Example usage for org.apache.commons.io FilenameUtils removeExtension

List of usage examples for org.apache.commons.io FilenameUtils removeExtension

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Introduction

In this page you can find the example usage for org.apache.commons.io FilenameUtils removeExtension.

Prototype

public static String removeExtension(String filename)

Source Link

Document

Removes the extension from a filename.

Usage

From source file:com.jadarstudios.rankcapes.forge.cape.CapePack.java

/**
 * Loads a cape using the given InputStream.
 *
 * @param name       name to use with the created ResourceLocation.
 * @param imageInput input to a valid image file.
 *
 * @return a StaticCape instance.//from w ww.ja  v a 2 s. co  m
 *
 * @throws IOException
 */
public StaticCape loadCape(String name, InputStream imageInput) throws IOException {
    // removes extension just in case.
    name = FilenameUtils.removeExtension(name).trim();

    BufferedImage image = ImageIO.read(imageInput);

    return new StaticCape(name, image);
}

From source file:edu.cornell.med.icb.goby.util.SimulateBisulfiteReads.java

protected void process(DoubleList methylationRates, CharSequence segmentBases, int from, Writer writer)
        throws IOException {
    readLength = Math.min(segmentBases.length(), readLength);
    final String trueRateFilename = FilenameUtils.removeExtension(outputFilename) + "-true-methylation.tsv";
    final PrintWriter trueRateWriter = new PrintWriter(new FileWriter(trueRateFilename));
    if (bisulfiteTreatment) {
        writeTrueRatesBisulfite(methylationRates, segmentBases, from, trueRateWriter);
    } else {/* ww w.j a v a  2s. c  o  m*/
        writeTrueRatesMutations(methylationRates, segmentBases, from, trueRateWriter);
    }
    process(segmentBases, from, writer);
    writer.close();
}

From source file:jease.cms.service.Imports.java

private static File newFile(String filename, InputStream inputStream) throws IOException {
    File file = new File();
    file.setId(Filenames.asId(filename));
    file.setTitle(FilenameUtils.removeExtension(filename));
    file.setLastModified(new Date());
    file.setContentType(MimeTypes.guessContentTypeFromName(filename));
    copyStreamToFile(inputStream, file.getFile());
    return file;/*from   w w w . j ava 2 s .c  o  m*/
}

From source file:ca.phon.plugins.praat.TextGridManager.java

/**
 * Return the default textGrid file for the given session.
 * //from   w w  w  . j  a va2 s. c  o m
 * @param session
 */
public File defaultTextGridFile(Session session) {
    final String textGridFolder = textGridFolder(session.getCorpus(), session.getName());
    List<File> textGridFiles = textGridFilesForSession(session.getCorpus(), session.getName());

    final String mediaLocation = FilenameUtils.removeExtension(session.getMediaLocation());
    final File mediaFile = new File(mediaLocation);
    final File defaultTgFile = new File(textGridFolder, mediaFile.getName() + TEXTGRID_EXT);
    if (textGridFiles.contains(defaultTgFile)) {
        return defaultTgFile;
    }

    // try session name
    final File backupTgFile = new File(textGridFolder, session.getName() + TEXTGRID_EXT);
    if (textGridFiles.contains(backupTgFile)) {
        return backupTgFile;
    }

    // finally return the first file found
    if (textGridFiles.size() > 0) {
        return textGridFiles.get(0);
    }

    return null;
}

From source file:edu.cornell.med.icb.goby.stats.AnnotationAveragingWriter.java

public AnnotationAveragingWriter(final OutputInfo outputInfo, RandomAccessSequenceInterface genome,
        MethylCountProvider provider) {//ww  w  . java  2 s.co  m
    super(new NullWriter());
    String contextString = doc.getString("contexts");
    String[] contextTokens = contextString.split(",");
    if (contextTokens.length != 0) {
        LOG.info("registering user defined contexts: " + ObjectArrayList.wrap(contextTokens));
        contexts = contextTokens;
    }
    estimateIntraGroupDifferences = doc.getBoolean("estimate-intra-group-differences");
    estimateIntraGroupP = doc.getBoolean("estimate-empirical-P");
    writeCounts = doc.getBoolean("write-counts");
    writeObservations = doc.getBoolean("write-observations");

