Example usage for org.apache.commons.cli CommandLine getArgList

List of usage examples for org.apache.commons.cli CommandLine getArgList

  1. HOME
  2. Java
  3. org.apache.commons
  4. org.apache.commons.cli.*
  5. CommandLine
  6. getArgList

Introduction

In this page you can find the example usage for org.apache.commons.cli CommandLine getArgList.

Prototype

public List getArgList()

Source Link

Document

Retrieve any left-over non-recognized options and arguments

Usage

From source file:org.dcm4che.tool.dcm2jpg.Dcm2Jpg.java

public static void main(String[] args) {
    try {//from  w ww.  j  av  a2s . c om
        CommandLine cl = parseComandLine(args);
        Dcm2Jpg main = new Dcm2Jpg();
        main.initImageWriter(cl.getOptionValue("F", "JPEG"), cl.getOptionValue("suffix"),
                cl.getOptionValue("E"), cl.getOptionValue("C"), (Number) cl.getParsedOptionValue("q"));
        if (cl.hasOption("frame"))
            main.setFrame(((Number) cl.getParsedOptionValue("frame")).intValue());
        if (cl.hasOption("c"))
            main.setWindowCenter(((Number) cl.getParsedOptionValue("c")).floatValue());
        if (cl.hasOption("w"))
            main.setWindowWidth(((Number) cl.getParsedOptionValue("w")).floatValue());
        if (cl.hasOption("window"))
            main.setWindowIndex(((Number) cl.getParsedOptionValue("window")).intValue() - 1);
        if (cl.hasOption("voilut"))
            main.setVOILUTIndex(((Number) cl.getParsedOptionValue("voilut")).intValue() - 1);
        if (cl.hasOption("overlays"))
            main.setOverlayActivationMask(parseHex(cl.getOptionValue("overlays")));
        if (cl.hasOption("ovlygray"))
            main.setOverlayGrayscaleValue(parseHex(cl.getOptionValue("ovlygray")));
        main.setPreferWindow(!cl.hasOption("uselut"));
        main.setAutoWindowing(!cl.hasOption("noauto"));
        main.setPresentationState(loadDicomObject((File) cl.getParsedOptionValue("ps")));
        @SuppressWarnings("unchecked")
        final List<String> argList = cl.getArgList();
        int argc = argList.size();
        if (argc < 2)
            throw new ParseException(rb.getString("missing"));
        File dest = new File(argList.get(argc - 1));
        if ((argc > 2 || new File(argList.get(0)).isDirectory()) && !dest.isDirectory())
            throw new ParseException(MessageFormat.format(rb.getString("nodestdir"), dest));
        for (String src : argList.subList(0, argc - 1))
            main.mconvert(new File(src), dest);
    } catch (ParseException e) {
        System.err.println("dcm2jpg: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (Exception e) {
        System.err.println("dcm2jpg: " + e.getMessage());
        e.printStackTrace();
        System.exit(2);
    }
}

From source file:org.dcm4che.tool.dcm2xml.Dcm2Xml.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    try {/*w ww  . j  a v a2s  .c om*/
        CommandLine cl = parseComandLine(args);
        Dcm2Xml main = new Dcm2Xml();
        if (cl.hasOption("x"))
            main.setXSLT(new File(cl.getOptionValue("x")));
        main.setIndent(cl.hasOption("I"));
        main.setIncludeKeyword(!cl.hasOption("K"));
        main.setIncludeNamespaceDeclaration(cl.hasOption("xmlns"));
        if (cl.hasOption("xml11"))
            main.setXMLVersion(XML_1_1);
        configureBulkdata(main, cl);
        String fname = fname(cl.getArgList());
        if (fname.equals("-")) {
            main.parse(new DicomInputStream(System.in));
        } else {
            DicomInputStream dis = new DicomInputStream(new File(fname));
            try {
                main.parse(dis);
            } finally {
                dis.close();
            }
        }
    } catch (ParseException e) {
        System.err.println("dcm2xml: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (Exception e) {
        System.err.println("dcm2xml: " + e.getMessage());
        e.printStackTrace();
        System.exit(2);
    }
}

