Example usage for org.apache.commons.lang3 ArrayUtils toPrimitive

Introduction

In this page you can find the example usage for org.apache.commons.lang3 ArrayUtils toPrimitive.

Prototype

public static boolean[] toPrimitive(final Boolean[] array) 

Source Link

Document

Converts an array of object Booleans to primitives.

This method returns null for a null input array.

Usage

From source file:org.um.feri.ears.problems.moo.misc.Golinski.java

@Override
public void evaluateConstraints(MOSolutionBase<Double> solution) {
    double[] constraints = new double[numberOfConstraints];

    double[] dv = ArrayUtils.toPrimitive(solution.getVariables());

    double x1, x2, x3, x4, x5, x6, x7;

    x1 = dv[0];/*from w  ww . j a v  a 2s .com*/
    x2 = dv[1];
    x3 = dv[2];
    x4 = dv[3];
    x5 = dv[4];
    x6 = dv[5];
    x7 = dv[6];

    constraints[0] = -((1.0 / (x1 * x2 * x2 * x3)) - (1.0 / 27.0));
    constraints[1] = -((1.0 / (x1 * x2 * x2 * x3 * x3)) - (1.0 / 397.5));
    constraints[2] = -((x4 * x4 * x4) / (x2 * x3 * x3 * x6 * x6 * x6 * x6) - (1.0 / 1.93));
    constraints[3] = -((x5 * x5 * x5) / (x2 * x3 * x7 * x7 * x7 * x7) - (1.0 / 1.93));
    constraints[4] = -(x2 * x3 - 40.0);
    constraints[5] = -((x1 / x2) - 12.0);
    constraints[6] = -(5.0 - (x1 / x2));
    constraints[7] = -(1.9 - x4 + 1.5 * x6);
    constraints[8] = -(1.9 - x5 + 1.1 * x7);

    double aux = 745.0 * x4 / (x2 * x3);
    double f2 = java.lang.Math.sqrt((aux * aux) + 1.69e7) / (0.1 * x6 * x6 * x6);
    constraints[9] = -(f2 - 1300);
    double a = 745.0 * x5 / (x2 * x3);
    double b = 1.575e8;
    constraints[10] = -(java.lang.Math.sqrt(a * a + b) / (0.1 * x7 * x7 * x7) - 1100.0);

    solution.setConstraints(constraints);

    double total = 0.0;
    int number = 0;
    for (int i = 0; i < constraints.length; i++) {
        if (constraints[i] < 0.0) {
            total += constraints[i];
            number++;
        }
    }
    solution.setOverallConstraintViolation(total);
    solution.setNumberOfViolatedConstraint(number);

}

---

From source file:org.um.feri.ears.problems.moo.misc.Ozyczka2.java

@Override
public void evaluateConstraints(MOSolutionBase<Double> solution) {
    double[] constraints = new double[numberOfConstraints];

    double[] dv = ArrayUtils.toPrimitive(solution.getVariables());

    double x1, x2, x3, x4, x5, x6;
    x1 = dv[0];//from w ww. j  a v  a 2 s.  c o  m
    x2 = dv[1];
    x3 = dv[2];
    x4 = dv[3];
    x5 = dv[4];
    x6 = dv[5];

    constraints[0] = (x1 + x2) / 2.0 - 1.0;
    constraints[1] = (6.0 - x1 - x2) / 6.0;
    constraints[2] = (2.0 - x2 + x1) / 2.0;
    constraints[3] = (2.0 - x1 + 3.0 * x2) / 2.0;
    constraints[4] = (4.0 - (x3 - 3.0) * (x3 - 3.0) - x4) / 4.0;
    constraints[5] = ((x5 - 3.0) * (x5 - 3.0) + x6 - 4.0) / 4.0;

    solution.setConstraints(constraints);

    double total = 0.0;
    int number = 0;
    for (int i = 0; i < constraints.length; i++) {
        if (constraints[i] < 0.0) {
            total += constraints[i];
            number++;
        }
    }
    solution.setOverallConstraintViolation(total);
    solution.setNumberOfViolatedConstraint(number);

}

---

From source file:org.um.feri.ears.problems.moo.misc.Tanaka.java

@Override
public void evaluateConstraints(MOSolutionBase<Double> solution) {
    double[] constraints = new double[numberOfConstraints];

    double[] dv = ArrayUtils.toPrimitive(solution.getVariables());

    double x1 = dv[0];
    double x2 = dv[1];

    constraints[0] = (x1 * x1 + x2 * x2 - 1.0 - 0.1 * Math.cos(16.0 * Math.atan(x1 / x2)));
    constraints[1] = -2.0 * ((x1 - 0.5) * (x1 - 0.5) + (x2 - 0.5) * (x2 - 0.5) - 0.5);

    solution.setConstraints(constraints);

    double total = 0.0;
    int number = 0;
    for (int i = 0; i < constraints.length; i++) {
        if (constraints[i] < 0.0) {
            total += constraints[i];/*from  w ww  .j  a va 2  s  .  co  m*/
            number++;
        }
    }
    solution.setOverallConstraintViolation(total);
    solution.setNumberOfViolatedConstraint(number);

