Example usage for org.apache.commons.io FilenameUtils removeExtension

List of usage examples for org.apache.commons.io FilenameUtils removeExtension

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Introduction

In this page you can find the example usage for org.apache.commons.io FilenameUtils removeExtension.

Prototype

public static String removeExtension(String filename)

Source Link

Document

Removes the extension from a filename.

Usage

From source file:importToNewTable.createDataJob.java

public void importData(String filePath, String[] selectedFamilies, String[] keys) throws Exception {

    //Use family class get columns names.
    family familyName = new family();
    String[] column = familyName.columnfamily(filePath);
    //Get input file name to be used as table name.
    File f = new File(filePath);
    String fname = f.getName();/*from   w  w  w.j ava 2 s .com*/
    String vcfName = FilenameUtils.removeExtension(fname);

    createTable ht = new createTable();
    ht.table(vcfName, column, selectedFamilies);

    //Mapreduce job.
    Configuration conf = new Configuration();
    conf.setStrings("column", column);
    conf.setStrings("keys", keys);
    conf.setStrings("selectedFamilies", selectedFamilies);
    conf.set("tableName", vcfName);
    Job job = Job.getInstance(conf, "VCF");
    job.setJarByClass(importToNewTable.createDataJob.class);
    job.setMapperClass(importToNewTable.createDataMapper.class);

    job.setReducerClass(org.apache.hadoop.hbase.mapreduce.PutSortReducer.class);

    // TODO: specify output types
    job.setMapOutputKeyClass(ImmutableBytesWritable.class);
    job.setMapOutputValueClass(Put.class);
    job.setOutputFormatClass(HFileOutputFormat.class);

    // TODO: specify input and output DIRECTORIES (not files)
    FileInputFormat.setInputPaths(job, new Path(filePath));
    File temp = new File("/tmp/HVCF/output");
    this.deleteDir(temp);
    FileOutputFormat.setOutputPath(job, new Path("/tmp/HVCF/output"));

    Configuration hbconf = HBaseConfiguration.create();
    HTable table = new HTable(hbconf, vcfName);
    HFileOutputFormat.configureIncrementalLoad(job, table);

    if (!job.waitForCompletion(true)) {
        return;
    }

    //Bulkload Hfiles into HBase table.
    LoadIncrementalHFiles loader = new LoadIncrementalHFiles(hbconf);
    loader.doBulkLoad(new Path("/tmp/HVCF/output"), table);

}

From source file:de.tsystems.mms.apm.performancesignature.util.PerfSigUIUtils.java

public static String removeExtension(final String fileName) {
    return FilenameUtils.removeExtension(fileName);
}

From source file:asciidoc.maven.plugin.tools.ZipHelper.java

public File unzipEntry(File _zipFile, String _name) {
    File directory = null;//from   www  .  j  a v a  2  s.  co  m
    try {
        if (this.log.isDebugEnabled())
            this.log.debug("zip file: " + _zipFile.getAbsolutePath());
        ZipEntry zipEntry = null;
        String zipEntryName = null;
        ZipFile jarZipFile = new ZipFile(_zipFile);
        Enumeration<? extends ZipEntry> e = jarZipFile.entries();
        while (e.hasMoreElements()) {
            zipEntry = (ZipEntry) e.nextElement();
            zipEntryName = zipEntry.getName();
            if (zipEntryName.startsWith(_name) && zipEntryName.endsWith(".zip")) {
                if (this.log.isInfoEnabled())
                    this.log.info("Found in " + zipEntryName);
                directory = new File(_zipFile.getParent(), FilenameUtils.removeExtension(zipEntryName));
                break;
            }
        }
        if (directory != null && !directory.exists()) {
            unzipEntry(jarZipFile, zipEntry, _zipFile.getParentFile());
            File asciiDocArchive = new File(_zipFile.getParent(), zipEntryName);
            unzipArchive(asciiDocArchive, _zipFile.getParentFile());
            asciiDocArchive.deleteOnExit();
        }

