Example usage for org.jfree.chart.plot XYPlot addRangeMarker

Introduction

In this page you can find the example usage for org.jfree.chart.plot XYPlot addRangeMarker.

Prototype

public void addRangeMarker(Marker marker) 

Source Link

Document

Adds a marker for the range axis and sends a PlotChangeEvent to all registered listeners.

Usage

From source file:net.liuxuan.device.w3330.JIF_DrawChart_w3330.java

private void chartDrawHerizonLine(W3330MetaData data, Color color, String Labelstr) {
    XYPlot plot = (XYPlot) chartPanel.getChart().getPlot();
    final Marker start = new ValueMarker(data.zero);
    start.setPaint(color);//from   w w  w .ja v  a2s . c  o  m
    start.setLabel(Labelstr);
    start.setLabelAnchor(RectangleAnchor.BOTTOM_LEFT);
    start.setLabelTextAnchor(TextAnchor.TOP_LEFT);
    start.setLabelPaint(color);
    plot.addRangeMarker(start);
}

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From source file:gui.QTLResultsPanel.java

private JPanel getChart(Trait trait) {
    JFreeChart chart = ChartFactory.createXYLineChart(null, "Position (cM)", "LOD Score", null,
            PlotOrientation.VERTICAL, true, true, false);

    setChartData(chart, trait);/*from  w w w.  j  a  v a  2  s.  c  om*/

    RenderingHints rh = new RenderingHints(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_OFF);
    chart.setRenderingHints(rh);
    chart.removeLegend();

    XYPlot plot = chart.getXYPlot();
    plot.setBackgroundPaint(new Color(255, 255, 220));
    plot.setDomainGridlinePaint(new Color(128, 128, 128));
    plot.setRangeGridlinePaint(new Color(128, 128, 128));

    ValueAxis axis = plot.getRangeAxis();
    if (trait.maxLOD <= 3) {
        axis.setUpperBound(3);
    }

    PermResult result = trait.getPermResult();
    if (result != null) {
        float[] dashPattern = { 5, 5 };
        BasicStroke s1 = new BasicStroke(1, BasicStroke.CAP_BUTT, BasicStroke.JOIN_MITER, 10, dashPattern, 0);

        ValueMarker m1 = new ValueMarker(result.getSig90(), new Color(0, 0, 60), s1, null, null, 1.0f);
        ValueMarker m2 = new ValueMarker(result.getSig95(), new Color(0, 0, 60), s1, null, null, 1.0f);

        plot.addRangeMarker(m1);
        plot.addRangeMarker(m2);

        if (result.getSig95() > trait.maxLOD && result.getSig95() >= 3) {
            axis.setUpperBound(result.getSig95() * (1.05));
        }
    }

    chartPanel = new ChartPanel(chart);
    chartPanel.setPopupMenu(null);
    return chartPanel;
}

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From source file:org.jstockchart.plot.TimeseriesPlot.java

private XYPlot createPricePlot() {
    Font axisFont = new Font("Arial", 0, 12);
    Stroke stroke = new BasicStroke(1f, BasicStroke.CAP_BUTT, BasicStroke.CAP_SQUARE, 0.0f,
            new float[] { 1.0f, 1.0f }, 1.0f);
    PriceArea priceArea = timeseriesArea.getPriceArea();
    Color averageColor = new Color(243, 182, 117);
    priceArea.setAverageColor(averageColor);
    priceArea.setPriceColor(Color.BLUE);
    TimeSeriesCollection priceDataset = new TimeSeriesCollection();
    priceDataset.addSeries(dataset.getPriceTimeSeries().getTimeSeries());
    if (priceArea.isAverageVisible()) {
        priceDataset.addSeries(dataset.getAverageTimeSeries().getTimeSeries());
    }/*from ww w  .j av  a2s. co  m*/

    CentralValueAxis logicPriceAxis = priceArea.getLogicPriceAxis();

    logicPriceAxis.setTickCount(7);