From source file:org.dcm4che.tool.dcmdir.DcmDir.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    try {//from w  ww . ja  v a2 s.  com
        CommandLine cl = parseComandLine(args);
        DcmDir main = new DcmDir();
        main.setInUse(cl.hasOption("in-use"));
        main.setEncodingOptions(CLIUtils.encodingOptionsOf(cl));
        CLIUtils.configure(main.fsInfo, cl);
        main.setOriginalSequenceLength(cl.hasOption("orig-seq-len"));
        if (cl.hasOption("w")) {
            String s = cl.getOptionValue("w");
            try {
                main.setWidth(Integer.parseInt(s));
            } catch (IllegalArgumentException e) {
                throw new ParseException(MessageFormat.format(rb.getString("illegal-width"), s));
            }
        }
        try {
            List<String> argList = cl.getArgList();
            long start = System.currentTimeMillis();
            if (cl.hasOption("l")) {
                main.openForReadOnly(new File(cl.getOptionValue("l")));
                main.list();
            } else if (cl.hasOption("d")) {
                main.open(new File(cl.getOptionValue("d")));
                int num = 0;
                for (String arg : argList)
                    num += main.removeReferenceTo(new File(arg));
                main.close();
                long end = System.currentTimeMillis();
                System.out.println();
                System.out.println(
                        MessageFormat.format(rb.getString("deleted"), num, main.getFile(), (end - start)));
            } else if (cl.hasOption("p")) {
                main.open(new File(cl.getOptionValue("p")));
                int num = main.purge();
                main.close();
                long end = System.currentTimeMillis();
                System.out.println(
                        MessageFormat.format(rb.getString("purged"), num, main.getFile(), (end - start)));
            } else if (cl.hasOption("z")) {
                String fpath = cl.getOptionValue("z");
                File f = new File(fpath);
                File bak = new File(fpath + "~");
                main.compact(f, bak);
                long end = System.currentTimeMillis();
                System.out.println(MessageFormat.format(rb.getString("compacted"), f, bak.length(), f.length(),
                        (end - start)));
            } else {
                if (cl.hasOption("c")) {
                    main.create(new File(cl.getOptionValue("c")));
                } else if (cl.hasOption("u")) {
                    main.open(new File(cl.getOptionValue("u")));
                }
                main.setRecordFactory(new RecordFactory());
                int num = 0;
                for (String arg : argList)
                    num += main.addReferenceTo(new File(arg));
                main.close();
                long end = System.currentTimeMillis();
                System.out.println();
                System.out.println(
                        MessageFormat.format(rb.getString("added"), num, main.getFile(), (end - start)));
            }
        } finally {
            main.close();
        }
    } catch (ParseException e) {
        System.err.println("dcmdir: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (IOException e) {
        System.err.println("dcmdir: " + e.getMessage());
        e.printStackTrace();
        System.exit(2);
    }
}

From source file:org.dcm4che.tool.dcmdump.DcmDump.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    try {/*  ww w .j a v  a  2 s . c  o m*/
        CommandLine cl = parseComandLine(args);
        DcmDump main = new DcmDump();
        if (cl.hasOption("w")) {
            String s = cl.getOptionValue("w");
            try {
                main.setWidth(Integer.parseInt(s));
            } catch (IllegalArgumentException e) {
                throw new ParseException(MessageFormat.format(rb.getString("illegal-width"), s));
            }
        }
        String fname = fname(cl.getArgList());
        if (fname.equals("-")) {
            main.parse(new DicomInputStream(System.in));
        } else {
            DicomInputStream dis = new DicomInputStream(new File(fname));
            try {
                main.parse(dis);
            } finally {
                dis.close();
            }
        }
    } catch (ParseException e) {
        System.err.println("dcmdump: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (IOException e) {
        System.err.println("dcmdump: " + e.getMessage());
        System.exit(2);
    }
}

From source file:org.dcm4che.tool.dcmvalidate.DcmValidate.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    try {/*from w  w w .  ja v  a2  s . co  m*/
        CommandLine cl = parseComandLine(args);
        DcmValidate main = new DcmValidate();
        String iodFile = cl.getOptionValue("iod");
        if (iodFile == null)
            throw new MissingOptionException(Arrays.asList("iod"));
        main.setIOD(IOD.load(iodFile));
        List<String> fnames = cl.getArgList();
        if (fnames.isEmpty())
            throw new ParseException(rb.getString("missing"));

        for (String fname : fnames)
            validate(main, new File(fname));

    } catch (ParseException e) {
        System.err.println("DcmValidate: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (IOException e) {
        System.err.println("DcmValidate: " + e.getMessage());
        System.exit(2);
    }
}

From source file:org.dcm4che.tool.emf2sf.Emf2sf.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    try {//from w w  w. j  a  va 2  s .  co m
        CommandLine cl = parseComandLine(args);
        Emf2sf main = new Emf2sf();
        if (cl.hasOption("frame"))
            main.setFrames(toFrames(cl.getOptionValues("frame")));
        main.setPreserveSeriesInstanceUID(cl.hasOption("not-chseries"));
        main.setOutputDirectory(new File(cl.getOptionValue("out-dir", ".")));
        if (cl.hasOption("out-file"))
            main.setOutputFileFormat(cl.getOptionValue("out-file"));
        long start = System.currentTimeMillis();
        int n = main.extract(new File(fname(cl.getArgList())));
        long end = System.currentTimeMillis();
        System.out.println();
        System.out.println(MessageFormat.format(rb.getString("extracted"), n, (end - start) / 1000f));
    } catch (ParseException e) {
        System.err.println("emf2sf: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (Exception e) {
        System.err.println("emf2sf: " + e.getMessage());
        e.printStackTrace();
        System.exit(2);
    }
}

