Example usage for org.apache.commons.io FilenameUtils removeExtension

List of usage examples for org.apache.commons.io FilenameUtils removeExtension

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Introduction

In this page you can find the example usage for org.apache.commons.io FilenameUtils removeExtension.

Prototype

public static String removeExtension(String filename)

Source Link

Document

Removes the extension from a filename.

Usage

From source file:com.collaide.fileuploader.requests.repository.RepositoryRequest.java

private void unzip(File source, File destination) {
    //        try {
    String finalDestionation = new File(destination, FilenameUtils.removeExtension(source.getName()))
            .getAbsolutePath();/*from w  w  w. j  a  v  a2  s.  c  o  m*/
    logger.debug("source: " + source.getAbsolutePath());
    logger.debug("destination: " + finalDestionation);
    try {
        ZipFile zipFile = new ZipFile(source);
        zipFile.extractAll(finalDestionation);
    } catch (ZipException ex) {
        logger.error("error while unzipping: " + ex);
    }
    //            destination.mkdirs();
    //            FileSystemManager fileManager = VFS.getManager();
    //            FileObject fileObject = fileManager.resolveFile(source.getAbsolutePath());
    //            FileObject zipFile = fileManager.createFileSystem(fileObject);
    //            fileManager.toFileObject(destination).copyFrom(zipFile, new AllFileSelector());
    //            zipFile.close();
    //            fileObject.close();
    //
    //        } catch (FileSystemException ex) {
    //            logger.error("error while unzipping: " + ex);
    //        }
}

From source file:com.qwazr.compiler.JavaCompiler.java

private Collection<File> filterUptodate(File parentDir, File[] javaSourceFiles) {
    if (javaSourceFiles == null)
        return null;
    final Collection<File> finalJavaFiles = new ArrayList<File>();
    if (javaSourceFiles.length == 0)
        return finalJavaFiles;
    final File parentClassDir = new File(javaClassesDirectory,
            parentDir.getAbsolutePath().substring(javaSourcePrefixSize));
    for (File javaSourceFile : javaSourceFiles) {
        final File classFile = new File(parentClassDir,
                FilenameUtils.removeExtension(javaSourceFile.getName()) + ".class");
        if (classFile.exists() && classFile.lastModified() > javaSourceFile.lastModified())
            continue;
        finalJavaFiles.add(javaSourceFile);
    }//from  ww w .j av  a2  s.  c o  m
    return finalJavaFiles;
}

From source file:com.vvote.verifierlibrary.utils.io.IOUtils.java

/**
 * Gets the name of a file without the extension
 * //  w  w w  .  j av a  2 s  .  c o  m
 * @param filename
 * @return the name of a file without the extension
 */
public static String getFileNameWithoutExtension(String filename) {
    return FilenameUtils.removeExtension(new File(filename).getName());
}

From source file:io.github.swagger2markup.Swagger2MarkupMojo.java

private String extractSwaggerFileNameWithoutExtension(Swagger2MarkupConverter converter) {
    return FilenameUtils.removeExtension(new File(converter.getContext().getSwaggerLocation()).getName());
}

From source file:ml.hsv.java

public static fileData[] batchColorFeatureBuilder(String ip, int N, int C_h, int C_s, int C_v, File trainFile,
        File fileInputList, int cellDimension) throws IOException {
    //get array of all files 

    File ipFiles = new File(ip);

    File allImages[] = ipFiles.listFiles();
    int nImages = allImages.length;
    fileData allImageData[] = new fileData[nImages];

    FileWriter op = new FileWriter(trainFile.toString());
    FileWriter op2 = new FileWriter(fileInputList.toString());

    for (int i = 0; i < nImages; i++) {
        //System.out.print("On file number :"+(i+1)+", "+allImages[i].getName() + "\n");

        String fileNameWithOutExt = FilenameUtils.removeExtension(allImages[i].getName());

        op2.write(fileNameWithOutExt + "\n");
        op2.flush();//  ww  w .  jav  a  2  s  .c om