    CFXNumberAxis priceAxis = new CFXNumberAxis(logicPriceAxis.getLogicTicks());
    priceAxis.setShowUD(true);
    priceAxis.setOpenPrice(logicPriceAxis.getCentralValue().doubleValue());
    priceAxis.setTickMarksVisible(false);
    XYLineAndShapeRenderer priceRenderer = new XYLineAndShapeRenderer(true, false);
    priceAxis.setUpperBound(logicPriceAxis.getUpperBound());
    priceAxis.setLowerBound(logicPriceAxis.getLowerBound());
    priceAxis.setAxisLineVisible(false);
    priceAxis.setTickLabelFont(axisFont);
    priceRenderer.setSeriesPaint(0, priceArea.getPriceColor());
    priceRenderer.setSeriesPaint(1, priceArea.getAverageColor());

    CFXNumberAxis rateAxis = new CFXNumberAxis(logicPriceAxis.getRatelogicTicks());
    rateAxis.setShowUD(true);
    rateAxis.setOpenPrice(logicPriceAxis.getCentralValue().doubleValue());
    rateAxis.setTickMarksVisible(false);
    ;
    rateAxis.setTickLabelFont(axisFont);
    rateAxis.setAxisLineVisible(false);
    rateAxis.setUpperBound(logicPriceAxis.getUpperBound());
    rateAxis.setLowerBound(logicPriceAxis.getLowerBound());
    XYPlot plot = new XYPlot(priceDataset, null, priceAxis, priceRenderer);
    plot.setBackgroundPaint(priceArea.getBackgroudColor());
    plot.setOrientation(priceArea.getOrientation());
    plot.setRangeAxisLocation(priceArea.getPriceAxisLocation());
    plot.setRangeMinorGridlinesVisible(false);

    Stroke outLineStroke = new BasicStroke(1f, BasicStroke.CAP_BUTT, BasicStroke.CAP_SQUARE, 0.0f,
            new float[] { 1.0f, 1.0f }, 1.0f);
    Stroke gridLineStroke = new BasicStroke(0.5f, BasicStroke.CAP_BUTT, BasicStroke.JOIN_BEVEL, 0.0f,
            new float[] { 2.0f, 2.0f }, 1.0f);

    plot.setRangeGridlineStroke(gridLineStroke);
    plot.setDomainGridlineStroke(gridLineStroke);
    plot.setRangeGridlinesVisible(true);
    plot.setDomainGridlinesVisible(true);
    plot.setOutlineVisible(true);
    plot.setOutlineStroke(outLineStroke);
    plot.setOutlinePaint(Color.BLACK);

    if (priceArea.isRateVisible()) {
        plot.setRangeAxis(1, rateAxis);
        plot.setRangeAxisLocation(1, priceArea.getRateAxisLocation());
        plot.setDataset(1, null);
        plot.mapDatasetToRangeAxis(1, 1);
    }

    if (priceArea.isMarkCentralValue()) {
        Number centralPrice = logicPriceAxis.getCentralValue();
        if (centralPrice != null) {
            plot.addRangeMarker(new ValueMarker(centralPrice.doubleValue(), priceArea.getCentralPriceColor(),
                    new BasicStroke()));
        }
    }
    return plot;
}

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From source file:org.trade.ui.chart.CandlestickChart.java

/**
 * Method seriesChanged.//  ww  w .j  a v a2 s.co m
 * 
 * @param event
 *            SeriesChangeEvent
 * @see org.jfree.data.general.SeriesChangeListener#seriesChanged(SeriesChangeEvent)
 */
public void seriesChanged(SeriesChangeEvent event) {

    Object series = event.getSource();
    if (series instanceof CandleSeries) {

        CandleSeries candleSeries = (CandleSeries) series;
        if (!candleSeries.isEmpty()) {
            CombinedDomainXYPlot combinedXYplot = (CombinedDomainXYPlot) this.chart.getPlot();
            @SuppressWarnings("unchecked")
            List<XYPlot> subplots = combinedXYplot.getSubplots();
            XYPlot xyplot = subplots.get(0);

