Example usage for org.jfree.chart.plot XYPlot addRangeMarker

List of usage examples for org.jfree.chart.plot XYPlot addRangeMarker

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Introduction

In this page you can find the example usage for org.jfree.chart.plot XYPlot addRangeMarker.

Prototype

public void addRangeMarker(Marker marker)

Source Link

Document

Adds a marker for the range axis and sends a PlotChangeEvent to all registered listeners.

Usage

From source file:org.gwaspi.reports.GenericReportGenerator.java

private static void appendToCombinedRangeManhattanPlot(CombinedRangeXYPlot combinedPlot, String chromosome,
        XYSeriesCollection currChrSC, boolean showlables, double threshold, Color background,
        Color backgroundAlternative, Color main) {

    XYLineAndShapeRenderer renderer = new XYLineAndShapeRenderer(false, true);

    // Set dot shape of the currently appended Series
    renderer.setSeriesPaint(currChrSC.getSeriesCount() - 1, main);
    renderer.setSeriesVisibleInLegend(currChrSC.getSeriesCount() - 1, showlables);
    renderer.setSeriesShape(currChrSC.getSeriesCount() - 1, new Rectangle2D.Double(-1.0, -1.0, 2.0, 2.0));

    // Set range axis
    if (combinedPlot.getSubplots().isEmpty()) {
        LogAxis rangeAxis = new LogAxis("P value");
        rangeAxis.setBase(10);//from   w w  w.ja  v a 2s .c o m
        rangeAxis.setInverted(true);
        rangeAxis.setNumberFormatOverride(FORMAT_P_VALUE);

        rangeAxis.setTickMarkOutsideLength(2.0f);
        rangeAxis.setMinorTickCount(2);
        rangeAxis.setMinorTickMarksVisible(true);
        rangeAxis.setAxisLineVisible(true);
        rangeAxis.setUpperMargin(0);

        TickUnitSource units = NumberAxis.createIntegerTickUnits();
        rangeAxis.setStandardTickUnits(units);

        combinedPlot.setRangeAxis(0, rangeAxis);
    }

    // Build subchart
    JFreeChart subchart = ChartFactory.createScatterPlot("", "Chr " + chromosome, "", currChrSC,
            PlotOrientation.VERTICAL, false, false, false);

    // Get subplot from subchart
    XYPlot subplot = (XYPlot) subchart.getPlot();
    subplot.setRenderer(renderer);
    subplot.setBackgroundPaint(null);

    // CHART BACKGROUD COLOR
    if (combinedPlot.getSubplots().size() % 2 == 0) {
        subplot.setBackgroundPaint(background); // Hue, saturation, brightness
    } else {
        subplot.setBackgroundPaint(backgroundAlternative); // Hue, saturation, brightness
    }

    // Add significance Threshold to subplot
    final Marker thresholdLine = new ValueMarker(threshold);
    thresholdLine.setPaint(Color.red);
    // Add legend to hetzyThreshold
    if (showlables) {
        thresholdLine.setLabel("P = " + FORMAT_P_VALUE.format(threshold));
    }
    thresholdLine.setLabelAnchor(RectangleAnchor.TOP_RIGHT);
    thresholdLine.setLabelTextAnchor(TextAnchor.BOTTOM_RIGHT);
    subplot.addRangeMarker(thresholdLine);

    // Chromosome Axis Labels
    NumberAxis chrAxis = (NumberAxis) subplot.getDomainAxis();
    chrAxis.setLabelAngle(1.0);
    chrAxis.setAutoRangeIncludesZero(false);
    chrAxis.setAxisLineVisible(true);

    chrAxis.setTickLabelsVisible(false);
    chrAxis.setTickMarksVisible(false);
    //      chrAxis.setNumberFormatOverride(Report_Analysis.FORMAT_SCIENTIFIC);
    //      TickUnitSource units = NumberAxis.createIntegerTickUnits();
    //      chrAxis.setStandardTickUnits(units);