From source file:org.dcm4che.tool.findscu.FindSCU.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    try {/*from   w w w.  jav  a 2  s  .com*/
        CommandLine cl = parseComandLine(args);
        FindSCU main = new FindSCU();
        CLIUtils.configureConnect(main.remote, main.rq, cl);
        CLIUtils.configureBind(main.conn, main.ae, cl);
        CLIUtils.configure(main.conn, cl);
        main.remote.setTlsProtocols(main.conn.getTlsProtocols());
        main.remote.setTlsCipherSuites(main.conn.getTlsCipherSuites());
        configureServiceClass(main, cl);
        configureKeys(main, cl);
        configureOutput(main, cl);
        configureCancel(main, cl);
        main.setPriority(CLIUtils.priorityOf(cl));
        ExecutorService executorService = Executors.newSingleThreadExecutor();
        ScheduledExecutorService scheduledExecutorService = Executors.newSingleThreadScheduledExecutor();
        main.device.setExecutor(executorService);
        main.device.setScheduledExecutor(scheduledExecutorService);
        try {
            main.open();
            List<String> argList = cl.getArgList();
            if (argList.isEmpty())
                main.query();
            else
                for (String arg : argList)
                    main.query(new File(arg));
        } finally {
            main.close();
            executorService.shutdown();
            scheduledExecutorService.shutdown();
        }
    } catch (ParseException e) {
        System.err.println("findscu: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (Exception e) {
        System.err.println("findscu: " + e.getMessage());
        e.printStackTrace();
        System.exit(2);
    }
}

From source file:org.dcm4che.tool.getscu.GetSCU.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    try {//from   w ww  .  j  a v  a2s  .  c om
        CommandLine cl = parseComandLine(args);
        GetSCU main = new GetSCU();
        CLIUtils.configureConnect(main.remote, main.rq, cl);
        CLIUtils.configureBind(main.conn, main.ae, cl);
        CLIUtils.configure(main.conn, cl);
        main.remote.setTlsProtocols(main.conn.getTlsProtocols());
        main.remote.setTlsCipherSuites(main.conn.getTlsCipherSuites());
        configureServiceClass(main, cl);
        configureKeys(main, cl);
        main.setPriority(CLIUtils.priorityOf(cl));
        configureStorageDirectory(main, cl);
        ExecutorService executorService = Executors.newSingleThreadExecutor();
        ScheduledExecutorService scheduledExecutorService = Executors.newSingleThreadScheduledExecutor();
        main.device.setExecutor(executorService);
        main.device.setScheduledExecutor(scheduledExecutorService);
        try {
            main.open();
            List<String> argList = cl.getArgList();
            if (argList.isEmpty())
                main.retrieve();
            else
                for (String arg : argList)
                    main.retrieve(new File(arg));
        } finally {
            main.close();
            executorService.shutdown();
            scheduledExecutorService.shutdown();
        }
    } catch (ParseException e) {
        System.err.println("getscu: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (Exception e) {
        System.err.println("getscu: " + e.getMessage());
        e.printStackTrace();
        System.exit(2);
    }
}

From source file:org.dcm4che.tool.hl72xml.HL72Xml.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    try {/*  w ww .j av  a2s  . c  o m*/
        CommandLine cl = parseComandLine(args);
        HL72Xml main = new HL72Xml();
        if (cl.hasOption("x")) {
            String s = cl.getOptionValue("x");
            main.setXSLT(new File(s).toURI().toURL());
        }
        main.setCharacterSet(cl.getOptionValue("charset"));
        main.setIndent(cl.hasOption("I"));
        main.setIncludeNamespaceDeclaration(cl.hasOption("xmlns"));
        String fname = fname(cl.getArgList());
        if (fname.equals("-")) {
            main.parse(System.in);
        } else {
            FileInputStream dis = new FileInputStream(fname);
            try {
                main.parse(dis);
            } finally {
                dis.close();
            }
        }
    } catch (ParseException e) {
        System.err.println("hl72xml: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (Exception e) {
        System.err.println("hl72xml: " + e.getMessage());
        e.printStackTrace();
        System.exit(2);
    }
}

From source file:org.dcm4che.tool.hl7pix.HL7Pix.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    try {/*from   w  ww.  java2 s.  c  o  m*/
        CommandLine cl = parseComandLine(args);
        HL7Pix main = new HL7Pix();
        configureConnect(main, cl);
        configureBind(main, cl);
        CLIUtils.configure(main.conn, cl);
        main.setCharacterSet(cl.getOptionValue("charset"));
        main.remote.setTlsProtocols(main.conn.getTlsProtocols());
        main.remote.setTlsCipherSuites(main.conn.getTlsCipherSuites());
        List<String> argList = cl.getArgList();
        if (argList.isEmpty())
            throw new ParseException(rb.getString("missing"));
        try {
            main.open();
            main.query(argList.get(0), argList.subList(1, argList.size()).toArray(new String[0]));
        } finally {
            main.close();
        }
    } catch (ParseException e) {
        System.err.println("hl7pix: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (Exception e) {
        System.err.println("hl7pix: " + e.getMessage());
        e.printStackTrace();
        System.exit(2);
    }
}