Example usage for org.apache.hadoop.mapred JobConf setOutputFormat

Introduction

In this page you can find the example usage for org.apache.hadoop.mapred JobConf setOutputFormat.

Prototype

public void setOutputFormat(Class<? extends OutputFormat> theClass) 

Source Link

Document

Set the OutputFormat implementation for the map-reduce job.

Usage

From source file:edu.ncku.ikdd.TempRecord.java

public static void main(String[] argv) throws Exception {
    JobConf conf = new JobConf(TempRecord.class);
    conf.setJobName("temprecord");

    conf.setOutputKeyClass(IntWritable.class);
    conf.setOutputValueClass(IntWritable.class);

    conf.setMapperClass(Map.class);
    conf.setCombinerClass(Reduce.class);
    conf.setReducerClass(Reduce.class);

    conf.setInputFormat(TextInputFormat.class);
    conf.setOutputFormat(TextOutputFormat.class);

    FileInputFormat.setInputPaths(conf, new Path(argv[0]));
    FileOutputFormat.setOutputPath(conf, new Path(argv[1]));

    JobClient.runJob(conf);/*from w w  w  . j a  v  a2  s .  co  m*/
}

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From source file:edu.ncku.ikdd.TitleParser.java

public static void main(String[] argv) throws Exception {
    JobConf conf = new JobConf(TitleParser.class);
    conf.setJobName("titleparser");

    conf.setOutputKeyClass(Text.class);
    conf.setOutputValueClass(Text.class);

    conf.setMapperClass(Map.class);
    conf.setCombinerClass(Reduce.class);
    conf.setReducerClass(Reduce.class);

    conf.setInputFormat(TextInputFormat.class);
    conf.setOutputFormat(TextOutputFormat.class);

    FileInputFormat.setInputPaths(conf, new Path(argv[0]));
    FileOutputFormat.setOutputPath(conf, new Path(argv[1]));

    JobClient.runJob(conf);/*from  ww w.  ja va 2 s  .c o  m*/
}

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From source file:edu.ncku.ikdd.WordCount.java

public static void main(String[] argv) throws Exception {
    JobConf conf = new JobConf(WordCount.class);
    conf.setJobName("wordcount");

    conf.setOutputKeyClass(Text.class);
    conf.setOutputValueClass(IntWritable.class);

    conf.setMapperClass(Map.class);
    conf.setCombinerClass(Reduce.class);
    conf.setReducerClass(Reduce.class);

    conf.setInputFormat(TextInputFormat.class);
    conf.setOutputFormat(TextOutputFormat.class);

    FileInputFormat.setInputPaths(conf, new Path(argv[0]));
    FileOutputFormat.setOutputPath(conf, new Path(argv[1]));

    JobClient.runJob(conf);//from   ww w .  j  a  va2 s . c o m
}

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From source file:edu.ohsu.sonmezsysbio.cloudbreak.command.CommandNovoalignSingleEnds.java

public void runHadoopJob(Configuration configuration) throws IOException, URISyntaxException {
    JobConf conf = new JobConf(configuration);

    conf.setJobName("Single End Alignment");
    conf.setJarByClass(Cloudbreak.class);
    FileInputFormat.addInputPath(conf, new Path(hdfsDataDir));
    Path outputDir = new Path(hdfsAlignmentsDir);
    FileSystem.get(conf).delete(outputDir);
    FileOutputFormat.setOutputPath(conf, outputDir);

    addDistributedCacheFile(conf, reference, "novoalign.reference");

    addDistributedCacheFile(conf, pathToNovoalign, "novoalign.executable");
    if (pathToNovoalignLicense != null) {
        addDistributedCacheFile(conf, pathToNovoalignLicense, "novoalign.license");
    }/* ww w  . jav  a2s  .c o  m*/