    //combinedPlot.setGap(0);
    combinedPlot.add(subplot, 1);
}

From source file:grafix.graficos.eixos.Eixo.java

protected void incluirMarcaIntraday(final XYPlot plot, final JanelaGraficos janela) {
    if (Controle.getConfiguracoesVolateis().isIntraday()) {
        MarcaGrafica m = new MarcaGrafica("", "INTRADAY",
                janela.getAcao().getRegistro(janela.getAcao().getNumeroRegistros() - 1).getData(), Color.BLUE);
        if (m.isRangeMarker()) {
            if (getNomeEixo().equals(m.getNomeEixo())) {
                plot.addRangeMarker(gerarRangeMarker(m));
            }//from   ww w .j ava 2  s. c om
        } else {
            plot.addDomainMarker(gerarIntervalMarker(m, janela));
        }
    }
}

From source file:Business.Chart.ChartBP.java

public ChartBP(final String applicationTitle, String chartTitle, HospitalWorkRequest workRequest) {
    super(applicationTitle);
    series6 = new TimeSeries("Blood Pressure");
    this.chartTitle = chartTitle;
    this.workRequest = workRequest;
    final XYDataset dataset1 = createDatasetBP(workRequest);
    final JFreeChart chart1 = createChart1(dataset1);
    final XYPlot plot = chart1.getXYPlot();
    HospitalWorkRequest hos1 = (HospitalWorkRequest) workRequest;
    int age = hos1.getPerson().getAge();
    int a = hos1.getPerson().getAboveBPMarker(age);
    int b = hos1.getPerson().getBelowBPMarker(age);
    ValueMarker valueMarker = new ValueMarker(a);
    valueMarker.setLabel("ALERT");
    valueMarker.setLabelTextAnchor(TextAnchor.TOP_CENTER);
    valueMarker.setPaint(Color.blue);
    ValueMarker valueMarker1 = new ValueMarker(b);
    valueMarker1.setLabel("ALERT");
    valueMarker1.setLabelTextAnchor(TextAnchor.TOP_CENTER);
    valueMarker1.setPaint(Color.BLUE);
    plot.addRangeMarker(valueMarker);
    plot.addRangeMarker(valueMarker1);//from   w  w w.  j av  a 2s  . com
}

From source file:Business.Chart.ChartBloodPressure.java

public ChartBloodPressure(final String applicationTitle, String chartTitle, HospitalWorkRequest workRequest) {
    super(applicationTitle);
    series6 = new TimeSeries("Blood Pressure");
    this.workRequest = workRequest;
    this.chartTitle = chartTitle;

    final XYDataset dataset6 = createDatasetBloodPressure(workRequest);
    final JFreeChart chart6 = createChart(dataset6);
    //final XYDataset dataset1 =  createDatasetBloodPressure(workRequest );
    //final JFreeChart chart1 = createChart1( dataset1 );
    final XYPlot plot = chart6.getXYPlot();
    HospitalWorkRequest hos1 = (HospitalWorkRequest) workRequest;
    int age = hos1.getPerson().getAge();
    int a = hos1.getPerson().getAboveBPMarker(age);
    int b = hos1.getPerson().getBelowBPMarker(age);
    ValueMarker valueMarker = new ValueMarker(a);
    valueMarker.setLabel("ALERT");
    valueMarker.setLabelTextAnchor(TextAnchor.TOP_CENTER);
    valueMarker.setPaint(Color.blue);
    ValueMarker valueMarker1 = new ValueMarker(b);
    valueMarker1.setLabel("ALERT");
    valueMarker1.setLabelTextAnchor(TextAnchor.TOP_CENTER);
    valueMarker1.setPaint(Color.BLUE);
    plot.addRangeMarker(valueMarker);
    plot.addRangeMarker(valueMarker1);/* ww w  .  j  a  v  a2 s .  c om*/
    //ChartFrame frame = new ChartFrame("series chart", chart);
    //      frame.setVisible(true);
    //     frame.setSize(450, 350);
    final ChartPanel chartPanel6 = new ChartPanel(chart6);
    chartPanel6.setPreferredSize(new java.awt.Dimension(560, 370));
    chartPanel6.setMouseZoomable(true, false);
    setContentPane(chartPanel6);
    getContentPane().repaint();
}

From source file:bicat.gui.GraphicPane.java

public void updateGraphic() {

    // this.remove(chartPanel);

    org.jfree.data.xy.XYSeries[] series = new org.jfree.data.xy.XYSeries[graphDataList.size()]; // = new org.jfree.data.xy.XYSeries("Gene
    // Profile",true,false);
    gProfiles = new org.jfree.data.xy.DefaultTableXYDataset();