    if (estimateIntraGroupDifferences || estimateIntraGroupP) {
        String basename = FilenameUtils.removeExtension(outputInfo.getFilename());
        if (basename == null) {
            basename = Long.toString(new Date().getTime());
        }
        if (writeObservations) {
            String filename = basename + "-" + (estimateIntraGroupDifferences ? "null" : "test")
                    + "-observations.tsv";
            try {
                obsWriter = new ObservationWriter(new FileWriter(filename));
                obsWriter.setHeaderIds(
                        new String[] { "context", "chromosome", "start", "end", "annotation-id" });
            } catch (IOException e) {
                LOG.error("Cannot open observation file for writing: " + filename);
            }

        }
    }

    this.provider = provider;
    this.outputInfo = outputInfo;
    if (!estimateIntraGroupDifferences) {
        outputWriter = outputInfo.getPrintWriter();
    } else {
        outputWriter = new NullWriter();
    }
    this.genome = genome;
    initialized = false;
    processGroups = true;

}

From source file:de.teamgrit.grit.preprocess.IliasPreprocessor.java

/**
 * Sets the Students name and mail according to his submission.
 * /*from  w w  w.jav a2s  .c o  m*/
 * @param studentData
 *            the Student
 * @param studentSubmission
 *            his Submission
 * @param studentSubmissions
 *            the map storing the students and their submissions
 */
private static void setSubmitted(StudentRepoData studentData, Submission studentSubmission,
        Map<Student, Submission> studentSubmissions) {

    String downloadedFile = FilenameUtils
            .removeExtension(Paths.get(studentData.getSubmissionPath()).getFileName().toString());

    String studentFile = studentSubmission.getSourceCodeLocation().getFileName().toString();

    if (studentFile.equals(downloadedFile)) {
        Student student = studentSubmission.getStudent();
        student.setName(studentData.getFirstName() + " " + studentData.getLastName());
        student.setEmail(studentData.getEmail());
        studentSubmissions.put(student, studentSubmission);
    }
}

From source file:com.door43.translationstudio.SettingsActivity.java

/**
 * Shows the simplified settings UI if the device configuration if the
 * device configuration dictates that a simplified, single-pane UI should be
 * shown.// w  ww  . j ava  2 s  . c o m
 */
private void setupSimplePreferencesScreen() {
    if (!isSimplePreferences(this)) {
        return;
    }

    // In the simplified UI, fragments are not used at all and we instead
    // use the older PreferenceActivity APIs.

    // Add 'general' preferences.
    addPreferencesFromResource(R.xml.general_preferences);

    // NOTE: this is a copy paste from GeneralPreferenceFragment
    // identify all typefaces in the assets directory
    AssetManager am = getResources().getAssets();
    String fileList[] = null;
    ArrayList<String> entries = new ArrayList<String>();
    ArrayList<String> entryValues = new ArrayList<String>();
    try {
        fileList = am.list("fonts");
    } catch (IOException e) {
        Logger.e(this.getClass().getName(), "failed to load font assets", e);
    }
    if (fileList != null) {
        for (int i = 0; i < fileList.length; i++) {
            File typeface = AppContext.context().getAssetAsFile("fonts/" + fileList[i]);
            if (typeface != null) {
                TTFAnalyzer analyzer = new TTFAnalyzer();
                String fontname = "";
                fontname = analyzer.getTtfFontName(typeface.getAbsolutePath());
                if (fontname == null) {
                    fontname = FilenameUtils.removeExtension(typeface.getName());
                }
                entries.add(fontname);
                entryValues.add(fileList[i]);
            }
        }
    }

    ListPreference pref = (ListPreference) findPreference(KEY_PREF_TRANSLATION_TYPEFACE);
    pref.setEntries(entries.toArray(new CharSequence[entries.size()]));
    pref.setEntryValues(entryValues.toArray(new CharSequence[entryValues.size()]));
    bindPreferenceSummaryToValue(pref);

    // Add 'sharing' preferences, and a corresponding header.
    //        PreferenceCategory preferenceHeader = new PreferenceCategory(this);
    //        preferenceHeader.setTitle(R.string.pref_header_sharing);
    //        getPreferenceScreen().addPreference(preferenceHeader);
    //        addPreferencesFromResource(R.xml.sharing_preferences);

