Example usage for org.apache.hadoop.mapred JobConf setCombinerClass

Introduction

In this page you can find the example usage for org.apache.hadoop.mapred JobConf setCombinerClass.

Prototype

public void setCombinerClass(Class<? extends Reducer> theClass) 

Source Link

Document

Set the user-defined combiner class used to combine map-outputs before being sent to the reducers.

Usage

From source file:fr.worf.hadoop.scratchpad.Scratch2MapReduce.java

License:Apache License

/**
 * @param args the command line arguments
 * @throws java.io.IOException//  w  w w  .j  a  v a 2 s .c  o m
 */
public static void main(String[] args) throws IOException {
    JobConf job = new JobConf(Scratch2MapReduce.class);
    job.setJobName("wordcount");

    job.setOutputKeyClass(Text.class);
    job.setOutputValueClass(IntWritable.class);

    job.setMapperClass(Map.class);
    job.setCombinerClass(Reduce.class);
    job.setReducerClass(Reduce.class);

    job.setInputFormat(TextInputFormat.class);
    job.setOutputFormat(TextOutputFormat.class);

    FileInputFormat.setInputPaths(job, new Path("/home/slash/test/testfile1.txt"));
    FileOutputFormat.setOutputPath(job, new Path("/home/slash/test/testfile2.txt"));

    RunningJob runJob = JobClient.runJob(job);
}

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From source file:gov.nih.ncgc.hadoop.SmartsSearch.java

public int run(String[] args) throws Exception {
    JobConf jobConf = new JobConf(getConf(), HeavyAtomCount.class);
    jobConf.setJobName("smartsSearch");

    jobConf.setOutputKeyClass(Text.class);
    jobConf.setOutputValueClass(IntWritable.class);

    jobConf.setMapperClass(MoleculeMapper.class);
    jobConf.setCombinerClass(SmartsMatchReducer.class);
    jobConf.setReducerClass(SmartsMatchReducer.class);

    jobConf.setInputFormat(TextInputFormat.class);
    jobConf.setOutputFormat(TextOutputFormat.class);

    jobConf.setNumMapTasks(5);/*  w ww  . j av  a  2 s.  c o m*/

    if (args.length != 4) {
        System.err.println("Usage: ss <in> <out> <pattern> <license file>");
        System.exit(2);
    }

    FileInputFormat.setInputPaths(jobConf, new Path(args[0]));
    FileOutputFormat.setOutputPath(jobConf, new Path(args[1]));
    jobConf.setStrings("pattern", args[2]);

    // make the license file available vis dist cache
    DistributedCache.addCacheFile(new Path(args[3]).toUri(), jobConf);

    JobClient.runJob(jobConf);
    return 0;
}

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From source file:graphbuilding.GenomixDriver.java

License:Apache License

public void run(String inputPath, String outputPath, int numReducers, int sizeKmer, String defaultConfPath)
        throws IOException {

    JobConf conf = new JobConf(GenomixDriver.class);
    conf.setInt("sizeKmer", sizeKmer);

    if (defaultConfPath != null) {
        conf.addResource(new Path(defaultConfPath));
    }/*w  w w . j a  va 2s  .c o m*/

    conf.setJobName("Genomix Graph Building");
    conf.setMapperClass(GenomixMapper.class);
    conf.setReducerClass(GenomixReducer.class);
    conf.setCombinerClass(GenomixCombiner.class);

    conf.setMapOutputKeyClass(Kmer.class);
    conf.setMapOutputValueClass(KmerCountValue.class);

    conf.setInputFormat(TextInputFormat.class);
    conf.setOutputFormat(SequenceFileOutputFormat.class);
    conf.setOutputKeyClass(Kmer.class);
    conf.setOutputValueClass(KmerCountValue.class);
    FileInputFormat.setInputPaths(conf, new Path(inputPath));
    FileOutputFormat.setOutputPath(conf, new Path(outputPath));
    conf.setNumReduceTasks(numReducers);

    FileSystem dfs = FileSystem.get(conf);
    dfs.delete(new Path(outputPath), true);
    JobClient.runJob(conf);
}

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From source file:hadoopProcesses.testJob.java

public static void start(String[] args) {
    try {/*from w ww . j a  va  2 s. c  o m*/