    System.out.println("Created empty gene expressions...." + graphDataList.size());
    ///*from  w ww . j  a va 2  s.  c  o  m*/
    for (int j = 0; j < graphDataList.size(); j++) {

        if (MethodConstants.debug)
            System.out.println("\n\nNew profile: ");
        series[j] = new org.jfree.data.xy.XYSeries("Gene Profile " + j + "", true, false);

        float[] expressions = (float[]) graphDataList.get(j);
        for (int i = 0; i < expressions.length; i++) {
            /*
             * if(chipList.contains(new Integer(i))) series[j].add(i,
             * expressions[i] - 1); //-owner.CONTRAST_VALUE); else
             */
            series[j].add(i, expressions[i]);
            if (MethodConstants.debug)
                System.out.print(expressions[i] + ", ");
        }

        gProfiles.addSeries(series[j]);

        // series.clear();
        expressions = null;
    }

    // System.out.println("Added gene profiles");

    chart = null;
    double[] chips = new double[chipList.size()];
    for (int p = 0; p < chips.length; p++)
        chips[p] = ((Integer) chipList.get(p)).doubleValue();
    chart = myCreateXYLineChart("Expression profiles of Biclusters", "conditions", "gene expression", gProfiles,
            chips, org.jfree.chart.plot.PlotOrientation.VERTICAL, // HORIZONTAL,
            true, true, false);

    // chart.draw();
    // chart.draw();

    org.jfree.chart.plot.XYPlot xyPlot = (org.jfree.chart.plot.XYPlot) chart.getPlot();
    xyPlot.addRangeMarker(new org.jfree.chart.plot.ValueMarker(10.0));
    // chart.plotChanged(null);

    chartPanel = new org.jfree.chart.ChartPanel(chart); // ChartPanel(chart);
    this.removeAll();
    this.add(chartPanel);
    this.setVisible(true);

    owner.getGraphScrollPane().repaint();
}

From source file:Business.Chart.ChartHeartRate.java

public ChartHeartRate(final String applicationTitle, String chartTitle, HospitalWorkRequest workRequest) {
    super(applicationTitle);
    series = new TimeSeries("Heart Rate");
    this.workRequest = workRequest;
    this.chartTitle = chartTitle;

    final XYDataset dataset = createDatasetHeartRate(workRequest);
    final JFreeChart chart = createChart(dataset);
    //final XYDataset dataset1 =  createDatasetBloodPressure(workRequest );
    //final JFreeChart chart1 = createChart1( dataset1 );
    final XYPlot plot = chart.getXYPlot();
    HospitalWorkRequest hos1 = (HospitalWorkRequest) workRequest;
    int age = hos1.getPerson().getAge();
    int a = hos1.getPerson().getAboveHeartRateMarker(age);
    int b = hos1.getPerson().getBelowHeartRateMarker(age);
    ValueMarker valueMarker = new ValueMarker(a);
    valueMarker.setLabel("ALERT");
    valueMarker.setLabelTextAnchor(TextAnchor.TOP_CENTER);
    valueMarker.setPaint(Color.blue);
    ValueMarker valueMarker1 = new ValueMarker(b);
    valueMarker1.setLabel("ALERT");
    valueMarker1.setLabelTextAnchor(TextAnchor.TOP_CENTER);
    valueMarker1.setPaint(Color.BLUE);
    plot.addRangeMarker(valueMarker);
    plot.addRangeMarker(valueMarker1);// w  w w. j av a 2  s . co m
    //ChartFrame frame = new ChartFrame("series chart", chart);
    //      frame.setVisible(true);
    //     frame.setSize(450, 350);
    final ChartPanel chartPanel = new ChartPanel(chart);
    chartPanel.setPreferredSize(new java.awt.Dimension(560, 370));
    chartPanel.setMouseZoomable(true, false);
    setContentPane(chartPanel);
    getContentPane().repaint();
}

