Example usage for org.apache.commons.cli CommandLine getArgList

List of usage examples for org.apache.commons.cli CommandLine getArgList

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Introduction

In this page you can find the example usage for org.apache.commons.cli CommandLine getArgList.

Prototype

public List getArgList()

Source Link

Document

Retrieve any left-over non-recognized options and arguments

Usage

From source file:org.dcm4che3.tool.jpg2dcm.Jpg2Dcm.java

public static void main(String[] args) {
    try {//from w ww  . j  av  a  2  s .c o m
        CommandLine cl = parse(args);
        Jpg2Dcm jpg2Dcm = new Jpg2Dcm();
        if (cl.hasOption(LONG_OPT_CHARSET)) {
            jpg2Dcm.setCharset(cl.getOptionValue(LONG_OPT_CHARSET));
        }
        if (cl.hasOption(LONG_OPT_UID_PREFIX)) {
            UIDUtils.setRoot(cl.getOptionValue(LONG_OPT_UID_PREFIX));
        }
        if (cl.hasOption(LONG_OPT_MPEG)) {
            jpg2Dcm.setTransferSyntax(UID.MPEG2);
        }
        if (cl.hasOption(LONG_OPT_TRANSFER_SYNTAX)) {
            jpg2Dcm.setTransferSyntax(cl.getOptionValue(LONG_OPT_TRANSFER_SYNTAX));
        }
        jpg2Dcm.setNoAPPn(cl.hasOption(LONG_OPT_NO_APPN));

        @SuppressWarnings("rawtypes")
        List argList = cl.getArgList();
        File jpgFile = new File((String) argList.get(0));
        File dcmFile = new File((String) argList.get(1));
        long start = System.currentTimeMillis();
        jpg2Dcm.convert(cl, jpgFile, dcmFile);
        long fin = System.currentTimeMillis();
        LOG.info("Encapsulated " + jpgFile + " to " + dcmFile + " in " + (fin - start) + "ms.");
    } catch (IOException e) {
        e.printStackTrace();
    }
}

From source file:org.dcm4che3.tool.jpg2dcm.Jpg2Dcm.java

private static CommandLine parse(String[] args) {
    Options opts = new Options();

    OptionBuilder.withArgName("code");
    OptionBuilder.hasArg();//from   w  ww .j av a2  s.  c  o m
    OptionBuilder.withDescription(OPT_CHARSET_DESC);
    OptionBuilder.withLongOpt(LONG_OPT_CHARSET);
    opts.addOption(OptionBuilder.create());

    OptionBuilder.withArgName("file");
    OptionBuilder.hasArg();
    OptionBuilder.withDescription(OPT_AUGMENT_CONFIG_DESC);
    opts.addOption(OptionBuilder.create("c"));

    OptionBuilder.withArgName("file");
    OptionBuilder.hasArg();
    OptionBuilder.withDescription(OPT_REPLACE_CONFIG_DESC);
    opts.addOption(OptionBuilder.create("C"));

    OptionBuilder.withArgName("prefix");
    OptionBuilder.hasArg();
    OptionBuilder.withDescription(OPT_UID_PREFIX_DESC);
    OptionBuilder.withLongOpt(LONG_OPT_UID_PREFIX);
    opts.addOption(OptionBuilder.create());

    OptionBuilder.withArgName("uid");
    OptionBuilder.hasArg();
    OptionBuilder.withDescription(OPT_TRANSFER_SYNTAX_DESC);
    OptionBuilder.withLongOpt(LONG_OPT_TRANSFER_SYNTAX);
    opts.addOption(OptionBuilder.create());

    opts.addOption(null, LONG_OPT_MPEG, false, OPT_MPEG_DESC);

    opts.addOption(null, LONG_OPT_NO_APPN, false, OPT_NO_APPN_DESC);

    opts.addOption("h", "help", false, OPT_HELP_DESC);
    opts.addOption("V", "version", false, OPT_VERSION_DESC);

