List of usage examples for org.jfree.chart.renderer.xy XYBlockRenderer XYBlockRenderer
public XYBlockRenderer()
XYBlockRenderer instance with default attributes. From source file:maltcms.ui.fileHandles.csv.CSV2JFCLoader.java
@Override public void run() { CSV2TableLoader tl = new CSV2TableLoader(this.ph, this.is); DefaultTableModel dtm;//from w ww .j a va 2 s. co m try { dtm = tl.call(); if (this.mode == CHART.XY) { XYSeriesCollection cd = new XYSeriesCollection(); for (int j = 0; j < dtm.getColumnCount(); j++) { XYSeries xys = new XYSeries(dtm.getColumnName(j)); for (int i = 0; i < dtm.getRowCount(); i++) { Object o = dtm.getValueAt(i, j); try { double d = Double.parseDouble(o.toString()); xys.add(i, d); Logger.getLogger(getClass().getName()).log(Level.INFO, "Adding {0} {1} {2}", new Object[] { i, d, dtm.getColumnName(j) }); } catch (Exception e) { } } cd.addSeries(xys); } XYLineAndShapeRenderer d = new XYLineAndShapeRenderer(true, false); XYPlot xyp = new XYPlot(cd, new NumberAxis("category"), new NumberAxis("value"), d); JFreeChart jfc = new JFreeChart(this.title, xyp); jtc.setChart(jfc); Logger.getLogger(getClass().getName()).info("creating chart done"); } else if (this.mode == CHART.MATRIX) { DefaultXYZDataset cd = new DefaultXYZDataset(); Logger.getLogger(getClass().getName()).log(Level.INFO, "Name of column 0: {0}", dtm.getColumnName(0)); if (dtm.getColumnName(0).isEmpty()) { Logger.getLogger(getClass().getName()).info("Removing column 0"); dtm = removeColumn(dtm, 0); } if (dtm.getColumnName(dtm.getColumnCount() - 1).equalsIgnoreCase("filename")) { dtm = removeColumn(dtm, dtm.getColumnCount() - 1); } StringBuilder sb = new StringBuilder(); for (int i = 0; i < dtm.getRowCount(); i++) { for (int j = 0; j < dtm.getColumnCount(); j++) { sb.append(dtm.getValueAt(i, j) + " "); } sb.append("\n"); } Logger.getLogger(getClass().getName()).log(Level.INFO, "Table before sorting: {0}", sb.toString()); // dtm = sort(dtm); StringBuilder sb2 = new StringBuilder(); for (int i = 0; i < dtm.getRowCount(); i++) { for (int j = 0; j < dtm.getColumnCount(); j++) { sb2.append(dtm.getValueAt(i, j) + " "); } sb2.append("\n"); } Logger.getLogger(getClass().getName()).log(Level.INFO, "Table after sorting: {0}", sb2.toString()); int rows = dtm.getRowCount(); int columns = dtm.getColumnCount(); Logger.getLogger(getClass().getName()).log(Level.INFO, "Storing {0} * {1} elements, {2} total!", new Object[] { columns, rows, rows * columns }); double[][] data = new double[3][(columns * rows)]; ArrayDouble.D1 dt = new ArrayDouble.D1((columns) * rows); double min = Double.POSITIVE_INFINITY; double max = Double.NEGATIVE_INFINITY; EvalTools.eqI(rows, columns, this); int k = 0; for (int i = 0; i < dtm.getRowCount(); i++) { for (int j = 0; j < dtm.getColumnCount(); j++) { Object o = dtm.getValueAt(i, j); try { double d = Double.parseDouble(o.toString()); if (d < min) { min = d; } if (d > max) { max = d; } data[0][k] = (double) i; data[1][k] = (double) j; data[2][k] = d; dt.set(k, d); k++; //System.out.println("Adding "+i+" "+d+" "+dtm.getColumnName(j)); } catch (Exception e) { } } //cd.addSeries(xys); } cd.addSeries(this.title, data); XYBlockRenderer xyb = new XYBlockRenderer(); GradientPaintScale ps = new GradientPaintScale(ImageTools.createSampleTable(256), min, max, ImageTools .rampToColorArray(new ColorRampReader().readColorRamp("res/colorRamps/bcgyr.csv"))); xyb.setPaintScale(ps); final String[] colnames = new String[dtm.getColumnCount()]; for (int i = 0; i < colnames.length; i++) { colnames[i] = dtm.getColumnName(i); } NumberAxis na1 = new SymbolAxis("category", colnames); na1.setVerticalTickLabels(false); NumberAxis na2 = new SymbolAxis("category", colnames); na1.setVerticalTickLabels(true); XYPlot xyp = new XYPlot(cd, na1, na2, xyb); xyb.setSeriesToolTipGenerator(0, new XYToolTipGenerator() { @Override