        JobConf conf = new JobConf(WordCount.class);
        conf.setJobName("wordcount");

        conf.setOutputKeyClass(Text.class);
        conf.setOutputValueClass(IntWritable.class);

        map Map = new map();
        conf.setMapperClass(Map.getClass());

        reducer Reduce = new reducer();
        conf.setCombinerClass(Reduce.getClass());
        conf.setReducerClass(Reduce.getClass());

        conf.setInputFormat(TextInputFormat.class);
        conf.setOutputFormat(TextOutputFormat.class);

        FileInputFormat.setInputPaths(conf, new Path(args[1]));

        Path outputDir = new Path(args[2]);

        outputDir.getFileSystem(conf).delete(outputDir, true);
        FileSystem fs = FileSystem.get(conf);
        fs.delete(outputDir, true);

        FileOutputFormat.setOutputPath(conf, outputDir);

        JobClient.runJob(conf);

        FileSystem FS = FileSystem.get(conf);

        Path src = new Path(FS.getWorkingDirectory() + "/output/part-00000");

        if (FS.exists(src)) {
            System.out.println("\t\t------ Results ------ ");
            /*
             BufferedReader br = new BufferedReader(new InputStreamReader(fs.open(src)));
             String line;
             line = br.readLine();
             while (line != null) {
             System.out.println("\t" + line);
             line = br.readLine();
             }
             */

            List<String> FileList = (new fileInteractions()).readLines(src, conf);
            for (String LocString : FileList) {

                System.out.println(LocString);
            }
        }
    } catch (Exception Exp) {
        Exp.printStackTrace();
    }
}

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From source file:hibench.DataGenerator.java

License:Apache License

public void replaceIds(Path fcontent, Path fids, Path fjoin, ZipfRandom zipf) throws IOException {

    LOG.info("Replace Virtual Zipfian Ids with real Ids...");

    JobConf job = new JobConf(WebDataGen.class);
    String jobname = fcontent.getName() + " JOIN " + fids.getName() + " -> " + fjoin.getName();

    job.setJobName(jobname);/*from   w  w  w .j a va 2s .  c  o  m*/

    job.setOutputKeyClass(Text.class);
    job.setOutputValueClass(Text.class);

    MultipleInputs.addInputPath(job, fids, TextInputFormat.class, TagRecordsMapper.class);
    MultipleInputs.addInputPath(job, fcontent, TextInputFormat.class, ReverseContentMapper.class);
    job.setOutputFormat(TextOutputFormat.class);

    // use combiner to avoid too many inputs for reducer
    job.setCombinerClass(ConcatTextCombiner.class);
    job.setReducerClass(JoinContentWithZipfReducer.class);

    if (zipf.reds > 0) {
        job.setNumReduceTasks(zipf.reds);
    } else {
        job.setNumReduceTasks(DataOptions.getMaxNumReduce());
    }

    FileOutputFormat.setOutputPath(job, fjoin);

    LOG.info("Running Job: " + jobname);
    LOG.info("Zipfian Id distribution: " + fids);
    LOG.info("Content file with virtual Ids: " + fcontent);
    LOG.info("Joint result file: " + fjoin);
    JobClient.runJob(job);
    LOG.info("Finished Running Job: " + jobname);
}

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From source file:hibench.HiveDataGenerator.java

License:Apache License

private void createRankingsTable() throws IOException {

    LOG.info("Creating table rankings...");

    JobConf job = new JobConf(WebDataGen.class);
    String jobname = "Create " + paths.dname + " rankings";

    job.setJobName(jobname);/*from  w w  w .ja  va2  s.c  o  m*/

    job.setOutputKeyClass(NullWritable.class);
    job.setOutputValueClass(Text.class);
    job.setMapOutputKeyClass(Text.class);

    job.setCombinerClass(ConcatTextCombiner.class);
    job.setReducerClass(CountRankingAndReplaceIdReducer.class);

    if (options.reds > 0) {
        job.setNumReduceTasks(options.reds);
    } else {
        job.setNumReduceTasks(DataOptions.getMaxNumReduce());
    }

    //      job.setNumReduceTasks(options.agents/2);