            CandleItem candleItem = (CandleItem) candleSeries.getDataItem(candleSeries.getItemCount() - 1);
            String msg = "Time: " + dateFormat.format(candleItem.getLastUpdateDate()) + " Open: "
                    + new Money(candleItem.getOpen()) + " High: " + new Money(candleItem.getHigh()) + " Low: "
                    + new Money(candleItem.getLow()) + " Close: " + new Money(candleItem.getClose()) + " Vwap: "
                    + new Money(candleItem.getVwap());
            titleLegend2.setText(msg);
            valueMarker.setValue(candleItem.getClose());

            double x = TradingCalendar
                    .getSpecificTime(candleSeries.getStartTime(), candleItem.getPeriod().getStart()).getTime();
            String annotationText = "(" + dateFormat.format(candleItem.getLastUpdateDate()) + ", "
                    + new Money(candleItem.getClose()) + ")";
            if (null == closePriceLine) {
                closePriceLine = new XYTextAnnotation(annotationText, x, candleItem.getY());
                closePriceLine.setTextAnchor(TextAnchor.BOTTOM_RIGHT);
                xyplot.addAnnotation(closePriceLine);
                xyplot.addRangeMarker(valueMarker);
            } else {
                closePriceLine.setText(annotationText);
                closePriceLine.setX(x);
                closePriceLine.setY(candleItem.getY());
            }

            this.chart.fireChartChanged();
        }
    }
}

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From source file:sanger.team16.gui.genevar.eqtl.gene.RegionalPlot.java

private JFreeChart createChart(String geneChromosome, int geneStart, int distanceToTSS, double threshold,
        XYDataset dataset) {/* w w w.j  a  v  a2 s  . c  om*/
    JFreeChart chart = ChartFactory.createScatterPlot(null,
            "Position on chromosome " + geneChromosome + " (bp)", "-log10(P)", dataset,
            PlotOrientation.VERTICAL, true, true, false);

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setBackgroundPaint(Color.WHITE);
    plot.setDomainGridlinePaint(Color.lightGray);
    //plot.setRangeGridlinePaint(Color.lightGray);
    //plot.setRangeCrosshairVisible(true);

    //NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis();
    //domainAxis.setRange(geneStart - distance, geneStart + distance);       
    //domainAxis.setUpperMargin(1000);
    //domainAxis.setLowerMargin(1000);

    //ValueAxis rangeAxis = plot.getRangeAxis();
    //rangeAxis.setUpperMargin(dataset.getYValue(0, 0)/5);
    //rangeAxis.setLowerBound(0);

    XYItemRenderer renderer = plot.getRenderer();
    int size = dataset.getSeriesCount();
    for (int i = 0; i < size; i++) {
        //int scale = (int) Math.round((255 - (255 * dataset.getYValue(i, 0)) / top) / 1.4);
        //renderer.setSeriesPaint(i, new Color(255, scale, scale));

        renderer.setSeriesPaint(i, new Color(255, 0, 0));
        renderer.setSeriesShape(i, ShapeUtilities.createDiamond((float) 3));
        renderer.setBaseSeriesVisibleInLegend(false);
    }

    ValueMarker upperMarker = new ValueMarker(-Math.log10(threshold));
    upperMarker.setPaint(Color.gray);
    //upperMarker.setLabelOffsetType(LengthAdjustmentType.EXPAND);        
    //upperMarker.setLabel("-log10(10E-4)");
    //upperMarker.setLabelPaint(Color.red);
    //upperMarker.setLabelAnchor(RectangleAnchor.TOP_RIGHT);
    //upperMarker.setLabelTextAnchor(TextAnchor.BOTTOM_RIGHT);
    float[] f = { 4, 3, 4, 3 };
    upperMarker.setStroke(new BasicStroke(1.0f, 1, 1, 0, f, 1.0f));
    plot.addRangeMarker(upperMarker);

    ValueMarker marker = new ValueMarker(0.0);
    marker.setPaint(Color.lightGray);
    plot.addRangeMarker(marker);