    DistributedCache.createSymlink(conf);
    conf.set("mapred.task.timeout", "3600000");
    conf.set("novoalign.threshold", threshold);
    conf.set("novoalign.quality.format", qualityFormat);

    conf.setInputFormat(SequenceFileInputFormat.class);

    conf.setMapperClass(NovoalignSingleEndMapper.class);
    conf.setMapOutputKeyClass(Text.class);
    conf.setMapOutputValueClass(Text.class);
    conf.setCompressMapOutput(true);

    conf.setReducerClass(SingleEndAlignmentsToPairsReducer.class);
    conf.setOutputFormat(SequenceFileOutputFormat.class);
    conf.setOutputKeyClass(Text.class);
    conf.setOutputValueClass(Text.class);

    conf.set("mapred.output.compress", "true");
    conf.set("mapred.output.compression", "org.apache.hadoop.io.compress.SnappyCodec");

    JobClient.runJob(conf);

}

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From source file:edu.stolaf.cs.wmrserver.HadoopEngine.java

License:Apache License

public void submit(JobRequest request, long submissionID, File mapperFile, File reducerFile, File packageDir,
        Path inputPath) throws ValidationException, NotFoundException, CompilationException, InternalException {
    // Generate job output path
    Path outputDir = new Path(_homeDir, "out");
    Path outputPath;/*from w ww.  j a  v a2  s .  c  o m*/
    try {
        FileSystem fs = outputDir.getFileSystem(new Configuration());
        outputPath = JobServiceHandler.getNonexistantPath(outputDir, request.getName(), fs);
    } catch (IOException ex) {
        throw JobServiceHandler.wrapException("Could not construct output path.", ex);
    }

    JobConf conf = new JobConf();
    conf.setJobName(request.getName());

    // Set mapper and number of tasks if specified
    StreamJob.setStreamMapper(conf, mapperFile.toString());
    if (request.isSetMapTasks())
        conf.setNumMapTasks(request.getMapTasks());

    // Set reducer and number of tasks if specified
    StreamJob.setStreamReducer(conf, reducerFile.toString());
    if (request.isSetReduceTasks())
        conf.setNumReduceTasks(request.getReduceTasks());

    // Create and set job JAR, including necessary files
    ArrayList<String> jarFiles = new ArrayList<String>();
    jarFiles.add(packageDir.toString());
    String jarPath;
    try {
        jarPath = StreamJob.createJobJar(conf, jarFiles, _tempDir);
    } catch (IOException ex) {
        throw JobServiceHandler.wrapException("Could not create job jar.", ex);
    }
    if (jarPath != null)
        conf.setJar(jarPath);

    // TODO: This is a hack. Rewrite streaming to use DistributedCache.
    //conf.setPattern("mapreduce.job.jar.unpack.pattern",
    //              Pattern.compile(".*"));

    // Set I/O formats and paths
    conf.setInputFormat(KeyValueTextInputFormat.class);
    conf.setOutputFormat(TextOutputFormat.class);
    conf.setOutputKeyClass(Text.class);
    conf.setOutputValueClass(Text.class);
    FileInputFormat.addInputPath(conf, inputPath);
    FileOutputFormat.setOutputPath(conf, outputPath);

    // Use numeric sort if appropriate
    conf.setBoolean(CONF_NUMERIC, request.isNumericSort());
    if (request.isNumericSort()) {
        conf.setOutputKeyComparatorClass(KeyFieldBasedComparator.class);
        conf.setPartitionerClass(KeyFieldBasedPartitioner.class);
        conf.setKeyFieldComparatorOptions("-n");
        conf.setKeyFieldPartitionerOptions("-n");
    }

    // Set other job information
    conf.set(CONF_USER, request.getUser());
    conf.set(CONF_LANGUAGE, request.getLanguage());
    conf.set(CONF_MAPPER, request.getMapper());
    conf.set(CONF_REDUCER, request.getReducer());

    // Attempt to submit the job

    RunningJob job;
    try {
        JobClient client = new JobClient(new JobConf());
        job = client.submitJob(conf);
    } catch (IOException ex) {
        throw JobServiceHandler.wrapException("There was a serious error while attempting to submit the job.",
                ex);
    }

    try {
        SubmissionDatabase.setSubmitted(submissionID);
        SubmissionDatabase.setHadoopID(submissionID, job.getID().toString());
    } catch (SQLException ex) {
        throw JobServiceHandler.wrapException("Could not update submission in database.", ex);
    }
}

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From source file:edu.ub.ahstfg.indexer.Indexer.java

License:Open Source License

@Override
public int run(String[] arg0) throws Exception {
    LOG.info("Creating Hadoop job for Indexer.");
    JobConf job = new JobConf(getConf());
    job.setJarByClass(Indexer.class);

    LOG.info("Setting input path to '" + INPUT_PATH + "'");
    FileInputFormat.setInputPaths(job, new Path(INPUT_PATH));
    // Set filters if it's necessary.