    /***
     * need to join result with LINK table so that to replace
     * url ids with real contents
     */
    MultipleInputs.addInputPath(job, paths.getPath(DataPaths.T_LINK_PAGE), TextInputFormat.class,
            MyIdentityMapper.class);
    MultipleInputs.addInputPath(job, paths.getPath(DataPaths.LINKS), TextInputFormat.class,
            TagRecordsMapper.class);

    if (options.SEQUENCE_OUT) {
        job.setOutputFormat(SequenceFileOutputFormat.class);
    } else {
        job.setOutputFormat(TextOutputFormat.class);
    }

    if (null != options.codecClass) {
        job.set("mapred.output.compression.type", "BLOCK");

        FileOutputFormat.setCompressOutput(job, true);
        FileOutputFormat.setOutputCompressorClass(job, options.codecClass);
    }

    FileOutputFormat.setOutputPath(job, paths.getResult(DataPaths.RANKINGS));

    LOG.info("Running Job: " + jobname);
    LOG.info("Table link-page file " + paths.getPath(DataPaths.T_LINK_PAGE) + " as input");
    LOG.info("Links file " + paths.getResult(DataPaths.LINKS) + " as output");
    LOG.info("Ouput file " + paths.getResult(DataPaths.RANKINGS));
    JobClient.runJob(job);
    LOG.info("Finished Running Job: " + jobname);

    LOG.info("Cleaning temp files...");
    paths.cleanTempFiles(paths.getResult(DataPaths.RANKINGS));
}

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From source file:hibench.HiveDataGenerator.java

License:Apache License

private void createUserVisitsTable() throws IOException, URISyntaxException {

    LOG.info("Creating user visits...");

    JobConf job = new JobConf(WebDataGen.class);
    String jobname = "Create " + paths.dname + " uservisits";
    job.setJobName(jobname);//from   ww  w .j  a v a2 s. co  m

    /***
     * Set distributed cache file for table generation,
     * cache files include:
     * 1. user agents
     * 2. country code and language code
     * 3. search keys
     */

    DistributedCache.addCacheFile(paths.getPath(DataPaths.uagentf).toUri(), job);
    DistributedCache.addCacheFile(paths.getPath(DataPaths.countryf).toUri(), job);
    DistributedCache.addCacheFile(paths.getPath(DataPaths.searchkeyf).toUri(), job);

    job.setOutputKeyClass(NullWritable.class);
    job.setOutputValueClass(Text.class);
    job.setMapOutputKeyClass(Text.class);

    visit.setJobConf(job);

    job.setInputFormat(TextInputFormat.class);

    MultipleInputs.addInputPath(job, paths.getPath(DataPaths.DUMMY), NLineInputFormat.class,
            CreateRandomAccessMapper.class);
    MultipleInputs.addInputPath(job, paths.getPath(DataPaths.LINKS), TextInputFormat.class,
            TagRecordsMapper.class);

    job.setCombinerClass(CreateUserVisitsCombiner.class);
    job.setReducerClass(CreateUserVisitsReducer.class);

    if (options.reds > 0) {
        job.setNumReduceTasks(options.reds);
    } else {
        job.setNumReduceTasks(DataOptions.getMaxNumReduce());
    }

    //      job.setNumReduceTasks(options.agents/2);

    if (options.SEQUENCE_OUT) {
        job.setOutputFormat(SequenceFileOutputFormat.class);
    } else {
        job.setOutputFormat(TextOutputFormat.class);
    }

    if (null != options.codecClass) {
        job.set("mapred.output.compression.type", "BLOCK");
        FileOutputFormat.setCompressOutput(job, true);
        FileOutputFormat.setOutputCompressorClass(job, options.codecClass);
    }

    FileOutputFormat.setOutputPath(job, paths.getResult(DataPaths.USERVISITS));

    LOG.info("Running Job: " + jobname);
    LOG.info("Dummy file " + paths.getPath(DataPaths.DUMMY) + " as input");
    LOG.info("Links file " + paths.getResult(DataPaths.LINKS) + " as output");
    LOG.info("Ouput file " + paths.getResult(DataPaths.USERVISITS));
    JobClient.runJob(job);
    LOG.info("Finished Running Job: " + jobname);

    LOG.info("Cleaning temp files...");
    paths.cleanTempFiles(paths.getResult(DataPaths.USERVISITS));
}

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From source file:IndexService.IndexMergeMR.java

License:Open Source License

public static RunningJob run(String inputfiles, String outputdir, Configuration conf) {
    if (inputfiles == null || outputdir == null)
        return null;