    CommandLine cl = null;
    try {
        cl = new PosixParser().parse(opts, args);
    } catch (ParseException e) {
        exit("jpg2dcm: " + e.getMessage());
        throw new RuntimeException("unreachable");
    }
    if (cl.hasOption('V')) {
        Package p = Jpg2Dcm.class.getPackage();
        LOG.info("jpg2dcm v" + p.getImplementationVersion());
        System.exit(0);
    }
    if (cl.hasOption('h') || cl.getArgList().size() != 2) {
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp(USAGE, DESCRIPTION, opts, EXAMPLE);
        System.exit(0);
    }

    return cl;
}

From source file:org.dcm4che3.tool.movescu.MoveSCU.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    try {//  w  w w .ja  va2s  . com
        CommandLine cl = parseComandLine(args);
        MoveSCU main = new MoveSCU();
        CLIUtils.configureConnect(main.remote, main.rq, cl);
        CLIUtils.configureBind(main.conn, main.ae, cl);
        CLIUtils.configure(main.conn, cl);
        main.remote.setTlsProtocols(main.conn.getTlsProtocols());
        main.remote.setTlsCipherSuites(main.conn.getTlsCipherSuites());
        configureServiceClass(main, cl);
        configureKeys(main, cl);
        main.setPriority(CLIUtils.priorityOf(cl));
        main.setDestination(destinationOf(cl));
        ExecutorService executorService = Executors.newSingleThreadExecutor();
        ScheduledExecutorService scheduledExecutorService = Executors.newSingleThreadScheduledExecutor();
        main.device.setExecutor(executorService);
        main.device.setScheduledExecutor(scheduledExecutorService);
        try {
            main.open();
            List<String> argList = cl.getArgList();
            if (argList.isEmpty())
                main.retrieve();
            else
                for (String arg : argList)
                    main.retrieve(new File(arg));
        } finally {
            main.close();
            executorService.shutdown();
            scheduledExecutorService.shutdown();
        }
    } catch (ParseException e) {
        System.err.println("movescu: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (Exception e) {
        System.err.println("movescu: " + e.getMessage());
        e.printStackTrace();
        System.exit(2);
    }
}

From source file:org.dcm4che3.tool.mppsscu.MppsSCU.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    try {//from  www  .j  a v a2  s .co m
        CommandLine cl = parseComandLine(args);
        Device device = new Device("mppsscu");
        Connection conn = new Connection();
        device.addConnection(conn);
        ApplicationEntity ae = new ApplicationEntity("MPPSSCU");
        device.addApplicationEntity(ae);
        ae.addConnection(conn);
        final MppsSCU main = new MppsSCU(ae);
        configureMPPS(main, cl);
        CLIUtils.configureConnect(main.remote, main.rq, cl);
        CLIUtils.configureBind(conn, main.ae, cl);
        CLIUtils.configure(conn, cl);
        main.remote.setTlsProtocols(conn.getTlsProtocols());
        main.remote.setTlsCipherSuites(conn.getTlsCipherSuites());
        main.setTransferSyntaxes(CLIUtils.transferSyntaxesOf(cl));
        main.setAttributes(new Attributes());
        CLIUtils.addAttributes(main.attrs, cl.getOptionValues("s"));
        main.setUIDSuffix(cl.getOptionValue("uid-suffix"));
        List<String> argList = cl.getArgList();
        boolean echo = argList.isEmpty();
        if (!echo) {
            System.out.println(rb.getString("scanning"));
            main.scanFiles(argList, true);
        }
        ExecutorService executorService = Executors.newSingleThreadExecutor();
        ScheduledExecutorService scheduledExecutorService = Executors.newSingleThreadScheduledExecutor();
        device.setExecutor(executorService);
        device.setScheduledExecutor(scheduledExecutorService);
        try {
            main.open();
            if (echo)
                main.echo();
            else {
                main.createMpps();
                main.updateMpps();
            }
        } finally {
            main.close();
            executorService.shutdown();
            scheduledExecutorService.shutdown();
        }
    } catch (ParseException e) {
        System.err.println("mppsscu: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (Exception e) {
        System.err.println("mppsscu: " + e.getMessage());
        e.printStackTrace();
        System.exit(2);
    }
}