    XYSeries series = new XYSeries("Range");
    series.add(geneStart - distanceToTSS, -0.05);
    series.add(geneStart + distanceToTSS, -0.05);
    ((XYSeriesCollection) dataset).addSeries(series);
    renderer.setSeriesVisible(dataset.getSeriesCount() - 1, false, false);

    return chart;
}

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From source file:sanger.team16.gui.genevar.mqtl.gene.RegionalPlot.java

private JFreeChart createChart(String geneChromosome, int geneStart, int distanceToTSS, double threshold,
        XYDataset dataset) {//from  ww  w.j  a va 2  s. c om
    JFreeChart chart = ChartFactory.createScatterPlot(null,
            "Position on chromosome " + geneChromosome + " (bp)", "-log10(P)", dataset,
            PlotOrientation.VERTICAL, true, true, false);

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setBackgroundPaint(Color.WHITE);
    plot.setDomainGridlinePaint(Color.lightGray);
    //plot.setRangeGridlinePaint(Color.lightGray);
    //plot.setRangeCrosshairVisible(true);

    //NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis();
    //domainAxis.setRange(geneStart - distance, geneStart + distance);       
    //domainAxis.setUpperMargin(1000);
    //domainAxis.setLowerMargin(1000);

    //ValueAxis rangeAxis = plot.getRangeAxis();
    //rangeAxis.setUpperMargin(dataset.getYValue(0, 0)/5);
    //rangeAxis.setLowerBound(0);

    XYItemRenderer renderer = plot.getRenderer();
    int size = dataset.getSeriesCount();
    for (int i = 0; i < size; i++) {
        //int scale = (int) Math.round((255 - (255 * dataset.getYValue(i, 0)) / top) / 1.4);
        //renderer.setSeriesPaint(i, new Color(255, scale, scale));

        renderer.setSeriesPaint(i, new Color(50, 205, 50));
        renderer.setSeriesShape(i, ShapeUtilities.createDiamond((float) 3));
        renderer.setBaseSeriesVisibleInLegend(false);
    }

    ValueMarker upperMarker = new ValueMarker(-Math.log10(threshold));
    upperMarker.setPaint(Color.gray);
    //upperMarker.setLabelOffsetType(LengthAdjustmentType.EXPAND);        
    //upperMarker.setLabel("-log10(10E-4)");
    //upperMarker.setLabelPaint(Color.red);
    //upperMarker.setLabelAnchor(RectangleAnchor.TOP_RIGHT);
    //upperMarker.setLabelTextAnchor(TextAnchor.BOTTOM_RIGHT);
    float[] f = { 4, 3, 4, 3 };
    upperMarker.setStroke(new BasicStroke(1.0f, 1, 1, 0, f, 1.0f));
    plot.addRangeMarker(upperMarker);

    ValueMarker marker = new ValueMarker(0.0);
    marker.setPaint(Color.lightGray);
    plot.addRangeMarker(marker);

    XYSeries series = new XYSeries("Range");
    series.add(geneStart - distanceToTSS, -0.05);
    series.add(geneStart + distanceToTSS, -0.05);
    ((XYSeriesCollection) dataset).addSeries(series);
    renderer.setSeriesVisible(dataset.getSeriesCount() - 1, false, false);

    return chart;
}

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From source file:com.android.ddmuilib.net.NetworkPanel.java

/**
 * Create chart of recent network activity.
 *///from  w w  w  . j  ava 2  s .  com
private void createChart() {

    mChart = ChartFactory.createTimeSeriesChart(null, null, null, null, false, false, false);

