Example usage for org.apache.commons.io FileUtils copyDirectory

List of usage examples for org.apache.commons.io FileUtils copyDirectory

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  6. copyDirectory

Introduction

In this page you can find the example usage for org.apache.commons.io FileUtils copyDirectory.

Prototype

public static void copyDirectory(File srcDir, File destDir) throws IOException

Source Link

Document

Copies a whole directory to a new location preserving the file dates.

Usage

From source file:net.continuumsecurity.runner.StoryRunner.java

private void prepareReportsDir() throws IOException {
    FileUtils.deleteQuietly(new File(LATEST_REPORTS));
    File viewDir = new File(LATEST_REPORTS + File.separator + "view");
    FileUtils.copyDirectory(new File(RESOURCES_DIR), viewDir);
}

From source file:com.photon.maven.plugins.android.standalonemojos.UnpackMojo.java

private File unpackClasses() throws MojoExecutionException {
    File outputDirectory = new File(project.getBuild().getDirectory(), "android-classes");
    if (lazyLibraryUnpack && outputDirectory.exists())
        getLog().info("skip library unpacking due to lazyLibraryUnpack policy");
    else {/*from www.j av  a 2  s. c o  m*/
        for (Artifact artifact : getRelevantCompileArtifacts()) {

            if (artifact.getFile().isDirectory()) {
                try {
                    FileUtils.copyDirectory(artifact.getFile(), outputDirectory);
                } catch (IOException e) {
                    throw new MojoExecutionException(
                            "IOException while copying " + artifact.getFile().getAbsolutePath() + " into "
                                    + outputDirectory.getAbsolutePath(),
                            e);
                }
            } else {
                try {
                    JarHelper.unjar(new JarFile(artifact.getFile()), outputDirectory,
                            new JarHelper.UnjarListener() {
                                @Override
                                public boolean include(JarEntry jarEntry) {
                                    return !jarEntry.getName().startsWith("META-INF")
                                            && jarEntry.getName().endsWith(".class");
                                }
                            });
                } catch (IOException e) {
                    throw new MojoExecutionException(
                            "IOException while unjarring " + artifact.getFile().getAbsolutePath() + " into "
                                    + outputDirectory.getAbsolutePath(),
                            e);
                }
            }

        }
    }

    try {
        File sourceDirectory = new File(project.getBuild().getDirectory(), "classes");
        if (!sourceDirectory.exists()) {
            sourceDirectory.mkdirs();
        }
        FileUtils.copyDirectory(sourceDirectory, outputDirectory);
    } catch (IOException e) {
        throw new MojoExecutionException("IOException while copying " + sourceDirectory.getAbsolutePath()
                + " into " + outputDirectory.getAbsolutePath(), e);
    }
    return outputDirectory;
}

From source file:net.sourceforge.floggy.maven.PersistenceMojo.java

/**
 * DOCUMENT ME!// w  w  w. j ava  2s .com
*
* @throws MojoExecutionException DOCUMENT ME!
*/
public void execute() throws MojoExecutionException {
    MavenLogWrapper.setLog(getLog());

    LogFactory.getFactory().setAttribute("org.apache.commons.logging.Log",
            "net.sourceforge.floggy.maven.MavenLogWrapper");

    Weaver weaver = new Weaver();

    try {
        List list = project.getCompileClasspathElements();
        File temp = new File(project.getBuild().getDirectory(), String.valueOf(System.currentTimeMillis()));
        FileUtils.forceMkdir(temp);
        weaver.setOutputFile(temp);
        weaver.setInputFile(input);
        weaver.setClasspath((String[]) list.toArray(new String[list.size()]));

        if (configurationFile == null) {
            Configuration configuration = new Configuration();
            configuration.setAddDefaultConstructor(addDefaultConstructor);
            configuration.setGenerateSource(generateSource);
            weaver.setConfiguration(configuration);
        } else {
            weaver.setConfigurationFile(configurationFile);
        }

        weaver.execute();
        FileUtils.copyDirectory(temp, output);
        FileUtils.forceDelete(temp);
    } catch (Exception e) {
        throw new MojoExecutionException(e.getMessage(), e);
    }
}

From source file:gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.FileCopier.java