From source file:org.dcm4che3.tool.qc.QC.java

private static QC initArgs(CommandLine cl) throws MissingArgumentException, IndexOutOfBoundsException {

    String codeComponents = null;
    String parsedURL = (String) cl.getArgList().get(0);
    String operation = (String) cl.getArgList().get(1);

    if (cl.getArgList().size() > 2)
        codeComponents = (String) cl.getArgList().get(2);

    QC qc = new QC(parsedURL, codeComponents != null ? toCode(codeComponents) : null,
            QCOperation.valueOf(operation.toUpperCase()));

    if (cl.getArgList().size() > 3) {
        qc.setTargetStudyUID((String) cl.getArgList().get(3));
    }/*from   www.java  2 s . c o m*/

    return qc;
}

From source file:org.dcm4che3.tool.stowrs.StowRS.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    CommandLine cl = null;
    try {/*  w  ww  .  j a va 2 s  .  co m*/

        cl = parseComandLine(args);
        StowRS instance = new StowRS();
        if (cl.hasOption("m"))
            instance.keys = configureKeys(instance, cl);
        if (!cl.hasOption("u")) {
            throw new IllegalArgumentException("Missing url");
        } else {
            instance.URL = cl.getOptionValue("u");
        }

        if (cl.hasOption("t")) {
            if (!cl.hasOption("ts")) {
                throw new MissingArgumentException("Missing option required option ts when sending metadata");
            } else {
                instance.setTransferSyntax(cl.getOptionValue("ts"));
            }

            String mediaTypeString = cl.getOptionValue("t");
            if ("JSON".equalsIgnoreCase(mediaTypeString)) {
                instance.mediaType = StowMetaDataType.JSON;
            } else if ("XML".equalsIgnoreCase(mediaTypeString)) {
                instance.mediaType = StowMetaDataType.XML;
            } else {
                throw new IllegalArgumentException(
                        "Bad Type " + mediaTypeString + " specified for metadata, specify either XML or JSON");
            }
        } else {
            instance.mediaType = StowMetaDataType.NO_METADATA_DICOM;
        }

        for (Iterator<String> iter = cl.getArgList().iterator(); iter.hasNext();) {
            instance.files.add(new File(iter.next()));
        }

        if (instance.files.isEmpty())
            throw new IllegalArgumentException("Missing files");

        instance.stow();

    } catch (Exception e) {
        if (!cl.hasOption("u")) {
            LOG.error("stowrs: missing required option -u");
            LOG.error("Try 'stowrs --help' for more information.");
            System.exit(2);
        } else {
            LOG.error("Error: \n", e);
            e.printStackTrace();
        }

    }
}

From source file:org.dcm4che3.tool.syslog.Syslog.java

@SuppressWarnings("unchecked")
public static void main(String[] args) {
    try {//from   w w  w. j av  a  2  s .  c  o m
        CommandLine cl = parseComandLine(args);
        Syslog main = new Syslog();
        configureConnect(main.remote, cl);
        main.setProtocol(toProtocol(cl));
        configureAuditLogger(main.auditLogger, cl);
        main.setDelayBetweenMessages(CLIUtils.getIntOption(cl, "delay", 0));
        configureBind(main.conn, cl);
        CLIUtils.configure(main.conn, cl);
        try {
            main.init();
            main.sendFiles(cl.getArgList());
            main.waitForNoQueuedMessages();
        } finally {
            main.close();
        }
    } catch (ParseException e) {
        System.err.println("syslog: " + e.getMessage());
        System.err.println(rb.getString("try"));
        System.exit(2);
    } catch (Exception e) {
        System.err.println("syslog: " + e.getMessage());
        e.printStackTrace();
        System.exit(2);
    }
}