    } catch (ZipException ze) {
        this.log.error(ze.getMessage(), ze);
    } catch (IOException ioe) {
        this.log.error(ioe.getMessage(), ioe);
    }
    return directory;
}

From source file:com.mapr.ocr.text.ImageToText.java

public static String processPDF(String fileName) {
    File imageFile = new File(fileName);
    StringBuilder resultText = new StringBuilder();
    PDFDocument pdfDocument = new PDFDocument();
    try {/*ww w.j av a 2  s  .  co  m*/
        pdfDocument.load(imageFile);
        SimpleRenderer simpleRenderer = new SimpleRenderer();
        simpleRenderer.setResolution(300);

        List<Image> images = simpleRenderer.render(pdfDocument);

        ITesseract tesseract = new Tesseract();
        tesseract.setLanguage("eng");
        for (Image x : images) {
            resultText.append(tesseract.doOCR((BufferedImage) x));
        }

    } catch (Exception e) {
        e.printStackTrace();
        LOGGER.log(Level.SEVERE, "Exception processing PDF file  " + fileName + " " + e);
        String rowKey = FilenameUtils
                .removeExtension(fileName.substring(fileName.lastIndexOf("/") + 1, fileName.length()));
        populateDataInMapRDB(config, errorTable, rowKey, cf, "error", e.toString());
        populateDataInMapRDB(config, errorTable, rowKey, cf, "filepath", fileName);
    } finally {
        return resultText.toString();
    }

}

From source file:com.splunk.shuttl.archiver.importexport.csv.CsvBucketCreatorTest.java

@Test(groups = { "fast-unit" })
public void _givenCsvFileAndBucket_bucketNamedAsCsvFileWithoutTheCsvExtension() {
    Bucket csvBucket = csvBucketCreator.createBucketWithCsvFile(csvFile, bucket);
    String fileWithoutExtension = FilenameUtils.removeExtension(csvFile.getName());
    assertEquals(csvBucket.getName(), fileWithoutExtension);
}

From source file:com.github.thesmartenergy.gb.entities.Queries.java

@PostConstruct
public void initialize() {
    try {// ww  w  . j ava2s. c o  m
        String dir = context.getRealPath("/WEB-INF/classes/");
        LOG.info(dir);
        LOG.info(context.getRealPath("/WEB-INF/classes"));
        LOG.info(context.getClassLoader().getResource("/").toString());
        LOG.info(context.getClassLoader().getResource("/").getPath());
        LOG.info(context.getClassLoader().getResource("/").toURI().toString());

        File ontoDir = new File(dir + "/query/");
        for (File queryFile : ontoDir.listFiles()) {
            String queryFileName = queryFile.getName();
            String queryName = FilenameUtils.removeExtension(queryFileName);
            queries.put(base + queryFileName, queryFile);
            queries.put(base + queryName, queryFile);
        }
    } catch (Exception ex) {
        LOG.log(Level.SEVERE, "error while initializing app ", ex);
        throw new RuntimeException("error while initializing app ", ex);
    }
}

From source file:de.uni_siegen.wineme.come_in.thumbnailer.util.TemporaryFilesManager.java

/**
 * Create a new, read-only temporary file.
 * /*from ww  w  .  j a  v  a 2  s.c  om*/
 * @param file         Original file that you need a copy of
 * @param newExtension   The extension that the new file should have
 * @return File (read-only) 
 * @throws IOException
 */
public File createTempfileCopy(File file, String newExtension) throws IOException {
    File destFile = files.get(file);
    if (destFile == null) {
        destFile = File.createTempFile("temp", "." + newExtension);
        createNewCopy(file, destFile);
        destFile.setWritable(false, false);
    } else {
        String newFilename = FilenameUtils.removeExtension(destFile.getAbsolutePath()) + "." + newExtension;
        File newFile = new File(newFilename);
        boolean renameSucces = destFile.renameTo(newFile);
        if (!renameSucces) {
            createNewCopy(file, newFile);
        }
        files.put(file, newFile);
        destFile = newFile;
    }
    return destFile;
}

