List of usage examples for org.springframework.jdbc.core.namedparam MapSqlParameterSource addValue
public MapSqlParameterSource addValue(String paramName, @Nullable Object value)
From source file:com.epam.catgenome.dao.reference.ReferenceGenomeDao.java
/** * Add a BiologicalDataItem(only BED or GFF/GTF) as annotation for the genome * @param referenceId List of IDs of BiologicalDataItem instances * @param annotationFileId ID of BiologicalDataItem instance *//*w w w.j av a2s . c o m*/ @Transactional(propagation = Propagation.MANDATORY) public void addAnnotationFile(Long referenceId, Long annotationFileId) { MapSqlParameterSource params = new MapSqlParameterSource(); params.addValue(GenomeParameters.REFERENCE_GENOME_ID.name(), referenceId); params.addValue(BiologicalDataItemDao.BiologicalDataItemParameters.BIO_DATA_ITEM_ID.name(), annotationFileId); getNamedParameterJdbcTemplate().update(addAnnotationDataItemByReferenceIdQuery, params); }
From source file:com.epam.catgenome.dao.reference.ReferenceGenomeDao.java
/** * Remove annotation file from the genome * @param referenceId ID of the genome/*from ww w .j a v a2 s. c o m*/ * @param annotationFileId ID of BiologicalDataItem instance */ @Transactional(propagation = Propagation.MANDATORY) public void removeAnnotationFile(Long referenceId, Long annotationFileId) { MapSqlParameterSource params = new MapSqlParameterSource(); params.addValue(GenomeParameters.REFERENCE_GENOME_ID.name(), referenceId); params.addValue(BiologicalDataItemDao.BiologicalDataItemParameters.BIO_DATA_ITEM_ID.name(), annotationFileId); getNamedParameterJdbcTemplate().update(deleteAnnotationDataItemByReferenceIdQuery, params); }
From source file:com.ushahidi.swiftriver.core.api.dao.impl.JpaRiverDao.java
public List<RiverTagTrend> getTrendingTags(Long riverId, TrendFilter trendFilter) { int count = trendFilter.getCount(); int page = trendFilter.getPage(); String sql = "SELECT a.tag, a.tag_type, SUM(a.count) AS tag_count, " + "a.date_pub AS trend_date " + "FROM river_tag_trends a " + "WHERE a.tag_type <> 'place' " + "AND a.river_id = :riverId "; if (trendFilter.getDateFrom() != null) { sql += "AND a.date_pub > :dateFrom "; }//from w w w.j a va 2 s .c o m if (trendFilter.getDateTo() != null) { sql += "AND a.date_pub <= :dateTo "; } sql += "GROUP BY a.tag, a.tag_type, trend_date ORDER BY `trend_date` ASC " + "LIMIT " + count + " OFFSET " + count * (page - 1); MapSqlParameterSource params = new MapSqlParameterSource(); params.addValue("riverId", riverId); if (trendFilter.getDateFrom() != null) { params.addValue("dateFrom", trendFilter.getDateFrom()); } if (trendFilter.getDateTo() != null) { params.addValue("dateTo", trendFilter.getDateTo()); } List<RiverTagTrend> tagTrends = new ArrayList<RiverTagTrend>(); for (Map<String, Object> row : jdbcTemplate.queryForList(sql, params)) { RiverTagTrend tagTrend = new RiverTagTrend(); tagTrend.setTag((String) row.get("tag")); tagTrend.setTagType((String) row.get("tag_type")); tagTrend.setCount(((Number) row.get("tag_count")).longValue()); tagTrend.setDatePublished((Date) row.get("trend_date")); tagTrends.add(tagTrend); } return tagTrends; }
From source file:com.epam.catgenome.dao.BiologicalDataItemDao.java
/** * Loads a List of BiologicalDataItem from the database by their IDs * @param ids List of IDs of BiologicalDataItem instances * @return List of BiologicalDataItem, matching specified IDs */// w w w. j a v a 2 s.c o m @Transactional(propagation = Propagation.MANDATORY) public List<BiologicalDataItem> loadBiologicalDataItemsByIds(List<Long> ids) { if (ids == null || ids.isEmpty()) { return Collections.emptyList(); } Long listId = daoHelper.createTempLongList(ids); final MapSqlParameterSource params = new MapSqlParameterSource(); params.addValue(BiologicalDataItemParameters.BIO_DATA_ITEM_ID.name(), listId); List<BiologicalDataItem> items = getNamedParameterJdbcTemplate().query(loadBiologicalDataItemsByIdsQuery, params, getRowMapper()); daoHelper.clearTempList(listId); return items; }
From source file:com.joliciel.jochre.doc.DocumentDaoJdbc.java