        //System.out.println(allImages[i].getName());
        if (allImages[i].getName().contains("cat")) //1=dog, 0=cat, -1=unknown
        {
            allImageData[i] = new fileData(0, colorFeatureBuilder(img2RGB2HSV(new File(allImages[i].toURI())),
                    N, C_h, C_s, C_v, cellDimension));
        } else if (allImages[i].getName().contains("dog")) {
            allImageData[i] = new fileData(1, colorFeatureBuilder(img2RGB2HSV(new File(allImages[i].toURI())),
                    N, C_h, C_s, C_v, cellDimension));
        } else if (allImages[i].getName().contains("airplane")) {
            allImageData[i] = new fileData(2, colorFeatureBuilder(img2RGB2HSV(new File(allImages[i].toURI())),
                    N, C_h, C_s, C_v, cellDimension));
        } else if (allImages[i].getName().contains("automobile")) {
            allImageData[i] = new fileData(3, colorFeatureBuilder(img2RGB2HSV(new File(allImages[i].toURI())),
                    N, C_h, C_s, C_v, cellDimension));
        } else if (allImages[i].getName().contains("bird")) {
            allImageData[i] = new fileData(4, colorFeatureBuilder(img2RGB2HSV(new File(allImages[i].toURI())),
                    N, C_h, C_s, C_v, cellDimension));
        } else if (allImages[i].getName().contains("deer")) {
            allImageData[i] = new fileData(5, colorFeatureBuilder(img2RGB2HSV(new File(allImages[i].toURI())),
                    N, C_h, C_s, C_v, cellDimension));
        } else if (allImages[i].getName().contains("frog")) {
            allImageData[i] = new fileData(6, colorFeatureBuilder(img2RGB2HSV(new File(allImages[i].toURI())),
                    N, C_h, C_s, C_v, cellDimension));
        } else if (allImages[i].getName().contains("horse")) {
            allImageData[i] = new fileData(7, colorFeatureBuilder(img2RGB2HSV(new File(allImages[i].toURI())),
                    N, C_h, C_s, C_v, cellDimension));
        } else if (allImages[i].getName().contains("ship")) {
            allImageData[i] = new fileData(8, colorFeatureBuilder(img2RGB2HSV(new File(allImages[i].toURI())),
                    N, C_h, C_s, C_v, cellDimension));
        } else if (allImages[i].getName().contains("truck")) {
            allImageData[i] = new fileData(9, colorFeatureBuilder(img2RGB2HSV(new File(allImages[i].toURI())),
                    N, C_h, C_s, C_v, cellDimension));
        }

        //store intermed. results start here
        StringBuffer ip2 = new StringBuffer();
        ip2.append(allImageData[i].type);
        for (int j = 0; j < allImageData[i].colorFeatureVector.size(); j++) {
            if (allImageData[i].colorFeatureVector.get(j)) {
                ip2.append(" " + (j + 1) + ":1");
            }
        }
        ip2.append("\n");
        op.write(ip2.toString());
        op.flush();
        //end intermed. results
    }

    op.close();
    op2.close();
    return allImageData;
}

From source file:main.BasicGenSystemTest.java

/**
 * Test the generation of report by constellation.
 *//* w w w  .  j  av  a  2  s  . c o m*/
@Test
public void testGeneratedReportByConstellation() {
    System.out.println("Running test " + this.getClass().getSimpleName() + "." + new Object() {
    }.getClass().getEnclosingMethod().getName());

    // tex + pdf
    assertTrue(new File(config.getProperty(AJPropertyConstants.FILES_LOCATION.getKey()) + File.separator
            + config.getProperty(AJPropertyConstants.LATEX_REPORT_BY_CONSTELLATION_FILENAME.getKey()))
                    .exists());
    assertTrue(new File(config.getProperty(AJPropertyConstants.FILES_LOCATION.getKey()) + File.separator
            + FilenameUtils.removeExtension(
                    config.getProperty(AJPropertyConstants.LATEX_REPORT_BY_CONSTELLATION_FILENAME.getKey()))
            + ".pdf").exists());
}

