test
public void testEquals() throws IOException, ParseException {
    // Original//w w  w. j a va  2s .c  o  m
    ProteinMatchesHolder original = getPfamObject();
    // Copy
    ProteinMatchesHolder copy = (ProteinMatchesHolder) SerializationUtils.clone(original);
    // Should be equal
    assertEquals("Original and copy should be equal", original, copy);
    // Print
    if (LOGGER.isDebugEnabled()) {
        LOGGER.debug(original);
        LOGGER.debug(super.marshal(original));
    }
}

From source file:uk.ac.ebi.interpro.scan.model.ProteinTest.java

/**
 * Tests the equivalent() method works as expected
 *//*w  ww. j a  va  2 s .c o m*/
@Test
@Ignore
public void testEquals() throws IOException {
    Protein original = new Protein(GOOD);
    Protein copy = (Protein) SerializationUtils.clone(original);
    // Original should equal itself
    assertEquals(original, original);
    // Original and copy should be equal
    assertEquals(original, copy);
    // Original and copy should not be equal
    ProteinXref ProteinXref = original.addCrossReference(new ProteinXref("A0A000_9ACTO"));
    assertFalse("Original and copy should not be equal", original.equals(copy));
    //  Original and copy should be equal again
    copy.addCrossReference((ProteinXref) SerializationUtils.clone(ProteinXref));
    assertEquals(original, copy);
    // Try with locations
    Set<Hmmer2Match.Hmmer2Location> locations = new HashSet<Hmmer2Match.Hmmer2Location>();
    locations.add(new Hmmer2Match.Hmmer2Location(3, 107, 3.0, 3.7e-9, 1, 104, HmmBounds.N_TERMINAL_COMPLETE));
    Match match = original
            .addMatch(new Hmmer2Match(new Signature("PF02310", "B12-binding"), 0.035, 3.7e-9, locations));
    assertFalse("Original and copy should not be equal", original.equals(copy));
    copy.addMatch((Hmmer2Match) SerializationUtils.clone(match));
    assertEquals(original, copy);
    // Print
    if (LOGGER.isDebugEnabled()) {
        LOGGER.debug(original);
        LOGGER.debug(super.marshal(original));
    }
}

From source file:uk.ac.ebi.interpro.scan.model.SignatureLibraryReleaseTest.java

@Test
public void testEquals() throws ParseException {
    // Original/*from ww w .j  av a2  s. c om*/
    SignatureLibraryRelease original = getGene3dObject();
    // Copy
    SignatureLibraryRelease copy = (SignatureLibraryRelease) SerializationUtils.clone(original);
    //TODO: Why is the signature library set to NULL?
    //copy.getSignatures().iterator().next().setSignatureLibraryRelease(null);
    // Should be equal
    assertEquals("Original and copy models should be equal",
            original.getSignatures().iterator().next().getModels(),
            copy.getSignatures().iterator().next().getModels());
    assertEquals("Original and copy signatures should be equal", original.getSignatures(),
            copy.getSignatures());
    assertEquals("Original and copy should be equal", original, copy);
}

From source file:ws.prager.camel.consul.ConsulRegistry.java

public void put(String key, Object object) {
    // Substitute $ character in key
    key = key.replaceAll("\\$", "/");
    // create session to avoid conflicts
    // (not sure if that is safe enough, again)
    SessionClient sessionClient = consul.sessionClient();
    String sessionName = "session_" + UUID.randomUUID().toString();
    SessionCreatedResponse response = sessionClient
            .createSession(ImmutableSession.builder().name(sessionName).build());
    String sessionId = response.getId();
    kvClient = consul.keyValueClient();/*  w ww . j  a  v  a  2  s  . co m*/
    String lockKey = "lock_" + key;
    kvClient.acquireLock(lockKey, sessionName, sessionId);

    // Allow only unique keys, last one wins
    if (lookupByName(key) != null) {
        remove(key);
    }
    Object clone = SerializationUtils.clone((Serializable) object);
    byte[] serializedObject = SerializationUtils.serialize((Serializable) clone);
    // pre-encode due native encoding issues
    byte[] preEncodedValue = Base64.encodeBase64(serializedObject);
    String value = new String(preEncodedValue);
    // store the actual class
    logger.debug("store value: " + value + " ,under key: " + key);
    kvClient.putValue(key, value);
    // store just as a bookmark
    logger.debug("store bookmark: " + 1 + " ,under key: " + object.getClass().getName().replaceAll("\\$", "/")
            + "/" + key);
    kvClient.putValue(object.getClass().getName().replaceAll("\\$", "/") + "/" + key, "1");
    kvClient.releaseLock(lockKey, sessionId);
}