From source file:com.itemanalysis.jmetrik.file.JmetrikOutputWriter.java

public void saveJmetrikFile(File outputFile, Outputter outputter) throws IOException {

    ArrayList<VariableAttributes> variables = outputter.getColumnAttributes();
    LinkedHashMap<VariableName, VariableAttributes> variableAttributeMap = new LinkedHashMap<VariableName, VariableAttributes>();
    for (VariableAttributes v : variables) {
        variableAttributeMap.put(v.getName(), v);
    }//from www  .  j  av  a2  s.c o m

    //Ensure that file is a jMetrik file.
    String fname = FilenameUtils.removeExtension(outputFile.getAbsolutePath());
    outputFile = new File(fname + ".jmetrik");

    JmetrikFileWriter writer = new JmetrikFileWriter(outputFile, variableAttributeMap);

    try {
        writer.openConnection();
        writer.writeHeader(outputter.getNumberOfOutputRows());

        Iterator<Object[][]> iter = outputter.iterator();
        Object[][] outputChunk = null;

        while (iter.hasNext()) {
            outputChunk = iter.next();
            for (int i = 0; i < outputChunk.length; i++) {
                for (int j = 0; j < outputChunk[0].length; j++) {
                    VariableAttributes v = variables.get(j);
                    if (outputChunk[i][j] != null) {
                        writer.writeValue(v.getName(), outputChunk[i][j].toString());
                    }

                }
                writer.updateRow();
            }

        }

    } catch (IOException ex) {
        throw ex;
    } finally {
        writer.close();
    }

}

From source file:com.github.thesmartenergy.gb.query.QueryResource.java

@GET
@Produces("application/sparql-generate")
@Path("{id}")
public Response getAsTurtle(@PathParam("id") String id) {
    try {//  www .  ja v a2  s .  c om
        String requestedUri = queries.getBase() + id;
        System.out.println(requestedUri);
        if (!queries.getQueries().containsKey(requestedUri)) {
            return Response.status(Response.Status.NOT_FOUND).build();
        }
        File queryFile = queries.getQueries().get(requestedUri);
        Response.ResponseBuilder res = Response.ok(IOUtils.toString(new FileInputStream(queryFile)),
                "application/sparql-generate");
        res.header("Content-Disposition", "filename= " + FilenameUtils.removeExtension(id) + "." + "rqg;");
        return res.build();
    } catch (Exception ex) {
        Logger.getLogger(QueryResource.class.getName()).log(Level.SEVERE, null, ex);
        return Response.status(Response.Status.INTERNAL_SERVER_ERROR).build();
    }
}

From source file:ch.unibas.fittingwizard.infrastructure.RealFittabMarkerScript.java

@Override
public FittabScriptOutput execute(FittabScriptInput input) {

    String moleculeName = getMoleculeName(input.getCubeFile());
    File specificMoleculeDir = new File(moleculesDir, moleculeName);

    runner.setWorkingDir(specificMoleculeDir);

    List<String> args = Arrays.asList("-cube", input.getCubeFile().getAbsoluteFile().toString(), "-vdw",
            input.getVdwFile().getAbsoluteFile().toString(), "-pun",
            input.getLpunFile().getAbsoluteFile().toString());

    File mtpFile = new File(specificMoleculeDir,
            FilenameUtils.removeExtension(input.getCubeFile().getName()) + MtpFittabExtension);

    runner.exec(fitTabMarkerScriptFile, args);

    if (!mtpFile.exists()) {
        throw new ScriptExecutionException("FittabMarker script did not create "
                + FilenameUtils.normalize(mtpFile.getAbsolutePath()) + " output file.");
    }//ww w.j a v  a  2s.co  m

    return new FittabScriptOutput(mtpFile);
}