    // Add 'server' preferences, and a corresponding header.
    PreferenceCategory preferenceHeader = new PreferenceCategory(this);
    preferenceHeader.setTitle(R.string.pref_header_synchronization);
    getPreferenceScreen().addPreference(preferenceHeader);
    addPreferencesFromResource(R.xml.server_preferences);

    // Add 'legal' preferences, and a corresponding header.
    preferenceHeader = new PreferenceCategory(this);
    preferenceHeader.setTitle(R.string.pref_header_legal);
    getPreferenceScreen().addPreference(preferenceHeader);
    addPreferencesFromResource(R.xml.legal_preferences);

    // add 'advanced' preferences and coresponding hreader
    preferenceHeader = new PreferenceCategory(this);
    preferenceHeader.setTitle(R.string.pref_header_advanced);
    getPreferenceScreen().addPreference(preferenceHeader);
    addPreferencesFromResource(R.xml.advanced_preferences);

    // bind the correct legal document to the preference intent
    bindPreferenceClickToLegalDocument(findPreference("license_agreement"), R.string.license);
    bindPreferenceClickToLegalDocument(findPreference("statement_of_faith"), R.string.statement_of_faith);
    bindPreferenceClickToLegalDocument(findPreference("translation_guidelines"),
            R.string.translation_guidlines);
    bindPreferenceClickToLegalDocument(findPreference("software_licenses"), R.string.software_licenses);

    // Bind the summaries of EditText/List/Dialog/Ringtone preferences to
    // their values. When their values change, their summaries are updated
    // to reflect the new value, per the Android Design guidelines.
    //        bindPreferenceSummaryToValue(findPreference(KEY_PREF_AUTOSAVE));
    bindPreferenceSummaryToValue(findPreference(KEY_PREF_AUTH_SERVER));
    bindPreferenceSummaryToValue(findPreference(KEY_PREF_GIT_SERVER));
    bindPreferenceSummaryToValue(findPreference(KEY_PREF_AUTH_SERVER_PORT));
    bindPreferenceSummaryToValue(findPreference(KEY_PREF_GIT_SERVER_PORT));
    //        bindPreferenceSummaryToValue(findPreference(KEY_PREF_EXPORT_FORMAT));
    bindPreferenceSummaryToValue(findPreference(KEY_PREF_MEDIA_SERVER));
    bindPreferenceSummaryToValue(findPreference(KEY_PREF_LOGGING_LEVEL));
    bindPreferenceSummaryToValue(findPreference(KEY_PREF_BACKUP_INTERVAL));
    bindPreferenceSummaryToValue(findPreference(KEY_PREF_TYPEFACE_SIZE));
}

From source file:com.doplgangr.secrecy.UpdateManager.UpdateManager.java

@Background
void version32to40() {
    //walks the whole file tree, find out files that do not have encoded file names
    //and encode them.
    Collection files = FileUtils.listFiles(storage.getRoot(), TrueFileFilter.INSTANCE, TrueFileFilter.INSTANCE);
    for (Object file : files) {
        File realFile = (File) file;
        String fileName = FilenameUtils.removeExtension(realFile.getName());
        fileName = fileName.replace("_thumb", "");
        if (".nomedia".equals(fileName))
            continue;
        try {//from  w  ww  .  jav  a 2 s  .c o m
            Base64Coder.decodeString(fileName);
        } catch (IllegalArgumentException e) {
            String encodedFileName = Base64Coder.encodeString(fileName);
            fileName = realFile.getAbsolutePath().replace(fileName, encodedFileName);
            Boolean ignored = realFile.renameTo(new File(fileName));
        }
    }
    onFinishAllUpgrade();
}

From source file:com.esri.geoevent.test.performance.ui.ReportOptionsController.java

/**
 * Toggles the report type and updates the UI state.
 *
 * @param event {@link ActionEvent} not used
 *///from   ww w  .  j av  a 2  s. c  o m
@FXML
public void toggleReportType(final ActionEvent event) {
    if (report.getType() != reportType.getValue()) {
        report.setType(reportType.getValue());
        String newFileName = FilenameUtils.removeExtension(report.getReportFile()) + "."
                + report.getType().toString().toLowerCase();
        updateSelectedReportFile(newFileName);
    }
}