@Override public void saveJochrePage(JochrePage jochrePage) { NamedParameterJdbcTemplate jt = new NamedParameterJdbcTemplate(this.getDataSource()); MapSqlParameterSource paramSource = new MapSqlParameterSource(); JochrePageInternal iJochrePage = (JochrePageInternal) jochrePage; paramSource.addValue("page_doc_id", jochrePage.getDocumentId()); paramSource.addValue("page_index", jochrePage.getIndex()); String sql = null;//from w w w . ja va2 s .com if (jochrePage.isNew()) { sql = "SELECT nextval('ocr_page_id_seq')"; LOG.info(sql); int jochrePageId = jt.queryForInt(sql, paramSource); paramSource.addValue("page_id", jochrePageId); sql = "INSERT INTO ocr_page (page_id, page_doc_id, page_index) " + "VALUES (:page_id, :page_doc_id, :page_index)"; LOG.info(sql); logParameters(paramSource); jt.update(sql, paramSource); iJochrePage.setId(jochrePageId); } else { paramSource.addValue("page_id", jochrePage.getId()); sql = "UPDATE ocr_page" + " SET page_doc_id = :page_doc_id" + ", page_index = :page_index" + " WHERE page_id = :page_id"; LOG.info(sql); logParameters(paramSource); jt.update(sql, paramSource); } }
From source file:com.ushahidi.swiftriver.core.api.dao.impl.JpaRiverDao.java
public List<RiverTagTrend> getTrendingPlaces(Long riverId, TrendFilter trendFilter) { int count = trendFilter.getCount(); int page = trendFilter.getPage(); String sql = "SELECT a.tag, SUM(a.count) AS tag_count, " + "p.latitude, p.longitude, " + "a.date_pub AS trend_date " + "FROM river_tag_trends a " + "INNER JOIN places p ON (p.place_name = a.tag) " + "WHERE a.tag_type = 'place' " + "AND a.river_id = :riverId "; if (trendFilter.getDateFrom() != null) { sql += "AND a.date_pub > :dateFrom "; }//from ww w . j av a 2 s . c o m if (trendFilter.getDateTo() != null) { sql += "AND a.date_pub <= :dateTo "; } sql += "GROUP BY a.tag, trend_date ORDER BY trend_date ASC " + "LIMIT " + count + " OFFSET " + count * (page - 1); MapSqlParameterSource params = new MapSqlParameterSource(); params.addValue("riverId", riverId); if (trendFilter.getDateFrom() != null) { params.addValue("dateFrom", trendFilter.getDateFrom()); } if (trendFilter.getDateTo() != null) { params.addValue("dateTo", trendFilter.getDateTo()); } List<RiverTagTrend> placeTrends = new ArrayList<RiverTagTrend>(); for (Map<String, Object> row : jdbcTemplate.queryForList(sql, params)) { RiverTagTrend tagTrend = new RiverTagTrend(); tagTrend.setTag((String) row.get("tag")); tagTrend.setTagType("place"); tagTrend.setLatitude(((Number) row.get("latitude")).floatValue()); tagTrend.setLongitude(((Number) row.get("longitude")).floatValue()); tagTrend.setCount(((Number) row.get("tag_count")).longValue()); tagTrend.setDatePublished((Date) row.get("trend_date")); placeTrends.add(tagTrend); } return placeTrends; }
From source file:com.ushahidi.swiftriver.core.api.dao.impl.JpaRiverDropDao.java
/** * Populate custom field for the given drops. * // w w w . ja v a 2s.co m * @param drops */ @SuppressWarnings("rawtypes") public void populateForms(List<Drop> drops) { Map<Long, Integer> dropIndex = new HashMap<Long, Integer>(); int i = 0; for (Drop drop : drops) { dropIndex.put(drop.getId(), i); i++; } String sql = "SELECT form.id, form.drop_id, form_id, field.field_id, field.value "; sql += "FROM river_droplet_form form, river_droplet_form_field field "; sql += "WHERE form.id = field.droplet_form_id "; sql += "AND drop_id IN (:drop_ids) "; MapSqlParameterSource params = new MapSqlParameterSource(); params.addValue("drop_ids", dropIndex.keySet()); List<Map<String, Object>> results = this.namedJdbcTemplate.queryForList(sql, params); // Add form values to their respective drops. Map<Long, RiverDropForm> dropForms = new HashMap<Long, RiverDropForm>(); for (Map<String, Object> result : results) { Long dropId = ((Number) result.get("drop_id")).longValue(); Drop drop = drops.get(dropIndex.get(dropId)); if (drop.getForms() == null) { drop.setForms(new ArrayList<DropForm>()); } Long dropFormId = ((Number) result.get("id")).longValue(); RiverDropForm dropForm = dropForms.get(dropFormId); if (dropForm == null) { dropForm = new RiverDropForm(); dropForm.setId(dropFormId); Form form = new Form(); form.setId(((Number) result.get("form_id")).longValue()); dropForm.setForm(form); dropForm.setValues(new ArrayList<RiverDropFormField>()); dropForms.put(dropFormId, dropForm); } RiverDropFormField value = new RiverDropFormField(); FormField field = new FormField(); field.setId(((Number) result.get("field_id")).longValue()); value.setField(field); value.setValue((String) result.get("value")); List<RiverDropFormField> values = dropForm.getValues(); values.add(value); if (!drop.getForms().contains(dropForm)) { drop.getForms().add(dropForm); } } }