public String generateToolTip(XYDataset xyd, int i, int i1) { return "[" + colnames[xyd.getX(i, i1).intValue()] + ":" + colnames[xyd.getY(i, i1).intValue()] + "] = " + ((XYZDataset) xyd).getZValue(i, i1) + ""; } }); JFreeChart jfc = new JFreeChart(this.title, xyp); NumberAxis values = new NumberAxis("value"); values.setAutoRange(false); values.setRangeWithMargins(min, max); PaintScaleLegend psl = new PaintScaleLegend(ps, values); psl.setBackgroundPaint(jfc.getBackgroundPaint()); jfc.addSubtitle(psl); psl.setStripWidth(50); psl.setPadding(20, 20, 20, 20); psl.setHeight(200); psl.setPosition(RectangleEdge.RIGHT); jtc.setChart(jfc); } } catch (Exception ex) { Exceptions.printStackTrace(ex); } ph.finish(); }
From source file:org.jls.toolbox.math.chart.XYBlockChart.java
/** * Permet de crer le graphique partir des paramtres spcifis. *//*from w w w . j a va 2 s. com*/ private void createChart() { // Cration des axes NumberAxis xAxis = new NumberAxis(this.xTitle); xAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); xAxis.setLabelFont(new Font("Dialog", Font.BOLD, 14)); xAxis.setLowerMargin(0.0); xAxis.setUpperMargin(0.0); NumberAxis yAxis = new NumberAxis(this.yTitle); yAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); yAxis.setLabelFont(new Font("Dialog", Font.BOLD, 14)); yAxis.setLowerMargin(0.0); yAxis.setUpperMargin(0.0); this.renderer = new XYBlockRenderer(); PaintScale scale = new GrayPaintScale(0, 10); this.renderer.setPaintScale(scale); // Cration de la courbe this.plot = new XYPlot(this.dataset, xAxis, yAxis, this.renderer); // Cration du graphique this.chart = new JFreeChart(this.title, this.plot); this.chart.removeLegend(); createPaintScaleLegend(scale); setColorGradient(Color.yellow, Color.red, 0, 1); }
From source file:it.eng.spagobi.engines.chart.bo.charttypes.XYCharts.BlockChart.java
/** * Creates a chart for the specified dataset. * //www . j ava 2s . c o m * @param dataset the dataset. * * @return A chart instance. */ public JFreeChart createChart(DatasetMap datasets) { XYZDataset dataset = (XYZDataset) datasets.getDatasets().get("1"); //Creates the xAxis with its label and style NumberAxis xAxis = new NumberAxis(xLabel); xAxis.setLowerMargin(0.0); xAxis.setUpperMargin(0.0); xAxis.setLabel(xLabel); if (addLabelsStyle != null && addLabelsStyle.getFont() != null) { xAxis.setLabelFont(addLabelsStyle.getFont()); xAxis.setLabelPaint(addLabelsStyle.getColor()); } //Creates the yAxis with its label and style NumberAxis yAxis = new NumberAxis(yLabel); yAxis.setAutoRangeIncludesZero(false); yAxis.setInverted(false); yAxis.setLowerMargin(0.0); yAxis.setUpperMargin(0.0); yAxis.setTickLabelsVisible(true); yAxis.setLabel(yLabel); if (addLabelsStyle != null && addLabelsStyle.getFont() != null) { yAxis.setLabelFont(addLabelsStyle.getFont()); yAxis.setLabelPaint(addLabelsStyle.getColor()); } yAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); Color outboundCol = new Color(Integer.decode(outboundColor).intValue()); //Sets the graph paint scale and the legend paintscale LookupPaintScale paintScale = new LookupPaintScale(zvalues[0], (new Double(zrangeMax)).doubleValue(), outboundCol); LookupPaintScale legendPaintScale = new LookupPaintScale(0.5, 0.5 + zvalues.length, outboundCol); for (int ke = 0; ke <= (zvalues.length - 1); ke++) { Double key = (new Double(zvalues[ke])); Color temp = (Color) colorRangeMap.get(key); paintScale.add(zvalues[ke], temp); legendPaintScale.add(0.5 + ke, temp); } //Configures the renderer XYBlockRenderer renderer = new XYBlockRenderer(); renderer.setPaintScale(paintScale); double blockHeight = (new Double(blockH)).doubleValue(); double blockWidth = (new Double(blockW)).doubleValue(); renderer.setBlockWidth(blockWidth); renderer.setBlockHeight(blockHeight); //configures the plot with title, subtitle, axis