/**
 * Copy the given source file or directory to the given destination, keeping the same creation date as the source.
 *
 * @param sourceFileOrDirectory      the source file or directory
 * @param destinationFileOrDirectory the destination file or directory
 * @throws IOException if an IO error occurs during the copy
 */// w w w. j av a  2  s  .c o m
public static void copyFileOrDirectory(final File sourceFileOrDirectory, final File destinationFileOrDirectory)
        throws IOException {

    final File parentDirectory = destinationFileOrDirectory.getParentFile();
    if (!parentDirectory.exists()) {
        boolean success = parentDirectory.mkdirs();

        if (!success) {
            throw new IOException("Directory '" + parentDirectory + "' was not successfully created.");
        }
    }

    if (sourceFileOrDirectory.isDirectory()) {
        FileUtils.copyDirectory(sourceFileOrDirectory, destinationFileOrDirectory);
    } else {
        FileUtils.copyFile(sourceFileOrDirectory, destinationFileOrDirectory);
    }
}

From source file:ipat_fx.FXMLDocumentController.java

@FXML
private void saveOption(ActionEvent event) {
    FileChooser fc = new FileChooser();
    File file = new File(contextPath + "Saves/");
    if (!file.exists()) {
        file.mkdirs();/*  ww w .java2  s .  co m*/
    }
    fc.setInitialDirectory(file);
    DateFormat dateFormat = new SimpleDateFormat("yyyy-MM-dd_HH-mm-ss");
    Date date = new Date();
    fc.setInitialFileName("Ipat_" + dateFormat.format(date));
    File dest = fc.showSaveDialog(null);
    File src = new File(dataPath);
    try {
        FileUtils.copyDirectory(src, dest);
    } catch (IOException ex) {
        Logger.getLogger(IPAT_FX.class.getName()).log(Level.SEVERE, null, ex);
    }
}

From source file:com.kdmanalytics.toif.report.internal.importWizard.ToifReportImportJob.java

/**
 * copy the toif data.//  w w  w .jav a  2 s .c om
 * 
 * @param sourceFile
 *          source
 * @param destinationFile
 *          destination file
 * @throws IOException
 */
public void copy(File sourceFile, File destinationFile) throws IOException {

    FileUtils.copyDirectory(sourceFile, destinationFile);

}

From source file:de.decidr.ui.controller.VaadinTenantThemeInstaller.java

/**
 * Installs the custom theme of the given tenant, if that tenant has a
 * custom theme. If a current or outdated version of the custom theme is
 * already installed, it will be overwritten.
 * //  w  ww.  ja  v  a2 s. c o  m
 * @param tenantId
 * @return whether a custom theme was successfully installed. Also returns
 *         true if the custom theme was already installed and has been
 *         overwritten.
 */
public static boolean installLocally(long tenantId) {
    TenantFacade tenantFacade = ModelFacades.getTenantFacade();
    InputStream cssContents = null;
    InputStream logoFileContents = null;

    /*
     * The custom theme is created by copying the default theme and
     * replacing the logo and css files
     */
    File template = null;
    File destination = null;
    /*
     * Target files to replace
     */
    File cssFile = UIConventions.getCssFile(tenantId);
    File logoFile = UIConventions.getLogoFile(tenantId);

    try {
        cssContents = tenantFacade.getCurrentColorScheme(tenantId);
        logoFileContents = tenantFacade.getLogo(tenantId);

        /*
         * Create a copy of the default theme.
         */
        template = UIConventions.getThemeDirectory(UIConventions.DEFAULT_THEME_NAME);
        destination = UIConventions.getThemeDirectory(UIConventions.getThemeName(tenantId));
        if (!template.equals(destination)) {
            FileUtils.copyDirectory(template, destination);
        }

        /*
         * Replace CSS and logo
         */
        replaceFile(cssFile, cssContents);
        replaceFile(logoFile, logoFileContents);
    } catch (IOException e) {
        logger.error("Cannot create custom tenant theme from template", e);
        try {
            /*
             * Undo creation of new directory if possible
             */
            if (destination != null && destination.isDirectory()) {
                FileUtils.deleteDirectory(destination);
            }
        } catch (IOException undoException) {
            if (destination != null) {
                logger.error("Cannot undo creation of destination directory. We have a file corpse: "
                        + destination.getAbsolutePath(), undoException);
            }
        }
        return false;
    } catch (TransactionException e) {
        DecidrUI.getCurrent().getMainWindow().addWindow(new TransactionErrorDialogComponent(e));
        return false;
    } finally {
        IOUtils.closeQuietly(cssContents);
        IOUtils.closeQuietly(logoFileContents);
    }

    return true;
}

From source file:net.mindengine.dashserver.compiler.GlobalAssetsFileWatcher.java

private void copyDirectoryAsset(File dir) throws IOException {
    String destFolder = compiledAssetsFolder.getAbsolutePath() + File.separator + dir.getName();
    FileUtils.copyDirectory(dir, new File(destFolder));
    Files.find(Paths.get(destFolder), 999, (p, bfa) -> bfa.isRegularFile()).forEach(file -> {