From source file:MSUmpire.SpectrumParser.SpectrumParserBase.java

protected boolean FSElutionIndexRead() throws NumberFormatException, FileNotFoundException, IOException {
    if (!new File(FilenameUtils.removeExtension(filename) + ".RTidxFS").exists()) {
        return false;
    }/*from  w w  w.  ja  v a  2s . co m*/
    if (!new File(FilenameUtils.removeExtension(filename) + ".ScanRTFS").exists()) {
        return false;
    }
    if (!new File(FilenameUtils.removeExtension(filename) + ".ScanidxFS").exists()) {
        return false;
    }
    try {
        Logger.getRootLogger()
                .debug("Reading RTidx:" + FilenameUtils.removeExtension(filename) + ".RTidxFS...");
        FileInputStream fileIn = new FileInputStream(FilenameUtils.removeExtension(filename) + ".RTidxFS");
        FSTObjectInput in = new FSTObjectInput(fileIn);
        ElutionTimeToScanNoMap = (TreeMap<Float, Integer>) in.readObject();
        //scanCollection.ElutionTimeToScanNoMap = ElutionTimeToScanNoMap;
        in.close();
        fileIn.close();
    } catch (Exception ex) {
        //i.printStackTrace();
        Logger.getRootLogger().debug("RTidxFS serialization file failed");
        //Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return false;
    }

    try {
        Logger.getRootLogger()
                .debug("Reading ScanRT:" + FilenameUtils.removeExtension(filename) + ".ScanRTFS...");
        FileInputStream fileIn = new FileInputStream(FilenameUtils.removeExtension(filename) + ".ScanRTFS");
        FSTObjectInput in = new FSTObjectInput(fileIn);
        //            ScanToElutionTime = (HashMap<Integer, Float>) in.readObject();
        ScanToElutionTime = (IntFloatHashMap) in.readObject();
        in.close();
        fileIn.close();
    } catch (Exception ex) {
        //i.printStackTrace();
        Logger.getRootLogger().debug("ScanRTFS serialization file failed");
        //Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        throw new RuntimeException(ex);
    }

    try {
        Logger.getRootLogger()
                .debug("Reading Scanidx:" + FilenameUtils.removeExtension(filename) + ".ScanidxFS...");
        FileInputStream fileIn = new FileInputStream(FilenameUtils.removeExtension(filename) + ".ScanidxFS");
        FSTObjectInput in = new FSTObjectInput(fileIn);
        MsLevelList = (TreeMap<Integer, Integer>) in.readObject();
        for (int value : MsLevelList.values()) {
            if (value == 1) {
                NoMS1Scans++;
            }
        }
        in.close();
        fileIn.close();
    } catch (Exception ex) {
        //i.printStackTrace();
        Logger.getRootLogger().debug("ScanidxFS serialization file failed");
        //Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return false;
    }

    if (datatype != SpectralDataType.DataType.DDA) {
        if (!new File(FilenameUtils.removeExtension(filename) + ".DIAWindowsFS").exists()) {
            return false;
        }
        try {
            Logger.getRootLogger().debug(
                    "Reading DIAWindows:" + FilenameUtils.removeExtension(filename) + ".DIAWindowsFS...");
            FileInputStream fileIn = new FileInputStream(
                    FilenameUtils.removeExtension(filename) + ".DIAWindowsFS");
            FSTObjectInput in = new FSTObjectInput(fileIn);
            dIA_Setting.DIAWindows = (TreeMap<XYData, ArrayList<Integer>>) in.readObject();
            in.close();
            fileIn.close();
        } catch (Exception ex) {
            //i.printStackTrace();
            Logger.getRootLogger().debug("DIAWindowsFS serialization file failed");
            //Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
            return false;
        }
    }