    // create backing datasets and series
    mRxTotalSeries = new TimeSeries("RX total");
    mTxTotalSeries = new TimeSeries("TX total");

    mRxTotalSeries.setMaximumItemAge(HISTORY_MILLIS);
    mTxTotalSeries.setMaximumItemAge(HISTORY_MILLIS);

    mTotalCollection = new TimeSeriesCollection();
    mTotalCollection.addSeries(mRxTotalSeries);
    mTotalCollection.addSeries(mTxTotalSeries);

    mRxDetailDataset = new LiveTimeTableXYDataset();
    mTxDetailDataset = new LiveTimeTableXYDataset();

    mTotalRenderer = new XYAreaRenderer(XYAreaRenderer.AREA);
    mRenderer = new StackedXYAreaRenderer2();

    final XYPlot xyPlot = mChart.getXYPlot();

    xyPlot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);

    xyPlot.setDataset(0, mTotalCollection);
    xyPlot.setDataset(1, mRxDetailDataset);
    xyPlot.setDataset(2, mTxDetailDataset);
    xyPlot.setRenderer(0, mTotalRenderer);
    xyPlot.setRenderer(1, mRenderer);
    xyPlot.setRenderer(2, mRenderer);

    // we control domain axis manually when taking samples
    mDomainAxis = xyPlot.getDomainAxis();
    mDomainAxis.setAutoRange(false);

    final NumberAxis axis = new NumberAxis();
    axis.setNumberFormatOverride(new BytesFormat(true));
    axis.setAutoRangeMinimumSize(50);
    xyPlot.setRangeAxis(axis);
    xyPlot.setRangeAxisLocation(AxisLocation.BOTTOM_OR_RIGHT);

    // draw thick line to separate RX versus TX traffic
    xyPlot.addRangeMarker(new ValueMarker(0, java.awt.Color.BLACK, new java.awt.BasicStroke(2)));

    // label to indicate that positive axis is RX traffic
    final ValueMarker rxMarker = new ValueMarker(0);
    rxMarker.setStroke(new java.awt.BasicStroke(0));
    rxMarker.setLabel("RX");
    rxMarker.setLabelFont(rxMarker.getLabelFont().deriveFont(30f));
    rxMarker.setLabelPaint(java.awt.Color.LIGHT_GRAY);
    rxMarker.setLabelAnchor(RectangleAnchor.TOP_RIGHT);
    rxMarker.setLabelTextAnchor(TextAnchor.BOTTOM_RIGHT);
    xyPlot.addRangeMarker(rxMarker);

    // label to indicate that negative axis is TX traffic
    final ValueMarker txMarker = new ValueMarker(0);
    txMarker.setStroke(new java.awt.BasicStroke(0));
    txMarker.setLabel("TX");
    txMarker.setLabelFont(txMarker.getLabelFont().deriveFont(30f));
    txMarker.setLabelPaint(java.awt.Color.LIGHT_GRAY);
    txMarker.setLabelAnchor(RectangleAnchor.BOTTOM_RIGHT);
    txMarker.setLabelTextAnchor(TextAnchor.TOP_RIGHT);
    xyPlot.addRangeMarker(txMarker);

    mChartComposite = new ChartComposite(mPanel, SWT.BORDER, mChart, ChartComposite.DEFAULT_WIDTH,
            ChartComposite.DEFAULT_HEIGHT, ChartComposite.DEFAULT_MINIMUM_DRAW_WIDTH,
            ChartComposite.DEFAULT_MINIMUM_DRAW_HEIGHT, 4096, 4096, true, true, true, true, false, true);

    final FormData data = new FormData();
    data.top = new FormAttachment(mHeader);
    data.left = new FormAttachment(0);
    data.bottom = new FormAttachment(70);
    data.right = new FormAttachment(100);
    mChartComposite.setLayoutData(data);
}

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From source file:com.jtstand.swing.StatsPanel.java

public void placeLimitMarkers(XYPlot plot, boolean range) {
    if (testStepInstances.getReferenceStep() != null
            && testStepInstances.getReferenceStep().getTestLimit() != null) {
        if (testStepInstances.getReferenceStep().getTestLimit().getLowerSpecifiedLimit() != null) {
            final Marker lsl = new ValueMarker(
                    testStepInstances.getReferenceStep().getTestLimit().getLowerSpecifiedLimit());
            lsl.setPaint(limitcolor);/*w w w. ja v  a2  s.c om*/
            lsl.setLabel("LSL");
            if (range) {
                lsl.setLabelAnchor(RectangleAnchor.BOTTOM_RIGHT);
                lsl.setLabelTextAnchor(TextAnchor.TOP_RIGHT);
                plot.addRangeMarker(lsl);
            } else {
                lsl.setLabelAnchor(RectangleAnchor.TOP_LEFT);
                lsl.setLabelTextAnchor(TextAnchor.TOP_RIGHT);
                plot.addDomainMarker(lsl);
            }