    LOG.info("Clearing the output path at '" + OUTPUT_PATH + "'");
    // Change URI to Path if it's necessary.
    FileSystem fs = FileSystem.get(new URI(OUTPUT_PATH), job);

    if (fs.exists(new Path(OUTPUT_PATH))) {
        fs.delete(new Path(OUTPUT_PATH), true);
    }/*from   ww  w. ja  va2  s.c om*/

    LOG.info("Setting output path to '" + OUTPUT_PATH + "'");
    FileOutputFormat.setOutputPath(job, new Path(OUTPUT_PATH));
    FileOutputFormat.setCompressOutput(job, false);

    LOG.info("Setting input format.");
    job.setInputFormat(ArcInputFormat.class);
    LOG.info("Setting output format.");
    job.setOutputFormat(IndexOutputFormat.class);

    LOG.info("Setting output data types.");
    job.setOutputKeyClass(Text.class);
    job.setOutputValueClass(IndexRecord.class);

    LOG.info("Setting mapper and reducer.");
    job.setMapperClass(IndexerMapper.class);
    job.setMapOutputValueClass(ParsedDocument.class);
    job.setReducerClass(IndexerReducer.class);

    if (JobClient.runJob(job).isSuccessful()) {
        return 0;
    } else {
        return 1;
    }
}

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From source file:edu.ub.ahstfg.indexer.wordcount.WordCount.java

License:Open Source License

@Override
public int run(String[] args) throws Exception {

    LOG.info("Creating Hadoop job for ARC input files word count.");
    JobConf job = new JobConf(getConf());
    job.setJarByClass(WordCount.class);

    LOG.info("Setting input path to '" + inputPath + "'");
    FileInputFormat.setInputPaths(job, new Path(inputPath));
    // Set filters if it's necessary.

    LOG.info("Clearing the output path at '" + outputPath + "'");
    // Change URI to Path if it's necessary.
    FileSystem fs = FileSystem.get(new URI(outputPath), job);

    if (fs.exists(new Path(outputPath))) {
        fs.delete(new Path(outputPath), true);
    }//from   ww w .  ja  v  a2s .  c  o  m

    LOG.info("Setting output path to '" + outputPath + "'");
    FileOutputFormat.setOutputPath(job, new Path(outputPath));
    FileOutputFormat.setCompressOutput(job, false);

    LOG.info("Setting input format.");
    // job.setInputFormat(TextInputFormat.class);
    job.setInputFormat(ArcInputFormat.class);
    LOG.info("Setting output format.");
    job.setOutputFormat(TextOutputFormat.class);

    LOG.info("Setting output data types.");
    job.setOutputKeyClass(Text.class);
    job.setOutputValueClass(LongWritable.class);

    LOG.info("Setting mapper and reducer.");
    // job.setMapperClass(WordCountTextInputMapper.class);
    job.setMapperClass(WordCountArcInputMapper.class);
    job.setReducerClass(LongSumReducer.class);

    if (JobClient.runJob(job).isSuccessful()) {
        return 0;
    } else {
        return 1;
    }
}

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From source file:edu.uci.ics.pregelix.example.utils.DuplicateGraph.java

License:Apache License

public static void main(String[] args) throws IOException {
    JobConf job = new JobConf(DuplicateGraph.class);

    job.setJobName(DuplicateGraph.class.getSimpleName());
    job.setMapperClass(MapRecordOnly.class);
    job.setMapOutputKeyClass(Text.class);
    job.setMapOutputValueClass(Text.class);
    job.setInputFormat(TextInputFormat.class);
    job.setOutputFormat(TextOutputFormat.class);

    job.setInputFormat(TextInputFormat.class);
    FileInputFormat.setInputPaths(job, args[0]);
    FileOutputFormat.setOutputPath(job, new Path(args[1]));
    job.setNumReduceTasks(0);/*from w  w w .  j  ava 2 s.  c o m*/
    JobClient.runJob(job);
}

