Java FileReader Read loadKeggInteractions(String species, String location)

Description

load Kegg Interactions

License

Open Source License

Declaration

public static ArrayList loadKeggInteractions(String species, String location) 

Method Source Code

//package com.java2s;
/* This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
 *///from w  ww.j  av a  2s  . c o m

import java.util.ArrayList;

import java.io.FileReader;
import java.io.IOException;

import java.io.LineNumberReader;

public class Main {
    public static ArrayList loadKeggInteractions(String species, String location) {
        ArrayList<String> kegg = new ArrayList<String>();
        String fileName = location + species + "_kegg_edges.txt";
        try {
            FileReader fr = new FileReader(fileName);
            LineNumberReader lnr = new LineNumberReader(fr);
            String s = null;
            while ((s = lnr.readLine()) != null) {
                s = s.trim();
                kegg.add(s);
            }
            lnr.close();
            fr.close();
            System.out.println("Loaded KEGG edges: " + kegg.size());
            return kegg;
        } catch (IOException ioe) {
            System.out.println(ioe);
        }

        return null;
    }
}

Related

1. load(String filename)
2. load(String fileName, Class klass)
3. loadIndex(File root_)
4. loadJSON(File file)
5. readFile(File f)
6. readFile(File f)
7. readFile(File file)
8. readFile(File file)