        }
        if (testStepInstances.getReferenceStep().getTestLimit().getUpperSpeficiedLimit() != null) {
            final Marker usl = new ValueMarker(
                    testStepInstances.getReferenceStep().getTestLimit().getUpperSpeficiedLimit());
            usl.setPaint(limitcolor);
            usl.setLabel("USL");
            if (range) {
                usl.setLabelAnchor(RectangleAnchor.TOP_RIGHT);
                usl.setLabelTextAnchor(TextAnchor.BOTTOM_RIGHT);
                plot.addRangeMarker(usl);
            } else {
                usl.setLabelAnchor(RectangleAnchor.TOP_RIGHT);
                usl.setLabelTextAnchor(TextAnchor.TOP_LEFT);
                plot.addDomainMarker(usl);
            }
        }
    }
}

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From source file:com.appnativa.rare.ui.chart.jfreechart.ChartHandler.java

protected void updateMarkers(ChartDefinition cd, XYPlot plot, boolean range) {
    List<ChartDataItem> markers = range ? cd.getRangeMarkers() : cd.getDomainMarkers();
    int len = (markers == null) ? 0 : markers.size();

    len = (markers == null) ? 0 : markers.size();

    if (range) {/* ww  w  .  j a va2  s  .co  m*/
        plot.clearRangeMarkers();

        for (int i = 0; i < len; i++) {
            plot.addRangeMarker(ChartHelper.createIntervalMarker(markers.get(i)));
        }
    } else {
        plot.clearDomainMarkers();

        IntervalMarker marker;
        ChartAxis.TimeUnit tm = cd.getDomainAxis().getTimeUnit();
        boolean time = cd.isDateTimeType();

        customizeAxis(cd, cd.getRangeAxis(), (NumberAxis) plot.getRangeAxis());
        customizeAxis(cd, cd.getDomainAxis(), (NumberAxis) plot.getDomainAxis());

        for (int i = 0; i < len; i++) {
            marker = time ? ChartHelper.createIntervalMarker(markers.get(i), tm)
                    : ChartHelper.createIntervalMarker(markers.get(i));
            plot.addDomainMarker(marker);
        }
    }
}

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From source file:org.gwaspi.gui.reports.ManhattanPlotZoom.java

private JFreeChart createChart(XYDataset dataset, ChromosomeKey chr) {
    JFreeChart chart = ChartFactory.createScatterPlot(null, "", "P value", dataset, PlotOrientation.VERTICAL,
            true, false, false);//  w w w.ja  va  2 s .  c  o m

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setNoDataMessage("NO DATA");
    plot.setDomainZeroBaselineVisible(true);
    plot.setRangeZeroBaselineVisible(true);

    // CHART BACKGROUD COLOR
    chart.setBackgroundPaint(Color.getHSBColor(0.1f, 0.1f, 1.0f)); // Hue, saturation, brightness
    plot.setBackgroundPaint(manhattan_back); // Hue, saturation, brightness 9

    // GRIDLINES
    plot.setDomainGridlineStroke(new BasicStroke(0.0f));
    plot.setDomainMinorGridlineStroke(new BasicStroke(0.0f));
    plot.setDomainGridlinePaint(manhattan_back.darker().darker()); // Hue, saturation, brightness 7
    plot.setDomainMinorGridlinePaint(manhattan_back); // Hue, saturation, brightness 9
    plot.setRangeGridlineStroke(new BasicStroke(0.0f));
    plot.setRangeMinorGridlineStroke(new BasicStroke(0.0f));
    plot.setRangeGridlinePaint(manhattan_back.darker().darker()); // Hue, saturation, brightness 7
    plot.setRangeMinorGridlinePaint(manhattan_back.darker()); // Hue, saturation, brightness 8

    plot.setDomainMinorGridlinesVisible(true);
    plot.setRangeMinorGridlinesVisible(true);