    if (datatype == SpectralDataType.DataType.WiSIM) {
        if (!new File(FilenameUtils.removeExtension(filename) + ".MS1WindowsFS").exists()) {
            return false;
        }
        try {
            Logger.getRootLogger().debug(
                    "Reading MS1 Windows:" + FilenameUtils.removeExtension(filename) + ".MS1WindowsFS...");
            FileInputStream fileIn = new FileInputStream(
                    FilenameUtils.removeExtension(filename) + ".MS1WindowsFS");
            FSTObjectInput in = new FSTObjectInput(fileIn);
            dIA_Setting.MS1Windows = (TreeMap<XYData, ArrayList<Integer>>) in.readObject();
            in.close();
            fileIn.close();
        } catch (Exception ex) {
            //i.printStackTrace();
            Logger.getRootLogger().debug("MS1WindowsFS serialization file failed");
            //Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
            return false;
        }
    }
    return true;
}

From source file:com.vvote.verifierlibrary.utils.io.IOUtils.java

/**
 * Gets a file path not including the extension of the file
 * /*from   w ww .  j a v a 2 s  .  co m*/
 * @param filename
 * @return file path without the extension of the file
 */
public static String getFilePathWithoutExtension(String filename) {
    return FilenameUtils.removeExtension(new File(filename).getPath());
}

From source file:gov.nih.nci.firebird.test.FirebirdFileFactory.java

public FirebirdFile create(String fullyQualifiedResourcePath) {
    FirebirdFile firebirdFile = create(new byte[0]);
    firebirdFile.setByteDataSource(new ClasspathResource(fullyQualifiedResourcePath));
    String resourceBaseName = new File(fullyQualifiedResourcePath).getName();
    if (fullyQualifiedResourcePath.endsWith(".gz")) {
        firebirdFile.setName(FilenameUtils.removeExtension(resourceBaseName));
    } else {//from   w ww  .  j  a v a  2  s. c o  m
        firebirdFile.setName(resourceBaseName);
    }
    return firebirdFile;
}

From source file:de.teamgrit.grit.checking.compile.HaskellCompileChecker.java

/**
 * checkProgram invokes the Haskell compiler on a given file and reports
 * the output.//from   ww w.j  a v a2  s.  c om
 * 
 * @param pathToProgramFile
 *            Specifies the file or folder containing that should be
 *            compiled. (accepts .lhs and .hs files)
 * @param compilerName
 *            The compiler to be used (usually ghc).
 * @param compilerFlags
 *            Additional flags to be passed to the compiler.
 * @throws FileNotFoundException
 *             Is thrown when the file in pathToProgramFile cannot be
 *             opened
 * @throws BadCompilerSpecifiedException
 *             Is thrown when the given compiler cannot be called
 * @return A {@link CompilerOutput} that contains all compiler messages and
 *         flags on how the compile run went.
 * @throws BadFlagException
 *             When ghc doesn't recognize a flag, this exception is thrown.
 */
@Override
public CompilerOutput checkProgram(Path pathToProgramFile, String compilerName, List<String> compilerFlags)
        throws FileNotFoundException, BadCompilerSpecifiedException, BadFlagException {

    Process compilerProcess = null;

    try {
        // create compiler invocation.
        List<String> compilerInvocation = createCompilerInvocation(pathToProgramFile, compilerName,
                compilerFlags);

        ProcessBuilder compilerProcessBuilder = new ProcessBuilder(compilerInvocation);

        // make sure the compiler stays in its directory.
        compilerProcessBuilder.directory(pathToProgramFile.getParent().toFile());

        compilerProcess = compilerProcessBuilder.start();
        // this will never happen because createCompilerInvocation never
        // throws this Exception. Throw declaration needs to be in method
        // declaration because of the implemented Interface although we
        // never use it in the HaskellCompileChecker
    } catch (CompilerOutputFolderExistsException e) {
        LOGGER.severe("A problem while compiling, which never should happen, occured" + e.getMessage());
    } catch (BadCompilerSpecifiedException e) {
        throw new BadCompilerSpecifiedException(e.getMessage());
    } catch (IOException e) {