}

---

From source file:org.um.feri.ears.problems.moo.wfg.WFG1.java

@Override
public double[] evaluate(Double[] ds) {
    double[] d = ArrayUtils.toPrimitive(ds);
    return evaluate(d);
}

---

From source file:org.ut.biolab.medsavant.client.project.ProjectWizard.java

private int[] mergeAnnIDsWithDefaults(int[] annIDs, int projID, int refID)
        throws RemoteException, SQLException, SessionExpiredException {
    /*LOG.info("WARNING: Debug code, temporarily disabled default annotation installation, line 714 of ProjectWizard.java");
    return annIDs;*///w ww. j ava  2s.  com
    // UNCOMMENT THIS BEFORE COMMITTING
    int[] defaults = manager.getDefaultAnnotationIDs(LoginController.getSessionID(), projID, refID);
    Set<Integer> a = new HashSet<Integer>();
    a.addAll(Arrays.asList(ArrayUtils.toObject(annIDs)));
    a.addAll(Arrays.asList(ArrayUtils.toObject(defaults)));
    return ArrayUtils.toPrimitive(a.toArray(new Integer[a.size()]));
}

---

From source file:org.ut.biolab.medsavant.server.db.variants.ImportUpdateManager.java

private static int[] getFileIds(String sessionId, int projectID, int referenceID, int updateID)
        throws SQLException, SessionExpiredException {
    TableSchema table = MedSavantDatabase.VariantFileTableSchema;
    SelectQuery sq = new SelectQuery();
    sq.addFromTable(table.getTable());/* w  w  w. j  a va  2 s .c  om*/
    sq.addColumns(table.getDBColumn(VariantFileTableSchema.COLUMNNAME_OF_FILE_ID));
    sq.addCondition(BinaryCondition
            .equalTo(table.getDBColumn(VariantFileTableSchema.COLUMNNAME_OF_REFERENCE_ID), referenceID));
    sq.addCondition(BinaryCondition.equalTo(table.getDBColumn(VariantFileTableSchema.COLUMNNAME_OF_PROJECT_ID),
            projectID));
    sq.addCondition(BinaryCondition.equalTo(table.getDBColumn(VariantFileTableSchema.COLUMNNAME_OF_UPLOAD_ID),
            updateID));

    ResultSet rs = ConnectionController.executeQuery(sessionId, sq.toString());
    List<Integer> fileIds = new ArrayList<Integer>();
    while (rs.next()) {
        fileIds.add(rs.getInt(VariantFileTableSchema.COLUMNNAME_OF_FILE_ID));
    }

    return ArrayUtils.toPrimitive(fileIds.toArray(new Integer[fileIds.size()]));
}

---

From source file:org.ut.biolab.medsavant.server.serverapi.CohortManager.java

@Override
public int[] getCohortIDs(String sid, int projectId) throws SQLException, SessionExpiredException {

    TableSchema table = MedSavantDatabase.CohortTableSchema;
    SelectQuery query = new SelectQuery();
    query.addFromTable(table.getTable());
    query.addColumns(table.getDBColumn(CohortTableSchema.COLUMNNAME_OF_COHORT_ID));
    query.addCondition(BinaryConditionMS.equalTo(table.getDBColumn(CohortTableSchema.COLUMNNAME_OF_PROJECT_ID),
            projectId));/*w w  w  . j  av a 2  s  .c o  m*/

    ResultSet rs = ConnectionController.executeQuery(sid, query.toString());

    List<Integer> result = new ArrayList<Integer>();
    while (rs.next()) {
        result.add(rs.getInt(1));
    }
    return ArrayUtils.toPrimitive(result.toArray(new Integer[0]));
}