ecc. XYPlot plot = new XYPlot(dataset, xAxis, yAxis, renderer); plot.setBackgroundPaint(Color.white); plot.setDomainGridlinePaint(Color.black); plot.setRangeGridlinePaint(Color.black); plot.setDomainCrosshairPaint(Color.black); plot.setForegroundAlpha(0.66f); plot.setAxisOffset(new RectangleInsets(5, 5, 5, 5)); JFreeChart chart = new JFreeChart(plot); TextTitle title = setStyleTitle(name, styleTitle); chart.setTitle(title); if (subName != null && !subName.equals("")) { TextTitle subTitle = setStyleTitle(subName, styleSubTitle); chart.addSubtitle(subTitle); } chart.removeLegend(); chart.setBackgroundPaint(Color.white); //Sets legend labels SymbolAxis scaleAxis = new SymbolAxis(null, legendLabels); scaleAxis.setRange(0.5, 0.5 + zvalues.length); scaleAxis.setPlot(new PiePlot()); scaleAxis.setGridBandsVisible(false); scaleAxis.setLabel(zLabel); //scaleAxis.setLabelAngle(3.14/2); scaleAxis.setLabelFont(addLabelsStyle.getFont()); scaleAxis.setLabelPaint(addLabelsStyle.getColor()); //draws legend as chart subtitle PaintScaleLegend psl = new PaintScaleLegend(legendPaintScale, scaleAxis); psl.setAxisOffset(2.0); psl.setPosition(RectangleEdge.RIGHT); psl.setMargin(new RectangleInsets(5, 1, 5, 1)); chart.addSubtitle(psl); if (yLabels != null) { //Sets y legend labels LookupPaintScale legendPaintScale2 = new LookupPaintScale(0, (yLabels.length - 1), Color.white); for (int ke = 0; ke < yLabels.length; ke++) { Color temp = Color.white; legendPaintScale2.add(1 + ke, temp); } SymbolAxis scaleAxis2 = new SymbolAxis(null, yLabels); scaleAxis2.setRange(0, (yLabels.length - 1)); scaleAxis2.setPlot(new PiePlot()); scaleAxis2.setGridBandsVisible(false); //draws legend as chart subtitle PaintScaleLegend psl2 = new PaintScaleLegend(legendPaintScale2, scaleAxis2); psl2.setAxisOffset(5.0); psl2.setPosition(RectangleEdge.LEFT); psl2.setMargin(new RectangleInsets(8, 1, 40, 1)); psl2.setStripWidth(0); psl2.setStripOutlineVisible(false); chart.addSubtitle(psl2); } return chart; }
From source file:org.fhcrc.cpl.toolbox.gui.chart.PanelWithHeatMap.java
public void setData(double[] xValues, double[] yValues, double[][] zValues) { this.xValues = xValues; this.yValues = yValues; this.zValues = zValues; double minZValue = Double.MAX_VALUE; double maxZValue = Double.MIN_VALUE; int width = xValues.length; int height = yValues.length; int numCells = width * height; _log.debug("Number of cells in heat map: " + numCells); if (zValues.length != width || zValues[0].length != height) throw new RuntimeException( "PanelWithHeatMap: wrong number of z values for x and y values (" + zValues.length + " vs. " + width + ", " + zValues[0].length + " vs. " + height + ", x/y first, z second)"); DefaultXYZDataset theDataset = new DefaultXYZDataset(); double[][] data = new double[3][numCells]; for (int j = 0; j < height; j++) { for (int i = 0; i < width; i++) { int cellIndex = (j * width) + i; data[0][cellIndex] = xValues[i]; data[1][cellIndex] = yValues[j]; data[2][cellIndex] = zValues[i][j]; //keep track of lowest/highest z values minZValue = Math.min(zValues[i][j], minZValue); maxZValue = Math.max(zValues[i][j], maxZValue); }// w w w . j ava 2 s . c o m } lowerZBound = Rounder.round(minZValue, 3); upperZBound = Rounder.round(maxZValue, 3); if (lowerZBound == upperZBound) upperZBound += .0001; _log.debug("low,high values: " + lowerZBound + ", " + upperZBound); theDataset.addSeries("Range: " + lowerZBound + "-" + upperZBound, data); dataset = theDataset; if (renderer == null) { renderer = new XYBlockRenderer(); } if (paintScale == null) { setPaintScale(createPaintScale(palette)); } //This is necessary to get everything to line up renderer.setBlockAnchor(RectangleAnchor.BOTTOM); if (getPlot() != null) { ((XYPlot) getPlot()).setDataset(dataset); ((XYPlot) getPlot()).setRenderer(renderer); invalidate(); return; } XYPlot plot = new XYPlot(dataset, xAxis, yAxis, renderer); JFreeChart chart = new JFreeChart(dataSetName, JFreeChart.DEFAULT_TITLE_FONT, plot, true); // chart.addLegend(new LegendTitle(renderer)); // PaintScaleLegend legend = new PaintScaleLegend(paintScale, xAxis); // chart.addLegend(legend); // LegendItemCollection c1 = new LegendItemCollection(); // // LegendItem item1 = new LegendItem("Label", "Description", // "ToolTip", "URL", true, // new Rectangle2D.Double(1.0, 2.0, 3.0, 4.0), true, Color.red, // true, Color.blue, new BasicStroke(1.2f), true, // new Line2D.Double(1.0, 2.0, 3.0, 4.0), // new BasicStroke(2.1f), Color.green); // LegendItem item2 = new LegendItem("Label", "Description", // "ToolTip", "URL", true, // new Rectangle2D.Double(1.0, 2.0, 3.0, 4.0), // true, Color.red, true, Color.blue, new BasicStroke(1.2f), true, // new Line2D.Double(1.0, 2.0, 3.0, 4.0), new BasicStroke(2.1f), // Color.green); // c1.add(item1); // // chart.getLegend().setSources(new LegendItemSource[]{renderer}); init(chart); }
From source file:net.sf.maltcms.chromaui.charts.Chromatogram1DChartProvider.java
/** * * @param fragments/* w ww . j ava2 s . com*/ * @param ticvar * @param useRT * @return */ public XYPlot provide1DCoPlot(List<IFileFragment> fragments, String ticvar, boolean useRT) { final String satVar = "scan_acquisition_time"; DefaultXYZDataset cd = new DefaultXYZDataset(); int rowIdx = 0; double min = 0; double max = 1; double minRT = Double.POSITIVE_INFINITY; double maxRT = Double.NEGATIVE_INFINITY; int y = 0; for (IFileFragment f : fragments) { double[] domainValues = null; if (useRT) { domainValues = (double[]) f.getChild(satVar).getArray().get1DJavaArray(double.class); } else { domainValues = (double[]) f.getChild("scan_index").getArray().get1DJavaArray(double.class); } double[] tic = (double[]) f.getChild(ticvar).getArray().get1DJavaArray(double.class); double maxtic = MathTools.max(tic); double mintic = MathTools.min(tic); double[][] values = new double[3][tic.length]; for (int i = 0; i < tic.length; i++) { values[0][i] = domainValues[i]; values[1][i] = y; values[2][i] = Math.sqrt((tic[i] - mintic) / (maxtic - mintic)); } y++; cd.addSeries(f.getName(), values); } // ArrayDouble.D1 a = new ArrayDouble.D1(npoints); // int offset = 0; // for (IFileFragment f : t) { // Array tic = f.getChild(ticvar).getArray(); // int len = tic.getShape()[0]; // Array.arraycopy(tic, 0, a, offset, len); // offset += len; // } // histogram with fixed binsize // fill intensities into adequate bin, raise count in bin by one // afterwards, relative frequency within a bin gives a normalization // coefficient XYBlockRenderer xyb = new XYBlockRenderer(); GradientPaintScale ps = new GradientPaintScale(ImageTools.createSampleTable(256), min, max, ImageTools.rampToColorArray(new ColorRampReader().readColorRamp("res/colorRamps/bcgyr.csv"))); xyb.setPaintScale(ps); final String[] colnames = new String[fragments.size()]; for (int i = 0; i < colnames.length; i++) { colnames[i] = StringTools.removeFileExt(fragments.get(i).getName()); } NumberAxis na = null; if (useRT) { na = new NumberAxis("time [s]"); na.setAutoRangeIncludesZero(false); na.setLowerMargin(0); na.setUpperMargin(0); } else { na = new NumberAxis("scan index"); } // na.setVerticalTickLabels(true); XYPlot xyp = new XYPlot(cd, na, new SymbolAxis("chromatogram", colnames), xyb); xyb.setBlockWidth(1); xyp.setBackgroundPaint(Color.BLACK); xyb.setBaseToolTipGenerator(new XYZToolTipGenerator() { @Override public String generateToolTip(XYZDataset xyzd, int i, int i1) { return colnames[xyzd.getY(i, i1).intValue()] + " @" + xyzd.getXValue(i, i1) + " = " + xyzd.getZValue(i, i1); } @Override public String generateToolTip(XYDataset xyd, int i, int i1) { if (xyd instanceof XYZDataset) { return generateToolTip((XYZDataset) xyd, i, i1); } return colnames[xyd.getY(i, i1).intValue()] + ":" + xyd.getXValue(i, i1); } }); return xyp; }