From source file:de.tudarmstadt.ukp.clarin.webanno.webapp.remoteapi.RemoteApiController.java

/**
 * Create a new project.//from   w w  w . j av a2 s .  c om
 *
 * To test, use the Linux "curl" command.
 *
 * curl -v -F 'file=@test.zip' -F 'name=Test' -F 'filetype=tcf'
 * 'http://USERNAME:PASSWORD@localhost:8080/de.tudarmstadt.ukp.clarin.webanno.webapp/api/project
 * '
 *
 * @param aName
 *            the name of the project to create.
 * @param aFileType
 *            the type of the files contained in the ZIP. The possible file types are configured
 *            in the formats.properties configuration file of WebAnno.
 * @param aFile
 *            a ZIP file containing the project data.
 * @throws Exception if there was en error.
 */
@RequestMapping(value = "/project", method = RequestMethod.POST, consumes = MediaType.MULTIPART_FORM_DATA_VALUE)
public @ResponseStatus(HttpStatus.NO_CONTENT) void createProject(@RequestParam("file") MultipartFile aFile,
        @RequestParam("name") String aName, @RequestParam("filetype") String aFileType) throws Exception {
    LOG.info("Creating project [" + aName + "]");

    if (!ZipUtils.isZipStream(aFile.getInputStream())) {
        throw new InvalidFileNameException("", "is an invalid Zip file");
    }

    // Get current user
    String username = SecurityContextHolder.getContext().getAuthentication().getName();
    User user = userRepository.get(username);
    Project project = null;

    // Configure project
    if (!projectRepository.existsProject(aName)) {
        project = new Project();
        project.setName(aName);

        // Create the project and initialize tags
        projectRepository.createProject(project, user);
        annotationService.initializeTypesForProject(project, user, new String[] {}, new String[] {},
                new String[] {}, new String[] {}, new String[] {}, new String[] {}, new String[] {},
                new String[] {});
        // Create permission for this user
        ProjectPermission permission = new ProjectPermission();
        permission.setLevel(PermissionLevel.ADMIN);
        permission.setProject(project);
        permission.setUser(username);
        projectRepository.createProjectPermission(permission);

        permission = new ProjectPermission();
        permission.setLevel(PermissionLevel.USER);
        permission.setProject(project);
        permission.setUser(username);
        projectRepository.createProjectPermission(permission);
    }
    // Existing project
    else {
        throw new IOException("The project with name [" + aName + "] exists");
    }

    // Iterate through all the files in the ZIP

    // If the current filename does not start with "." and is in the root folder of the ZIP,
    // import it as a source document
    File zimpFile = File.createTempFile(aFile.getOriginalFilename(), ".zip");
    aFile.transferTo(zimpFile);
    ZipFile zip = new ZipFile(zimpFile);

    for (Enumeration<?> zipEnumerate = zip.entries(); zipEnumerate.hasMoreElements();) {
        //
        // Get ZipEntry which is a file or a directory
        //
        ZipEntry entry = (ZipEntry) zipEnumerate.nextElement();

        // If it is the zip name, ignore it
        if ((FilenameUtils.removeExtension(aFile.getOriginalFilename()) + "/").equals(entry.toString())) {
            continue;
        }
        // IF the current filename is META-INF/webanno/source-meta-data.properties store it
        // as
        // project meta data
        else if (entry.toString().replace("/", "")
                .equals((META_INF + "webanno/source-meta-data.properties").replace("/", ""))) {
            InputStream zipStream = zip.getInputStream(entry);
            projectRepository.savePropertiesFile(project, zipStream, entry.toString());

        }
        // File not in the Zip's root folder OR not
        // META-INF/webanno/source-meta-data.properties
        else if (StringUtils.countMatches(entry.toString(), "/") > 1) {
            continue;
        }
        // If the current filename does not start with "." and is in the root folder of the
        // ZIP, import it as a source document
        else if (!FilenameUtils.getExtension(entry.toString()).equals("")
                && !FilenameUtils.getName(entry.toString()).equals(".")) {

            uploadSourceDocument(zip, entry, project, user, aFileType);
        }

    }

    LOG.info("Successfully created project [" + aName + "] for user [" + username + "]");

}