        String relativePath = new File(compiledAssetsFolder.getAbsolutePath()).toURI().relativize(file.toUri())
                .getPath();/*from w  ww  .  j  a va2  s. c  o m*/
        try {
            addItemToAssets(relativePath.replace("\\", "/"));
        } catch (IOException e) {
            e.printStackTrace();
        }
    });
}

From source file:com.compomics.pladipus.denovo.processsteps.DenovoGUIStep.java

@Override
public boolean doAction() throws UnspecifiedPladipusException, PladipusProcessingException {
    LOGGER.info("Running " + this.getClass().getName());
    File parameterFile = new File(parameters.get("id_params"));
    LOGGER.info("Updating parameters...");
    try {//from   ww w .j  a v  a  2s  . com
        SearchParameters identificationParameters = SearchParameters.getIdentificationParameters(parameterFile);
        //fix the location
        SearchParameters.saveIdentificationParameters(identificationParameters, parameterFile);
        if (temp_deNovoGUI_output.exists()) {
            temp_deNovoGUI_output.delete();
        }
        temp_deNovoGUI_output.mkdirs();

        LOGGER.info("Starting searchGUI...");
        //use this variable if you'd run following this classs
        File real_outputFolder = new File(parameters.get("output_folder"));
        parameters.put("output_folder", temp_deNovoGUI_output.getAbsolutePath());
        new ProcessingEngine().startProcess(getJar(), constructArguments());
        //storing intermediate results
        LOGGER.info("Storing results in " + real_outputFolder);
        FileUtils.copyDirectory(temp_deNovoGUI_output, real_outputFolder);
        //in case of future peptideShaker searches :
        parameters.put("identification_files", temp_deNovoGUI_output.getAbsolutePath());
    } catch (IOException | ClassNotFoundException ioe) {
        UnspecifiedPladipusException ex = new UnspecifiedPladipusException("sumting went rong");
        ex.addSuppressed(ioe);
        throw ex;
    }
    return true;
}

From source file:com.thesett.elm.maven.BuildElmMojo.java

/** {@inheritDoc} */
public void execute(FrontendPluginFactory factory) throws FrontendException {
    if (shouldExecute()) {
        NodeExecutorConfig executorConfig = factory.getExecutorConfig();
        File workingDirectory = executorConfig.getWorkingDirectory();

        // Set up the working directory to be in an elm directory immediately beneath the working directory.
        String elmWorkingPath = workingDirectory.getPath() + "/" + ELM_DIR;
        File elmWorkingDir = null;

        try {//w w  w.j  a va2  s .  co m
            elmWorkingDir = createDirIfNotExists(workingDirectory, elmWorkingPath);
        } catch (IOException e) {
            throw new FrontendException(e.getMessage(), e);
        }

        executorConfig = new WrappedExecutorConfig(executorConfig, elmWorkingDir);

        // Copy sources from the source dir to the working dir.
        try {
            FileUtils.copyDirectory(srcdir, elmWorkingDir);
        } catch (IOException e) {
            throw new FrontendException(e.getMessage(), e);
        }

        // Install dependencies and make it.
        ElmGithubInstallRunner elmGithubInstallRunner = new ElmGithubInstallRunner(executorConfig);
        ElmMakeRunner elmMakeRunner = new ElmMakeRunner(executorConfig);

        elmGithubInstallRunner.execute("", environmentVariables);

        String artifact = project.getArtifactId();
        String outputDirName = project.getBuild().getOutputDirectory();

        // Trim any leading or trailing path separators from the output path.
        String outDirectory = outPath.replaceAll("^/+", "");
        outDirectory = outDirectory.replaceAll("/+$", "");

        String outputFile = outputDirName + "/" + ("".equals(outDirectory) ? "" : outDirectory + "/") + artifact
                + ".js";

        elmMakeRunner.execute(srcSpec + " --output " + outputFile, environmentVariables);
    }
}