From source file:it.eng.spagobi.engines.chart.bo.charttypes.blockcharts.TimeBlockChart.java
@Override public JFreeChart createChart(DatasetMap datasets) { logger.debug("IN"); super.createChart(datasets); DefaultXYZDataset dataset = (DefaultXYZDataset) datasets.getDatasets().get("1"); DateAxis xAxis = new DateAxis(yLabel); xAxis.setLowerMargin(0.0);//from w w w . j av a2 s . c o m xAxis.setUpperMargin(0.0); xAxis.setInverted(false); xAxis.setDateFormatOverride(new SimpleDateFormat("dd/MM/yyyy")); if (dateAutoRange) { xAxis.setAutoRange(true); } else { DateFormat formatter = new SimpleDateFormat("dd/MM/yyyy"); DateTickUnit unit = new DateTickUnit(DateTickUnit.DAY, 1, formatter); xAxis.setTickUnit(unit); } if (dateMin != null && dateMax != null) { xAxis.setRange(dateMin, addDay(dateMax)); } else { xAxis.setRange(minDateFound, addDay(maxDateFound)); } // Calendar c=new GregorianCalendar(); // c.set(9 + 2000, Calendar.JANUARY, 1); // java.util.Date minima=c.getTime(); // Calendar c1=new GregorianCalendar(); // c1.set(9 + 2000, Calendar.FEBRUARY, 1); // java.util.Date massima=c1.getTime(); NumberAxis yAxis = new NumberAxis(xLabel); yAxis.setUpperMargin(0.0); yAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); yAxis.setRange(hourMin, hourMax); XYBlockRenderer renderer = new XYBlockRenderer(); renderer.setBlockWidth(BLOCK_HEIGHT); // one block for each minute! renderer.setBlockHeight(0.017); //renderer.setBlockWidth(1); renderer.setBlockAnchor(RectangleAnchor.BOTTOM_LEFT); // MyXYItemLabelGenerator my=new MyXYItemLabelGenerator(); // renderer.setItemLabelsVisible(null); // renderer.setSeriesItemLabelGenerator(0, my); // renderer.setSeriesItemLabelsVisible(0, true); // XYTextAnnotation annotation1 = new XYTextAnnotation( // "P_",1.2309372E12, 14.3); // XYTextAnnotation annotation2 = new XYTextAnnotation( // "P_",1.2308508E12, 16.3); for (Iterator iterator = annotations.keySet().iterator(); iterator.hasNext();) { String annotationCode = (String) iterator.next(); AnnotationBlock annotationBlock = annotations.get(annotationCode); XYTextAnnotation xyAnnotation = new XYTextAnnotation(annotationBlock.getAnnotation(), annotationBlock.getXPosition() + ANNOTATION_HEIGHT, annotationBlock.getYPosition()); if (styleAnnotation != null) { xyAnnotation.setFont(new Font(styleAnnotation.getFontName(), Font.BOLD, styleAnnotation.getSize())); xyAnnotation.setPaint(styleAnnotation.getColor()); } else { xyAnnotation.setFont(new Font("Nome", Font.BOLD, 8)); xyAnnotation.setPaint(Color.BLACK); } xyAnnotation.setTextAnchor(TextAnchor.BOTTOM_LEFT); renderer.addAnnotation(xyAnnotation); } logger.debug("Annotation set"); LookupPaintScale paintScale = new LookupPaintScale(0.5, ranges.size() + 0.5, color); String[] labels = new String[ranges.size() + 1]; labels[0] = ""; // ******************** SCALE **************************** for (Iterator iterator = ranges.iterator(); iterator.hasNext();) { RangeBlocks range = (RangeBlocks) iterator.next(); Integer index = patternRangeIndex.get(range.getPattern()); Color color = range.getColor(); if (color != null) { //Paint colorTransparent=new Color(color.getRed(), color.getGreen(), color.getBlue(), 50); Paint colorTransparent = null; if (addTransparency == true) { colorTransparent = new Color(color.getRed(), color.getGreen(), color.getBlue(), 50); } else { colorTransparent = new Color(color.getRed(), color.getGreen(), color.getBlue()); } paintScale.add(index + 0.5, colorTransparent); } //String insertLabel=" "+range.getLabel(); String insertLabel = range.getLabel(); labels[index + 1] = insertLabel; } renderer.setPaintScale(paintScale); SymbolAxis scaleAxis = new SymbolAxis(null, labels); scaleAxis.setRange(0.5, ranges.size() + 0.5); scaleAxis.setPlot(new