---

From source file:org.ut.biolab.medsavant.server.serverapi.ProjectManager.java

@Override
public int[] getDefaultAnnotationIDs(String sessID, int projID, int refID)
        throws RemoteException, SQLException, SessionExpiredException {
    List<Integer> defaultAnnIds = new ArrayList<Integer>();
    Reference[] refs = ReferenceManager.getInstance().getReferences(sessID);
    String refStr = null;/*www. j  a v a2 s. c  o  m*/
    for (Reference ref : refs) {
        if (ref.getID() == refID) {
            refStr = ref.getName();
            break;
        }
    }
    if (refStr == null) { //can't find reference in database.
        LOG.error("Reference id " + refID + " is invalid");
        throw new SQLException("Reference id " + refID + " is invalid");
    }
    try {
        List<AnnotationDownloadInformation> annotations = AnnotationDownloadInformation
                .getDownloadableAnnotations(VersionSettings.getVersionString(), refStr);
        for (AnnotationDownloadInformation adi : annotations) {
            if (adi.isDefault()) {
                int id = AnnotationManager.getInstance().doInstallAnnotationForProject(sessID, projID, adi);
                if (id == -1) {
                    LOG.error("Couldn't install annotation " + adi + " for project " + projID);
                }
                defaultAnnIds.add(id);
                //break; //DEBUG CODE!  ONLY ALLOWS ONE ANNOTATION TO BE INSTALLED!
            }
        }
    } catch (Exception ex) {
        LOG.error(ex);
    }
    //return ids of these annotations.
    return ArrayUtils.toPrimitive(defaultAnnIds.toArray(new Integer[defaultAnnIds.size()]));
}

---

From source file:org.ut.biolab.medsavant.server.serverapi.ProjectManager.java

@Override
public int[] getReferenceIDsForProject(String sessID, int projID) throws SQLException, SessionExpiredException {

    TableSchema table = MedSavantDatabase.VarianttablemapTableSchema;

    SelectQuery query = new SelectQuery();
    query.addFromTable(table.getTable());
    query.addColumns(table.getDBColumn(VariantTablemapTableSchema.COLUMNNAME_OF_REFERENCE_ID));
    query.addCondition(BinaryConditionMS
            .equalTo(table.getDBColumn(VariantTablemapTableSchema.COLUMNNAME_OF_PROJECT_ID), projID));
    query.addCondition(BinaryConditionMS
            .equalTo(table.getDBColumn(VariantTablemapTableSchema.COLUMNNAME_OF_PUBLISHED), true));

    ResultSet rs = ConnectionController.executeQuery(sessID, query.toString());

    List<Integer> references = new ArrayList<Integer>();
    while (rs.next()) {
        references.add(rs.getInt(1));//from w w w .  j  av a 2  s.  co  m
    }

    return ArrayUtils.toPrimitive(references.toArray(new Integer[0]));
}

---

From source file:org.voltdb.TestExecutionSite.java

/**
 * Create a multiple partition transaction
 *///w w w.  j  a  v  a  2 s.  c o  m
private void createMPInitiation(boolean rollback, boolean rollback_all, boolean readOnly, int numberOfBatches,
        long txn_id, long safe_txn_id, long initiator_id, int partition_id, long coordinator_id,
        List<Long> participants) {
    ArrayList<Object> params = new ArrayList<Object>();
    params.add("number_of_batches");
    params.add(new Integer(numberOfBatches));
    final StoredProcedureInvocation spi = new StoredProcedureInvocation();
    if (!rollback) {
        spi.setProcName("org.voltdb.TestExecutionSite$MockMPVoltProcedure");
        params.add("txn_outcome");
        params.add("commit");
        params.add(new Integer(partition_id));
        spi.setParams(params.toArray());
    } else {
        if (rollback_all) {
            spi.setProcName("org.voltdb.TestExecutionSite$MockMPVoltProcedureRollbackParticipant");
            params.add("txn_outcome");
            params.add("rollback_all");
            params.add(new Integer(partition_id));
            spi.setParams(params.toArray());
        } else {
            spi.setProcName("org.voltdb.TestExecutionSite$MockMPVoltProcedureRollbackParticipant");
            params.add("txn_outcome");
            params.add("rollback_random");
            params.add(new Integer(partition_id));
            spi.setParams(params.toArray());
        }
    }

    testLog.info("Creating MP proc, TXN ID: " + txn_id + ", participants: " + participants.toString());

    assert (participants.size() == (SITE_COUNT - 1));
    final InitiateTaskMessage itm = new InitiateTaskMessage(initiator_id, coordinator_id, txn_id, readOnly,
            false, // multi-partition
            spi, safe_txn_id, // last safe txnid
            ArrayUtils.toPrimitive(participants.toArray(new Long[0])));
    itm.m_sourceHSId = initiator_id;
    m_mboxes.get(coordinator_id).deliver(itm);

    for (long participant : participants) {
        final MultiPartitionParticipantMessage mppm = new MultiPartitionParticipantMessage(initiator_id,
                coordinator_id, txn_id, readOnly);
        mppm.m_sourceHSId = initiator_id;
        m_mboxes.get(participant).deliver(mppm);
    }
}

---

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