    // DOTS RENDERER
    XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer();
    renderer.setSeriesPaint(0, manhattan_dot);
    //      renderer.setSeriesOutlinePaint(0, Color.DARK_GRAY);
    //      renderer.setUseOutlinePaint(true);
    // Set dot shape of the currently appended Series
    renderer.setSeriesShape(0, new Rectangle2D.Double(0.0, 0.0, 2, 2));

    renderer.setSeriesVisibleInLegend(0, false);

    NumberAxis positionAxis = (NumberAxis) plot.getDomainAxis();
    //      domainAxis.setAutoRangeIncludesZero(false);
    //      domainAxis.setTickMarkInsideLength(2.0f);
    //      domainAxis.setTickMarkOutsideLength(2.0f);
    //      domainAxis.setMinorTickCount(2);
    //      domainAxis.setMinorTickMarksVisible(true);
    positionAxis.setLabelAngle(1.0);
    positionAxis.setAutoRangeIncludesZero(false);
    positionAxis.setAxisLineVisible(true);
    positionAxis.setTickLabelsVisible(true);
    positionAxis.setTickMarksVisible(true);

    // ADD INVERSE LOG(10) Y AXIS
    LogAxis logPAxis = new LogAxis("P value");
    logPAxis.setBase(10);
    logPAxis.setInverted(true);
    logPAxis.setNumberFormatOverride(GenericReportGenerator.FORMAT_P_VALUE);

    logPAxis.setTickMarkOutsideLength(2.0f);
    logPAxis.setMinorTickCount(2);
    logPAxis.setMinorTickMarksVisible(true);
    logPAxis.setAxisLineVisible(true);
    logPAxis.setUpperMargin(0);

    TickUnitSource units = NumberAxis.createIntegerTickUnits();
    logPAxis.setStandardTickUnits(units);
    plot.setRangeAxis(0, logPAxis);

    // Add significance Threshold to subplot
    //threshold = 0.5/rdMatrixMetadata.getMarkerSetSize();  // (0.05/10? SNPs => 5*10-?)
    final Marker thresholdLine = new ValueMarker(threshold);
    thresholdLine.setPaint(Color.red);
    // Add legend to threshold
    thresholdLine.setLabel("P = " + GenericReportGenerator.FORMAT_P_VALUE.format(threshold));
    thresholdLine.setLabelAnchor(RectangleAnchor.TOP_RIGHT);
    thresholdLine.setLabelTextAnchor(TextAnchor.BOTTOM_RIGHT);
    plot.addRangeMarker(thresholdLine);

    // Marker label if below threshold
    XYItemRenderer lblRenderer = plot.getRenderer();

    // THRESHOLD AND SELECTED LABEL GENERATOR
    MySeriesItemLabelGenerator lblGenerator = new MySeriesItemLabelGenerator(threshold, chr);
    lblRenderer.setSeriesItemLabelGenerator(0, lblGenerator);
    lblRenderer.setSeriesItemLabelFont(0, new Font("SansSerif", Font.PLAIN, 12));
    lblRenderer.setSeriesPositiveItemLabelPosition(0, new ItemLabelPosition(ItemLabelAnchor.CENTER,
            TextAnchor.TOP_LEFT, TextAnchor.BOTTOM_LEFT, Math.PI / 4.0));

    // TOOLTIP GENERATOR
    MyXYToolTipGenerator tooltipGenerator = new MyXYToolTipGenerator(chr);

    lblRenderer.setBaseToolTipGenerator(tooltipGenerator);

    lblRenderer.setSeriesItemLabelsVisible(0, true);

    return chart;
}

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