PiePlot()); scaleAxis.setGridBandsVisible(false); org.jfree.chart.title.PaintScaleLegend psl = new PaintScaleLegend(paintScale, scaleAxis); psl.setMargin(new RectangleInsets(3, 10, 3, 10)); psl.setPosition(RectangleEdge.BOTTOM); psl.setAxisOffset(5.0); // ******************** END SCALE **************************** logger.debug("Scale Painted"); XYPlot plot = new XYPlot(dataset, xAxis, yAxis, renderer); plot.setOrientation(PlotOrientation.HORIZONTAL); plot.setBackgroundPaint(Color.lightGray); plot.setRangeGridlinePaint(Color.white); plot.setAxisOffset(new RectangleInsets(5, 5, 5, 5)); logger.debug("Plot set"); JFreeChart chart = new JFreeChart(name, plot); if (styleTitle != null) { TextTitle title = setStyleTitle(name, styleTitle); chart.setTitle(title); } chart.removeLegend(); chart.setBackgroundPaint(Color.white); chart.addSubtitle(psl); logger.debug("OUT"); return chart; }
From source file:it.eng.spagobi.engines.chart.bo.charttypes.XYCharts.SimpleBlockChart.java
/** * Creates a chart for the specified dataset. * /*from w ww. j a v a2s. co m*/ * @param dataset the dataset. * * @return A chart instance. */ public JFreeChart createChart(DatasetMap datasets) { logger.debug("IN"); XYZDataset dataset = (XYZDataset) datasets.getDatasets().get("1"); JFreeChart chart = null; NumberAxis xAxis = new NumberAxis(xLabel); xAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); if (xLowerBound != null && xUpperBound != null) { xAxis.setLowerBound(xLowerBound); xAxis.setUpperBound(xUpperBound); } else { xAxis.setAutoRange(true); } xAxis.setAxisLinePaint(Color.white); xAxis.setTickMarkPaint(Color.white); if (addLabelsStyle != null && addLabelsStyle.getFont() != null) { xAxis.setLabelFont(addLabelsStyle.getFont()); xAxis.setLabelPaint(addLabelsStyle.getColor()); } NumberAxis yAxis = new NumberAxis(yLabel); yAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); if (yLowerBound != null && yUpperBound != null) { yAxis.setLowerBound(yLowerBound); yAxis.setUpperBound(yUpperBound); } else yAxis.setAutoRange(true); yAxis.setAxisLinePaint(Color.white); yAxis.setTickMarkPaint(Color.white); if (addLabelsStyle != null && addLabelsStyle.getFont() != null) { yAxis.setLabelFont(addLabelsStyle.getFont()); yAxis.setLabelPaint(addLabelsStyle.getColor()); } XYBlockRenderer renderer = new XYBlockRenderer(); PaintScale paintScale = null; if (grayPaintScale) { paintScale = new GrayPaintScale(minScaleValue, maxScaleValue); } else { if (scaleLowerBound != null && scaleUpperBound != null) { paintScale = new LookupPaintScale(scaleLowerBound, scaleUpperBound, Color.gray); } else { paintScale = new LookupPaintScale(minScaleValue, maxScaleValue, Color.gray); } for (int i = 0; i < zRangeArray.length; i++) { ZRange zRange = zRangeArray[i]; ((LookupPaintScale) paintScale).add(zRange.getValue().doubleValue(), zRange.getColor()); } } renderer.setPaintScale(paintScale); XYPlot plot = new XYPlot(dataset, xAxis, yAxis, renderer); plot.setBackgroundPaint(Color.lightGray); plot.setDomainGridlinesVisible(false); plot.setRangeGridlinePaint(Color.white); plot.setAxisOffset(new RectangleInsets(5, 5, 5, 5)); plot.setForegroundAlpha(0.66f); chart = new JFreeChart(plot); TextTitle title = setStyleTitle(name, styleTitle); chart.setTitle(title); if (subName != null && !subName.equals("")) { TextTitle subTitle = setStyleTitle(subName, styleSubTitle); chart.addSubtitle(subTitle); } chart.removeLegend(); NumberAxis scaleAxis = new NumberAxis(zLabel); scaleAxis.setAxisLinePaint(Color.white); scaleAxis.setTickMarkPaint(Color.white); scaleAxis.setTickLabelFont(new Font("Dialog", Font.PLAIN, 7)); if (scaleLowerBound != null && scaleUpperBound != null) { scaleAxis.setLowerBound(scaleLowerBound); scaleAxis.setUpperBound(scaleUpperBound); } else scaleAxis.setAutoRange(true); if (addLabelsStyle != null && addLabelsStyle.getFont() != null) { scaleAxis.setLabelFont(addLabelsStyle.getFont()); scaleAxis.setLabelPaint(addLabelsStyle.getColor()); } if (blockHeight != null && blockWidth != null) { renderer.setBlockWidth(blockWidth.doubleValue()); renderer.setBlockHeight(blockHeight.doubleValue()); } PaintScaleLegend legend = new PaintScaleLegend(paintScale, scaleAxis); legend.setAxisLocation(AxisLocation.BOTTOM_OR_LEFT); legend.setAxisOffset(5.0); legend.setMargin(new RectangleInsets(5, 5, 5, 5)); legend.setFrame(new BlockBorder(Color.black)); legend.setPadding(new RectangleInsets(10, 10, 10, 10)); legend.setStripWidth(10); legend.setPosition(RectangleEdge.RIGHT); legend.setBackgroundPaint(color); chart.addSubtitle(legend); // chart.setBackgroundPaint(new Color(180, 180, 250)); chart.setBackgroundPaint(color); logger.debug("OUT"); return chart; }
From source file:org.jax.haplotype.analysis.visualization.GenomicGraphFactory.java
/** * Create a SNP block graph for the given parameters. This graph * will show where the intervals do and don't exist. Interval lists * are organized with the X axis label matching the list's key * @param snpIntervals/* w ww . j a va 2 s .com*/ * the blocks * @param startInBasePairs * the x location to start the graph at * @param extentInBasePairs * the extent to use for the graph * @param maximumImageBlockCount * the max # of separate image blocks to use * @param renderAxes * if true render the axes... otherwise dont * @param legendText * the text to use for the legend * @param yAxisText * the text to use for the y axis * @param trueColor * the color to use for true * @param falseColor * the color to use for false * @return * the graph */ public JFreeChart createSnpIntervalGraph( final Map<String, ? extends List<? extends BasePairInterval>> snpIntervals, final long startInBasePairs, final long extentInBasePairs, final int maximumImageBlockCount, final boolean renderAxes, final String legendText, final String yAxisText, final Color trueColor, final Color falseColor) { XYDataset dataset = snpIntervalsToDataset(snpIntervals, startInBasePairs, extentInBasePairs, maximumImageBlockCount); NumberAxis xAxis = new NumberAxis("SNP Position (Base Pairs)"); xAxis.setAutoRangeIncludesZero(false); xAxis.setRange(new Range(startInBasePairs, startInBasePairs + extentInBasePairs)); String[] sortedStrainNames = extractSortedStrainNames(snpIntervals); for (int strainIndex = 0; strainIndex < sortedStrainNames.length; strainIndex++) { LOG.info("Strain Name: " + sortedStrainNames[strainIndex]); } SymbolAxis yAxis = new SymbolAxis(yAxisText == null ? "" : yAxisText, sortedStrainNames); XYPlot plot = new XYPlot(dataset, xAxis, yAxis, null); LegendItemCollection items = new LegendItemCollection(); if (legendText != null) { items.add(new LegendItem(legendText, null, null, null, new Rectangle2D.Double(-3.0, -3.0, 6.0, 6.0), trueColor, new BasicStroke(), Color.BLACK)); } plot.setFixedLegendItems(items); XYBlockRenderer r = new XYBlockRenderer(); SmoothPaintScale ps = new SmoothPaintScale(0.0, 1.0, falseColor, trueColor); r.setPaintScale(ps); r.setBlockHeight(1.0); r.setBlockWidth(1.0); plot.setRenderer(r); final JFreeChart chart; if (renderAxes) { chart = new JFreeChart("Identical By State Blocks", JFreeChart.DEFAULT_TITLE_FONT, plot, true); } else { xAxis.setVisible(false); yAxis.setVisible(false); plot.setInsets(new RectangleInsets(0.0, 0.0, 0.0, 0.0)); chart = new JFreeChart(plot); } chart.setBackgroundPaint(Color.WHITE); return chart; }
From source file:SciTK.PlotXYZBlock.java