From source file:org.dcm4chee.xds2.src.tool.pnrsnd.PnRSnd.java

private void addDocument(CommandLine cl, PnRRequest pnrReq)
        throws FileNotFoundException, IOException, java.text.ParseException {
    @SuppressWarnings("unchecked")
    List<String> args = cl.getArgList();
    for (int i = 0, len = args.size(); i < len; i++) {
        String docUID = getProperty("doc.UID", i);
        if ("new()".equals(docUID)) {
            docUID = UIDUtils.createUID();
            log.info("### documentUID created:" + docUID);
        }//from   w w w  .  j  a v  a  2 s . co m
        File docFile = new File(args.get(i));
        byte[] buffer = new byte[(int) docFile.length()];
        FileInputStream fis = new FileInputStream(docFile);
        fis.read(buffer);
        DocumentEntry doc = pnrReq.addDocumentEntry(docUID, buffer, getProperty("mime", i));
        addAuthor(doc.addAuthor());
        doc.addConfidentialityCode(new Code(getProperty("confidentialityCode", i)));
        doc.addEventCodeList(new Code(getProperty("eventCode", i)));
        doc.setClassCode(new Code(getProperty("classCode", i)));
        doc.setFormatCode(new Code(getProperty("formatCode", i)));
        doc.setHealthcareFacilityTypeCode(new Code(getProperty("healthcareFacilityTypeCode", i)));
        doc.setPracticeSettingCode(new Code(getProperty("practiceSettingCode", i)));
        doc.setTypeCode(new Code(getProperty("typeCode", i)));
        doc.setCreationTime(Util.toDate(getProperty("creationTime", i)));
        doc.setServiceStartTime(Util.toDate(getProperty("serviceStartTime", i)));
        doc.setServiceStopTime(Util.toDate(getProperty("serviceStopTime", i)));
        doc.setLanguageCode(getProperty("languageCode", i));
        addOptional(doc);
    }
}

From source file:org.dcm4chee.xds2.src.tool.pnrsnd.PnRSnd.java

private static void showCodes(CommandLine cl) {
    @SuppressWarnings("unchecked")
    Collection<String> args = cl.getArgList();
    log.info("Show codes of affinity domain(s):" + args);
    XADCfgRepository rep = new XADCfgRepository(null, "../conf/affinitydomain");
    if (args.isEmpty() || args.contains("*")) {
        args = rep.getAffinityDomains();
    }//  w w  w.ja  v  a2s.  co  m
    for (String domain : args) {
        AffinityDomainCodes adCodes = rep.getAffinityDomainCodes(domain);
        log.info("  Affinity domain:" + domain + " (source:" + adCodes.getAffinityDomain() + "):");
        for (String codeType : adCodes.getCodeTypes()) {
            log.info("CodeType:" + codeType);
            for (Code c : adCodes.getCodes(codeType)) {
                log.info("    " + c);
            }
        }
    }
}

From source file:org.dfotos.rssfilter.App.java

/**
 * Execution begins here.//w ww  .  java 2  s . c o m
 * 
 * @param args Command-line arguments.
 * @throws IOException Something else went wrong.
 */
public static void main(final String[] args) throws IOException {
    String loggingConf = "/logging.properties";
    CommandLineParser parser = new PosixParser();
    Options options = new Options();
    initCmdLineOptions(options);
    CommandLine cmdLine;
    try {
        cmdLine = parser.parse(options, args);
    } catch (ParseException exp) {
        System.err.println(exp.getMessage());
        return;
    }
    if (cmdLine.hasOption("q")) {
        loggingConf = "/logging.q.properties";
    } else if (cmdLine.hasOption("v")) {
        loggingConf = "/logging.v.properties";
    }
    if (cmdLine.hasOption("h")) {
        printHelp(options);
        return;
    }
    if (cmdLine.hasOption("c")) {
        configFileName = cmdLine.getOptionValue("c");
    }
    LogHelper.initLogs(loggingConf);
    try {
        readConfig();
        getData().init();
        if (cmdLine.getArgList().isEmpty()) {
            printHelp(options);
        } else {
            for (final Object arg : cmdLine.getArgList()) {
                execCmd((String) arg);
            }
        }
    } catch (final Throwable ex) {
        LOG.log(Level.SEVERE, "", ex);
    } finally {
        final BeforeExit exit = new BeforeExit();
        try {
            exit.run(new ArrayList<String>(0));
        } catch (final Exception ex) {
            LOG.log(Level.SEVERE, "Exception running CleanupCmd: ", ex);
        }
    }
}