    JobConf job = new JobConf(conf);
    job.setJobName("MergeIndexMR");
    job.setJarByClass(IndexMergeMR.class);
    job.setNumReduceTasks(1);//  w  w w .  j  a  v a2s  . c  o  m
    FileSystem fs = null;
    try {
        fs = FileSystem.get(job);
        fs.delete(new Path(outputdir), true);

        String[] ifs = inputfiles.split(",");
        TreeSet<String> files = new TreeSet<String>();
        for (int i = 0; i < ifs.length; i++) {
            IFormatDataFile ifdf = new IFormatDataFile(job);
            ifdf.open(ifs[i]);
            Collection<String> strs = ifdf.fileInfo().head().getUdi().infos().values();
            for (String str : strs) {
                files.add(str);
            }
            ifdf.close();
        }
        StringBuffer sb = new StringBuffer();
        for (String str : files) {
            sb.append(str + ",");
        }
        job.set(ConstVar.HD_index_filemap, sb.substring(0, sb.length() - 1));

        IFormatDataFile ifdf = new IFormatDataFile(job);
        ifdf.open(ifs[0]);

        HashMap<Integer, IRecord.IFType> map = ifdf.fileInfo().head().fieldMap().fieldtypes();
        ArrayList<String> fieldStrings = new ArrayList<String>();

        for (int i = 0; i < map.size(); i++) {
            IRecord.IFType type = map.get(i);
            fieldStrings.add(type.type() + ConstVar.RecordSplit + type.idx());
        }

        job.setStrings(ConstVar.HD_fieldMap, fieldStrings.toArray(new String[fieldStrings.size()]));
        job.set("datafiletype", ifdf.fileInfo().head().getUdi().infos().get(123456));
        ifdf.close();
    } catch (Exception e2) {
        e2.printStackTrace();
    }

    FileInputFormat.setInputPaths(job, inputfiles);
    FileOutputFormat.setOutputPath(job, new Path(outputdir));

    job.setOutputKeyClass(IndexKey.class);
    job.setOutputValueClass(IndexValue.class);

    job.setPartitionerClass(IndexMergePartitioner.class);

    job.setMapperClass(MergeIndexMap.class);
    job.setCombinerClass(MergeIndexReduce.class);
    job.setReducerClass(MergeIndexReduce.class);

    job.setInputFormat(IndexMergeIFormatInputFormat.class);
    job.setOutputFormat(IndexMergeIFormatOutputFormat.class);

    try {
        JobClient jc = new JobClient(job);
        return jc.submitJob(job);
    } catch (IOException e) {
        e.printStackTrace();
        return null;
    }
}

---

From source file:IndexService.IndexMR.java

License:Open Source License

public static RunningJob run(Configuration conf2, String inputfiles, boolean column, String ids,
        String outputdir) {//w ww.  j  ava 2 s .c  o  m
    if (inputfiles == null || outputdir == null)
        return null;

    JobConf conf = new JobConf(conf2);
    conf.setJobName("IndexMR:\t" + ids);
    conf.setJarByClass(IndexMR.class);
    FileSystem fs = null;
    try {
        fs = FileSystem.get(conf);
        fs.delete(new Path(outputdir), true);
    } catch (IOException e3) {
        e3.printStackTrace();
    }

    conf.set("index.ids", ids);
    if (column) {
        conf.set("datafiletype", "column");
    } else {
        conf.set("datafiletype", "format");
    }

    String[] ifs = inputfiles.split(",");
    long wholerecnum = 0;

    String[] idxs = ids.split(",");
    String[] fieldStrings = new String[idxs.length + 2];

    if (!column) {
        IFormatDataFile ifdf;
        try {
            ifdf = new IFormatDataFile(conf);
            ifdf.open(ifs[0]);
            for (int i = 0; i < idxs.length; i++) {
                int id = Integer.parseInt(idxs[i]);
                byte type = ifdf.fileInfo().head().fieldMap().fieldtypes().get(id).type();
                fieldStrings[i] = type + ConstVar.RecordSplit + i;
            }
            ifdf.close();
        } catch (IOException e) {
            e.printStackTrace();
        }
    } else {
        try {
            IColumnDataFile icdf = new IColumnDataFile(conf);
            icdf.open(ifs[0]);
            for (int i = 0; i < idxs.length; i++) {
                int id = Integer.parseInt(idxs[i]);
                byte type = icdf.fieldtypes().get(id).type();
                fieldStrings[i] = type + ConstVar.RecordSplit + i;
            }
            icdf.close();
        } catch (IOException e) {
            e.printStackTrace();
        }