From source file:com.epam.catgenome.dao.reference.ReferenceGenomeDao.java
@Transactional(propagation = Propagation.MANDATORY) public Reference createReferenceGenome(final Reference reference) { final MapSqlParameterSource params = new MapSqlParameterSource(); params.addValue(GenomeParameters.REFERENCE_GENOME_ID.name(), reference.getId()); params.addValue(GenomeParameters.BIO_DATA_ITEM_ID.name(), reference.getBioDataItemId()); params.addValue(GenomeParameters.SIZE.name(), reference.getSize()); params.addValue(GenomeParameters.INDEX_ID.name(), reference.getIndex().getId()); params.addValue(GenomeParameters.GENE_ITEM_ID.name(), reference.getGeneFile() != null ? reference.getGeneFile().getId() : null); getNamedParameterJdbcTemplate().update(createReferenceGenomeQuery, params); return reference; }
From source file:com.epam.catgenome.dao.BiologicalDataItemDao.java
/** * Persists a BiologicalDataItem instance into the database * @param item BiologicalDataItem to persist *//*from w ww . j a v a 2 s . co m*/ @Transactional(propagation = Propagation.MANDATORY) public void createBiologicalDataItem(BiologicalDataItem item) { if (!item.getFormat().isIndex() || (item.getFormat().isIndex() && !StringUtils.isEmpty(item.getName()))) { Assert.isTrue(!StringUtils.isEmpty(item.getName()), "File name is required for registration."); List<BiologicalDataItem> items = loadFilesByNameStrict(item.getName()); Assert.isTrue(items.isEmpty(), MessageHelper.getMessage(MessagesConstants.ERROR_FILE_NAME_EXISTS, item.getName())); item.setId(daoHelper.createId(biologicalDataItemSequenceName)); } else { item.setId(daoHelper.createId(biologicalDataItemSequenceName)); item.setName("INDEX " + item.getId()); } final MapSqlParameterSource params = new MapSqlParameterSource(); params.addValue(BiologicalDataItemParameters.BIO_DATA_ITEM_ID.name(), item.getId()); params.addValue(BiologicalDataItemParameters.NAME.name(), item.getName()); params.addValue(BiologicalDataItemParameters.TYPE.name(), item.getType().getId()); params.addValue(BiologicalDataItemParameters.PATH.name(), item.getPath()); params.addValue(BiologicalDataItemParameters.FORMAT.name(), item.getFormat().getId()); params.addValue(BiologicalDataItemParameters.CREATED_DATE.name(), item.getCreatedDate()); params.addValue(BiologicalDataItemParameters.CREATED_BY.name(), item.getCreatedBy()); params.addValue(BiologicalDataItemParameters.BUCKET_ID.name(), item.getBucketId()); params.addValue(BiologicalDataItemParameters.PRETTY_NAME.name(), item.getPrettyName()); getNamedParameterJdbcTemplate().update(insertBiologicalDataItemQuery, params); }
From source file:com.epam.catgenome.dao.reference.ReferenceGenomeDao.java
/** * Persists a {@code Reference} entity in database with a specified ID * @param reference to persist//from w w w . j av a 2s . com * @param referenceId ID for the reference * @return saved {@code Reference} instance */ @Transactional(propagation = Propagation.MANDATORY) public Reference createReferenceGenome(final Reference reference, final long referenceId) { reference.setBioDataItemId(reference.getId()); reference.setId(referenceId); final MapSqlParameterSource params = new MapSqlParameterSource(); params.addValue(GenomeParameters.REFERENCE_GENOME_ID.name(), reference.getId()); params.addValue(GenomeParameters.BIO_DATA_ITEM_ID.name(), reference.getBioDataItemId()); params.addValue(GenomeParameters.SIZE.name(), reference.getSize()); params.addValue(GenomeParameters.INDEX_ID.name(), reference.getIndex().getId()); params.addValue(GenomeParameters.GENE_ITEM_ID.name(), reference.getGeneFile() != null ? reference.getGeneFile().getId() : null); getNamedParameterJdbcTemplate().update(createReferenceGenomeQuery, params); return reference; }