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From source file:edu.ucsb.cs.hybrid.HybridDriver.java

License:Apache License

public static void main(String args[]) throws ParseException, IOException {

    // job.set("mapred.job.tracker", "local");
    // job.set("fs.default.name", "file:///");

    JobConf job = new JobConf();
    job.setJarByClass(HybridDriver.class);
    new GenericOptionsParser(job, args);
    setMapperAndRunner(job);/*w w w  . ja  v a  2 s .  com*/
    job.setMapOutputKeyClass(DocDocWritable.class);
    job.setMapOutputValueClass(FloatWritable.class);
    job.setNumReduceTasks(0);
    job.setOutputKeyClass(DocDocWritable.class);
    job.setOutputValueClass(FloatWritable.class);

    Path inputPath = new Path(INPUT_DIR);
    CustomSequenceFileInputFormat.addInputPath(job, inputPath);
    Path outputPath = new Path(OUTPUT_DIR);
    job.setOutputFormat(SequenceFileOutputFormat.class);
    SequenceFileOutputFormat.setOutputPath(job, outputPath);
    FileSystem.get(job).delete(outputPath, true);

    job.setBoolean("fs.hdfs.impl.disable.cache", true); //xun not sure if needed

    if (job.getBoolean(Config.SPLITABLE_PROPERTY, Config.SPLITABLE_VALUE)) {
        job.setInputFormat(CustomSequenceFileInputFormat.class);
        Long splitMB = job.getLong(Config.SPLIT_MB_PROPERTY, Config.SPLIT_MB_VALUE) * 1024 * 1024;
        job.setLong("mapred.min.split.size", splitMB);
        job.setLong("mapred.max.split.size", splitMB);
        job.setLong("dfs.block.size", splitMB);
    } else {
        //  Comment the following of splitter for www experiments it assumes no splitting
        // of partitions for load balancing, should be fixed.
        Splitter.configure(job, inputPath);// remove comment unless for www
        job.setInputFormat(NonSplitableSequenceInputFormat.class); //remove comment
    }
    //SIGIR'14 two-stage balancing //not yet fully incorporated 
    if (job.getInt(Config.LOAD_BALANCE_PROPERTY, Config.LOAD_BALANCE_VALUE) != 0) {
        TwoStageLoadbalancing.main(job.getInt(Config.LOAD_BALANCE_PROPERTY, Config.LOAD_BALANCE_VALUE),
                new Path(PartDriver.OUTPUT_DIR), job);
    }
    JobSubmitter.run(job, "SIMILARITY", job.getFloat(Config.THRESHOLD_PROPERTY, Config.THRESHOLD_VALUE));
    if (job.getBoolean(Config.CONVERT_TEXT_PROPERTY, Config.CONVERT_TEXT_VALUE))
        IDMappingJob(args);
}

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From source file:edu.ucsb.cs.hybrid.HybridDriver.java

License:Apache License

public static void IDMappingJob(String[] args) throws IOException {

    JobConf job = new JobConf();
    new GenericOptionsParser(job, args);
    job.setJarByClass(HybridDriver.class);
    job.setJobName("Converting binary similarity scores to text");
    job.setMapperClass(IDMapper.class);
    job.setMapOutputKeyClass(Text.class);
    job.setMapOutputValueClass(Text.class);
    job.setNumReduceTasks(0);//ww  w .  ja  v  a 2s.  c o  m
    job.setOutputKeyClass(Text.class);
    job.setOutputValueClass(Text.class);

    Path inputPath = new Path(OUTPUT_DIR);
    job.setInputFormat(SequenceFileInputFormat.class);
    SequenceFileInputFormat.setInputPaths(job, inputPath);
    Path outputPath = new Path("SimilarityScores");
    job.setOutputFormat(TextOutputFormat.class);
    SequenceFileOutputFormat.setOutputPath(job, outputPath);
    FileSystem.get(job).delete(outputPath, true);
    HashPagesDriver.prepareDistribCache(job, HashPagesDriver.IDS_FILE2); //remove not sure
    JobSubmitter.run(job, "BINARY TO TEXT", job.getFloat(Config.THRESHOLD_PROPERTY, Config.THRESHOLD_VALUE));
}

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