        // If we cannot call the compiler we return a CompilerOutput
        // initialized with false, false, indicating
        // that the compiler wasn't invoked properly and that there was no
        // clean Compile.
        CompilerOutput compilerInvokeError = new CompilerOutput();
        compilerInvokeError.setClean(false);
        compilerInvokeError.setCompilerInvoked(false);
        return compilerInvokeError;
    }

    // Now we read compiler output. If everything is ok ghc reports
    // nothing in the errorStream.
    InputStream compilerOutputStream = compilerProcess.getErrorStream();
    InputStreamReader compilerStreamReader = new InputStreamReader(compilerOutputStream);
    BufferedReader compilerOutputBuffer = new BufferedReader(compilerStreamReader);
    String line;

    CompilerOutput compilerOutput = new CompilerOutput();
    compilerOutput.setCompilerInvoked(true);

    List<String> compilerOutputLines = new LinkedList<>();

    try {
        while ((line = compilerOutputBuffer.readLine()) != null) {
            compilerOutputLines.add(line);
        }
        // Errors are separated via an empty line (""). But after the
        // the last error the OutputBuffer has nothing more to write.
        // In order to recognize the last error we insert an empty String
        // at the end of the list.
        // Only needs to be done when there are errors.
        if (compilerOutputLines.size() != 0) {
            line = "";
            compilerOutputLines.add(line);
        }

        compilerOutputStream.close();
        compilerStreamReader.close();
        compilerOutputBuffer.close();
        compilerProcess.destroy();

    } catch (IOException e) {

        // Reading might go wrong here if ghc should unexpectedly die
        LOGGER.severe("Error while reading from compiler stream.");
        compilerOutput.setClean(false);
        compilerOutput.setCompileStreamBroken(true);
        return compilerOutput;
    }

    // ghc -c generates a .o(object) and a .hi(haskell interface) file.
    // But we don't need those files so they can be deleted.
    // The generated files have the same name like our input file so we
    // can just exchange the file endings in order to get the
    // correct file paths for deletion
    if (Files.isDirectory(pathToProgramFile, LinkOption.NOFOLLOW_LINKS)) {

        // we use a file walker in order to find all files in the folder
        // and its subfolders
        RegexDirectoryWalker dirWalker = new RegexDirectoryWalker(".+\\.([Ll])?[Hh][Ss]");
        try {
            Files.walkFileTree(pathToProgramFile, dirWalker);
        } catch (IOException e) {
            LOGGER.severe("Could not walk submission " + pathToProgramFile.toString()
                    + " while building copiler invocation: " + e.getMessage());
        }

        for (Path candidatePath : dirWalker.getFoundFiles()) {
            File candidateFile = candidatePath.toFile();
            if (!candidateFile.isDirectory()) {
                String extension = FilenameUtils.getExtension(candidateFile.toString());
                if (extension.matches("[Ll]?[Hh][Ss]")) {
                    File ghcGeneratedObject = new File(
                            FilenameUtils.removeExtension(candidateFile.toString()) + ".o");
                    File ghcGeneratedInterface = new File(
                            FilenameUtils.removeExtension(candidateFile.toString()) + ".hi");
                    ghcGeneratedObject.delete();
                    ghcGeneratedInterface.delete();
                }
            }
        }
    } else {
        String extension = FilenameUtils.getExtension(pathToProgramFile.toString());
        if (extension.matches("[Ll]?[Hh][Ss]")) {
            File ghcGeneratedObject = new File(
                    FilenameUtils.removeExtension(pathToProgramFile.toString()) + ".o");
            File ghcGeneratedInterface = new File(
                    FilenameUtils.removeExtension(pathToProgramFile.toString()) + ".hi");
            ghcGeneratedObject.delete();
            ghcGeneratedInterface.delete();
        }

    }

    // if there are no errors there is no Output to handle
    if (compilerOutputLines.size() != 0) {
        compilerOutput = splitCompilerOutput(compilerOutputLines, compilerOutput);
    } else {
        compilerOutput.setClean(true);
    }
    return compilerOutput;
}