From source file:Business.Chart.Temperature.java

public Temperature(final String applicationTitle, String chartTitle, HospitalWorkRequest workRequest) {
    super(applicationTitle);
    series3 = new TimeSeries("Temperature");
    this.workRequest = workRequest;
    this.chartTitle = chartTitle;

    final XYDataset dataset3 = createDatasetTemperature(workRequest);
    final JFreeChart chart3 = createChart(dataset3);
    final XYPlot plot = chart3.getXYPlot();
    HospitalWorkRequest hos1 = (HospitalWorkRequest) workRequest;
    int age = hos1.getPerson().getAge();
    int a = hos1.getPerson().getAboveTemperatureRateMarker(age);
    int b = hos1.getPerson().getBelowTemperatureRateMarker(age);
    ValueMarker valueMarker = new ValueMarker(a);
    valueMarker.setLabel("ALERT");
    valueMarker.setLabelTextAnchor(TextAnchor.TOP_CENTER);
    valueMarker.setPaint(Color.blue);
    ValueMarker valueMarker1 = new ValueMarker(b);
    valueMarker1.setLabel("ALERT");
    valueMarker1.setLabelTextAnchor(TextAnchor.TOP_CENTER);
    valueMarker1.setPaint(Color.BLUE);
    plot.addRangeMarker(valueMarker);
    plot.addRangeMarker(valueMarker1);/*from  w w w.j a  v a  2  s . c o  m*/
    final ChartPanel chartPanel = new ChartPanel(chart3);
    chartPanel.setPreferredSize(new java.awt.Dimension(560, 370));
    chartPanel.setMouseZoomable(true, false);
    setContentPane(chartPanel);
    getContentPane().repaint();
}

From source file:Business.Chart.ChartRespiratory.java

public ChartRespiratory(final String applicationTitle, String chartTitle, HospitalWorkRequest workRequest) {
    super(applicationTitle);
    repaint();//from w w  w .j  a v a2 s.  c om
    series2 = new TimeSeries("Respiratory Rate");
    this.workRequest = workRequest;
    this.chartTitle = chartTitle;

    final XYDataset dataset2 = createDatasetRespiratoryRate(workRequest);
    final JFreeChart chart2 = createChart(dataset2);
    final XYPlot plot = chart2.getXYPlot();
    HospitalWorkRequest hos1 = (HospitalWorkRequest) workRequest;
    int age = hos1.getPerson().getAge();
    int a = hos1.getPerson().getAboveRespirationRateMarker(age);
    int b = hos1.getPerson().getBelowRespirationRateMarker(age);
    ValueMarker valueMarker = new ValueMarker(a);
    valueMarker.setLabel("ALERT");
    valueMarker.setLabelTextAnchor(TextAnchor.TOP_CENTER);
    valueMarker.setPaint(Color.blue);
    ValueMarker valueMarker1 = new ValueMarker(b);
    valueMarker1.setLabel("ALERT");
    valueMarker1.setLabelTextAnchor(TextAnchor.TOP_CENTER);
    valueMarker1.setPaint(Color.BLUE);
    plot.addRangeMarker(valueMarker);
    plot.addRangeMarker(valueMarker1);
    final ChartPanel chartPanel = new ChartPanel(chart2);
    chartPanel.setPreferredSize(new java.awt.Dimension(560, 370));
    chartPanel.setMouseZoomable(true, false);
    setContentPane(chartPanel);
    getContentPane().repaint();
}