private void init(String x_label, String y_label, String window_title) { chart = ChartFactory.createScatterPlot("", x_label, y_label, data, PlotOrientation.VERTICAL, false, true, false);/* www .ja va 2s .co m*/ // turn off borders of the plot: XYPlot p = chart.getXYPlot(); p.getDomainAxis().setLowerMargin(0.0); p.getDomainAxis().setUpperMargin(0.0); p.getRangeAxis().setLowerMargin(0.0); p.getRangeAxis().setUpperMargin(0.0); // -------------------------------------------- // set up a lookup table // -------------------------------------------- // this is how we render the block plots: XYBlockRenderer renderer = new XYBlockRenderer(); // need to find max and min z of the data set: double min = 0; double max = 0; for (int i = 0; i < data.getSeriesCount(); i++) // iterate over data sets { for (int j = 0; j < data.getItemCount(i); j++) // iterate over points in dataset { if (data.getZValue(i, j) < min) min = data.getZValue(i, j); else if (data.getZValue(i, j) > max) max = data.getZValue(i, j); } } // create paint scale using min and max values, default color black: LookupPaintScale paintScale = new LookupPaintScale(min, max, Color.black); // set up the LUT: double step_size = (max - min) / 255.; // step size for LUT for (int i = 0; i < 256; i++) { paintScale.add(min + i * step_size, new Color(i, i, i, 255)); } renderer.setPaintScale(paintScale); // set this renderer to the plot: p.setRenderer(renderer); // -------------------------------------------- // set up a color bar // -------------------------------------------- // create an array of display labels: num_labels = 10; // default to 10 labels on color bar double display_step_size = (max - min) / ((double) num_labels); String[] scale_bar_labels = new String[num_labels + 1]; // to format numbers in scientific notation: DecimalFormat formater = new DecimalFormat("0.#E0"); // create list of labesl: for (int i = 0; i <= num_labels; i++) { scale_bar_labels[i] = formater.format(min + i * display_step_size); } // create axis: SymbolAxis scaleAxis = new SymbolAxis(null, scale_bar_labels); scaleAxis.setRange(min, max); scaleAxis.setPlot(new PiePlot()); scaleAxis.setGridBandsVisible(false); // set up the paint scale: psl = new PaintScaleLegend(paintScale, scaleAxis); psl.setBackgroundPaint(new Color(255, 255, 255, 0)); // clear background // set up frame with buffer region to allow text display psl.setFrame(new LineBorder((Paint) Color.BLACK, new BasicStroke((float) 1.0), new RectangleInsets(15, 10, 15, 10))); psl.setAxisOffset(5.0); // display on right side: psl.setPosition(RectangleEdge.RIGHT); // margin around color scale: psl.setMargin(new RectangleInsets(20, 15, 20, 15)); // add to the chart so it will be displayed by default: chart.addSubtitle(psl); // -------------------------------------------- // WINDOW-RELATED UI // -------------------------------------------- // set up the generic plot UI: super.window_title = window_title; super.initUI(); // add another menu item JMenuBar mb = super.getJMenuBar(); // get the menu bar // find menu named "Plot" JMenu menu_plot = null; for (int i = 0; i < mb.getMenuCount(); i++) { if (mb.getMenu(i).getText() == "Plot") menu_plot = mb.getMenu(i); } // Add a new checkbox for the color scale bar JCheckBoxMenuItem menu_plot_scalebar = new JCheckBoxMenuItem("Color Scale"); menu_plot_scalebar.setToolTipText("Show color scale bar?"); menu_plot_scalebar.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent event) { AbstractButton aButton = (AbstractButton) event.getSource(); boolean selected = aButton.getModel().isSelected(); setScaleBar(selected); } }); // set appropirate checkbox state: menu_plot_scalebar.setState(true); if (menu_plot != null) // sanity check menu_plot.add(menu_plot_scalebar); }
From source file:org.gumtree.vis.hist2d.Hist2D.java
private void createRender(PaintScale scale) { // renderer = new Render2D(); renderer = new XYBlockRenderer(); renderer.setPaintScale(scale);/* w w w . j a va 2 s.com*/ renderer.setBlockHeight(dataset.getYBlockSize()); renderer.setBlockWidth(dataset.getXBlockSize()); // XYToolTipGenerator toolTip = new StandardXYZToolTipGenerator(); // renderer.setBaseToolTipGenerator(toolTip); }