    }

    fieldStrings[fieldStrings.length - 2] = ConstVar.FieldType_Short + ConstVar.RecordSplit
            + (fieldStrings.length - 2);
    fieldStrings[fieldStrings.length - 1] = ConstVar.FieldType_Int + ConstVar.RecordSplit
            + (fieldStrings.length - 1);

    conf.setStrings(ConstVar.HD_fieldMap, fieldStrings);

    if (!column) {
        conf.set(ConstVar.HD_index_filemap, inputfiles);
        for (String file : ifs) {
            IFormatDataFile fff;
            try {
                fff = new IFormatDataFile(conf);
                fff.open(file);
                wholerecnum += fff.segIndex().recnum();
                fff.close();
            } catch (IOException e) {
                e.printStackTrace();
            }
        }
    } else {
        HashSet<String> files = new HashSet<String>();
        for (String file : ifs) {
            files.add(file);
        }
        StringBuffer sb = new StringBuffer();
        for (String str : files) {
            sb.append(str).append(",");
        }
        conf.set(ConstVar.HD_index_filemap, sb.substring(0, sb.length() - 1));

        for (String file : files) {
            Path parent = new Path(file).getParent();
            try {
                FileStatus[] fss = fs.listStatus(parent);
                String openfile = "";
                for (FileStatus status : fss) {
                    if (status.getPath().toString().contains(file)) {
                        openfile = status.getPath().toString();
                        break;
                    }
                }
                IFormatDataFile fff = new IFormatDataFile(conf);
                fff.open(openfile);
                wholerecnum += fff.segIndex().recnum();
                fff.close();

            } catch (IOException e) {
                e.printStackTrace();
            } catch (Exception e) {
                e.printStackTrace();
            }
        }
    }

    conf.setNumReduceTasks((int) ((wholerecnum - 1) / (100000000) + 1));

    FileInputFormat.setInputPaths(conf, inputfiles);
    Path outputPath = new Path(outputdir);
    FileOutputFormat.setOutputPath(conf, outputPath);

    conf.setOutputKeyClass(IndexKey.class);
    conf.setOutputValueClass(IndexValue.class);

    conf.setPartitionerClass(IndexPartitioner.class);

    conf.setMapperClass(IndexMap.class);
    conf.setCombinerClass(IndexReduce.class);
    conf.setReducerClass(IndexReduce.class);

    if (column) {
        conf.setInputFormat(IColumnInputFormat.class);
    } else {
        conf.setInputFormat(IFormatInputFormat.class);
    }
    conf.setOutputFormat(IndexIFormatOutputFormat.class);

    try {
        JobClient jc = new JobClient(conf);
        return jc.submitJob(conf);
    } catch (IOException e) {
        e.printStackTrace();
        return null;
    }
}

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From source file:invertedIndex.startJob.java

public static void start(String[] args) {
    try {/*from   ww w.j  a  v a2s  .c o m*/
        JobConf conf = new JobConf(WordCount.class);
        conf.setJobName("wordcount");

        conf.setOutputKeyClass(Text.class);
        conf.setOutputValueClass(IntWritable.class);

        lineIndexMapper Map = new lineIndexMapper();
        conf.setMapperClass(Map.getClass());

        lineIndexReducer Reduce = new lineIndexReducer();
        conf.setCombinerClass(Reduce.getClass());
        conf.setReducerClass(Reduce.getClass());

        conf.setInputFormat(TextInputFormat.class);
        conf.setOutputFormat(TextOutputFormat.class);

        FileInputFormat.setInputPaths(conf, new Path(args[1]));

        Path outputDir = new Path(args[2]);

        outputDir.getFileSystem(conf).delete(outputDir, true);
        FileSystem fs = FileSystem.get(conf);
        fs.delete(outputDir, true);

        FileOutputFormat.setOutputPath(conf, outputDir);

        JobClient.runJob(conf);

    } catch (Exception Exp) {

        Exp.printStackTrace();
    }
}

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