From source file:org.jfree.chart.demo.MarkerDemo2.java

private static JFreeChart createChart(XYDataset xydataset) {
    JFreeChart jfreechart = ChartFactory.createXYLineChart("Marker Demo 2", "X", "Temperature", xydataset,
            PlotOrientation.VERTICAL, false, true, false);
    XYPlot xyplot = (XYPlot) jfreechart.getPlot();
    xyplot.setDomainGridlinePaint(Color.lightGray);
    xyplot.setDomainGridlineStroke(new BasicStroke(1.0F));
    xyplot.setRangeGridlinePaint(Color.lightGray);
    xyplot.setRangeGridlineStroke(new BasicStroke(1.0F));
    xyplot.setRangeTickBandPaint(new Color(240, 240, 240));
    PeriodAxis periodaxis = new PeriodAxis(null, new Hour(0, 30, 6, 2005), new Hour(23, 30, 6, 2005));
    PeriodAxisLabelInfo aperiodaxislabelinfo[] = new PeriodAxisLabelInfo[2];
    aperiodaxislabelinfo[0] = new PeriodAxisLabelInfo(org.jfree.data.time.Hour.class,
            new SimpleDateFormat("HH"));
    aperiodaxislabelinfo[1] = new PeriodAxisLabelInfo(org.jfree.data.time.Day.class,
            new SimpleDateFormat("dd-MMM"));
    periodaxis.setLabelInfo(aperiodaxislabelinfo);
    xyplot.setDomainAxis(periodaxis);/*from w w w  .j  a v  a2  s.  c  o  m*/
    ValueAxis valueaxis = xyplot.getRangeAxis();
    valueaxis.setRange(0.0D, 100D);
    XYItemRenderer xyitemrenderer = xyplot.getRenderer();
    xyitemrenderer.setSeriesPaint(0, Color.green);
    xyitemrenderer.setSeriesStroke(0, new BasicStroke(2.0F));
    ValueMarker valuemarker = new ValueMarker(80D);
    valuemarker.setLabelOffsetType(LengthAdjustmentType.EXPAND);
    valuemarker.setPaint(Color.red);
    valuemarker.setStroke(new BasicStroke(2.0F));
    valuemarker.setLabel("Temperature Threshold");
    valuemarker.setLabelFont(new Font("SansSerif", 0, 11));
    valuemarker.setLabelPaint(Color.red);
    valuemarker.setLabelAnchor(RectangleAnchor.TOP_LEFT);
    valuemarker.setLabelTextAnchor(TextAnchor.BOTTOM_LEFT);
    xyplot.addRangeMarker(valuemarker);
    Hour hour = new Hour(18, 30, 6, 2005);
    Hour hour1 = new Hour(20, 30, 6, 2005);
    double d = hour.getFirstMillisecond();
    double d1 = hour1.getFirstMillisecond();
    IntervalMarker intervalmarker = new IntervalMarker(d, d1);
    intervalmarker.setLabelOffsetType(LengthAdjustmentType.EXPAND);
    intervalmarker.setPaint(new Color(150, 150, 255));
    intervalmarker.setLabel("Automatic Cooling");
    intervalmarker.setLabelFont(new Font("SansSerif", 0, 11));
    intervalmarker.setLabelPaint(Color.blue);
    intervalmarker.setLabelAnchor(RectangleAnchor.TOP_LEFT);
    intervalmarker.setLabelTextAnchor(TextAnchor.TOP_RIGHT);
    xyplot.addDomainMarker(intervalmarker, Layer.BACKGROUND);
    ValueMarker valuemarker1 = new ValueMarker(d, Color.blue, new BasicStroke(2.0F));
    ValueMarker valuemarker2 = new ValueMarker(d1, Color.blue, new BasicStroke(2.0F));
    xyplot.addDomainMarker(valuemarker1, Layer.BACKGROUND);
    xyplot.addDomainMarker(valuemarker2, Layer.BACKGROUND);
    return jfreechart;
}

From source file:ec.ui.view.AutoCorrelationsView.java

protected void onDataChange() {
    chartPanel.getChart().setTitle(ACKind.Normal == kind ? "Autocorrelations" : "Partial autocorrelations");
    NumberAxis domainAxis = (NumberAxis) chartPanel.getChart().getXYPlot().getDomainAxis();
    domainAxis.setRange(0, length);//from  ww w  .ja  va 2s. c om
    domainAxis.setTickUnit(new NumberTickUnit(length / 6));

    if (ac == DEFAULT_AUTO_CORRELATIONS) {
        chartPanel.getChart().getXYPlot().setDataset(Charts.emptyXYDataset());
    } else {
        ac.setCorrectedForMean(meanCorrection);
        ac.setKMax(length);

        double[] vals = ACKind.Normal == kind ? ac.getAC() : ac.getPAC();
        XYSeries series = new XYSeries("");
        for (int i = 0; i < vals.length; ++i) {
            series.add(i + 1, vals[i]);
        }

        XYPlot plot = chartPanel.getChart().getXYPlot();
        plot.clearRangeMarkers();
        plot.setDataset(new XYBarDataset(new XYSeriesCollection(series), 1));

        double z = 2.0d / Math
                .sqrt(ac.getUnderlyingData().getDataCount() - ac.getUnderlyingData().getMissingValuesCount());
        for (double o : new double[] { z, -z }) {
            ValueMarker marker = new ValueMarker(o);
            marker.setStroke(MARKER_STROKE);
            marker.setAlpha(MARKER_ALPHA);
            plot.addRangeMarker(marker);
        }

        onColorSchemeChange();
    }
}