Example usage for org.apache.commons.io FileUtils copyDirectory

List of usage examples for org.apache.commons.io FileUtils copyDirectory

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Introduction

In this page you can find the example usage for org.apache.commons.io FileUtils copyDirectory.

Prototype

public static void copyDirectory(File srcDir, File destDir) throws IOException

Source Link

Document

Copies a whole directory to a new location preserving the file dates.

Usage

From source file:ml.shifu.shifu.core.pmml.PMMLTranslatorTest.java

@Test
public void testMixTypeVariablePmmlCase() throws Exception {
    // Step 1. Eval the scores using SHIFU
    File originModel = new File("src/test/resources/example/labor-neg/DataStore/DataSet1/ModelConfig.json");
    File tmpModel = new File("ModelConfig.json");

    File originColumn = new File("src/test/resources/example/labor-neg/DataStore/DataSet1/ColumnConfig.json");
    File tmpColumn = new File("ColumnConfig.json");

    File modelsDir = new File("src/test/resources/example/labor-neg/DataStore/DataSet1/models");
    File tmpModelsDir = new File("models");

    FileUtils.copyFile(originModel, tmpModel);
    FileUtils.copyFile(originColumn, tmpColumn);
    FileUtils.copyDirectory(modelsDir, tmpModelsDir);

    // run evaluation set
    ShifuCLI.runEvalScore("EvalA");
    File evalScore = new File("evals/EvalA/EvalScore");

    ShifuCLI.exportModel(null);// w w w . j a  va2  s .c  o  m

    // Step 2. Eval the scores using PMML
    String pmmlPath = "pmmls/ModelK0.pmml";
    String DataPath = "src/test/resources/example/labor-neg/DataStore/DataSet1/data.dat";
    String OutPath = "model_k_out.dat";
    evalPmml(pmmlPath, DataPath, OutPath, ",", "model0");

    // Step 3. Compare the SHIFU Eval score and PMML score
    compareScore(evalScore, new File(OutPath), "model0", "\\|", 1.0);
    FileUtils.deleteQuietly(new File(OutPath));

    FileUtils.deleteQuietly(tmpModel);
    FileUtils.deleteQuietly(tmpColumn);
    FileUtils.deleteDirectory(tmpModelsDir);

    FileUtils.deleteQuietly(new File("./pmmls"));
    FileUtils.deleteQuietly(new File("evals"));
}

From source file:ipat_fx.FXMLDocumentController.java

@FXML
private void loadOption(ActionEvent event) {

    DirectoryChooser dc = new DirectoryChooser();
    File file = new File(contextPath + "Saves/");
    dc.setInitialDirectory(file);/*from  www.j a  va  2 s  .c  o  m*/
    File dest = new File(dataPath);
    File seeds = new File(dataPath + "/seeds/");
    seeds.delete();
    seeds.mkdirs();
    dest.delete();
    dest.mkdirs();
    File src = dc.showDialog(null);

    try {

        FileUtils.copyDirectory(src, dest);
        File profiles = new File(outputFolder.getAbsolutePath() + "/generations");
        File[] listFiles = profiles.listFiles();

        int lastGeneration = 0;
        for (File listFile : listFiles) {
            if (!listFile.isDirectory()) {
                String profileName = listFile.getName();
                System.out.println("profileName : " + profileName);
                int generation = Integer.parseInt(
                        profileName.substring((profileName.indexOf('_') + 1), profileName.indexOf('-')));
                System.out.println("generation : " + generation);
                if (generation > lastGeneration) {
                    lastGeneration = generation;
                }
            }
        }

        for (File listFile : listFiles) {
            String profileName = listFile.getName();
            if (Integer.parseInt(profileName.substring((profileName.indexOf('_') + 1),
                    profileName.indexOf('-'))) == lastGeneration) {
                FileUtils.copyFile(listFile, new File(seeds + "/" + listFile.getName()));
            }
        }

        controller = new Controller(inputFolder, outputFolder, seeds, hintsXML, problemDataFolderName);

        HashMap<String, Object> display = controller.initialisation();
        WebView previewView = (WebView) display.get("previewView");
        previewPane.getChildren().add(previewView);
        @SuppressWarnings("unchecked")
        HashMap<String, ArrayList<GridPane>> map = (HashMap<String, ArrayList<GridPane>>) display
                .get("results");

        if (tabFlag.equalsIgnoreCase("byImage")) {
            byImageTab = getByImage(map);
            byImagePane.setCenter(byImageTab);
        } else if (tabFlag.equalsIgnoreCase("byProfile")) {
            byProfileTab = getByProfile(map, controller.noOfProfiles);
            byProfilePane.setCenter(byProfileTab);
        }

        tabPane.getSelectionModel().selectedIndexProperty()
                .addListener((ObservableValue<? extends Number> ov, Number oldValue, Number newValue) -> {
                    if (newValue == Number.class.cast(1)) {
                        byImageTab = getByImage(map);
                        byImagePane.setCenter(byImageTab);
                    } else if (newValue == Number.class.cast(0)) {
                        byProfileTab = getByProfile(map, controller.noOfProfiles);
                        byProfilePane.setCenter(byProfileTab);
                    } else {
                        System.out.println("Error this tab has not been created.");
                    }
                });
    } catch (IOException ex) {
        Logger.getLogger(IPAT_FX.class.getName()).log(Level.SEVERE, null, ex);
    }

}

From source file:com.boundlessgeo.geoserver.bundle.BundleImporter.java

void loadWorkspace(File wsDir) throws IOException {
    //        WorkspaceInfo ws = depersist(new File(wsDir, "workspace.xml"), WorkspaceInfo.class);
    //        catalog.add(ws);
    ////from   w  ww .  ja v  a2  s .  c  o  m
    //        NamespaceInfo ns = depersist(new File(wsDir, "namespace.xml"), NamespaceInfo.class);
    //        catalog.add(ns);

    // data directory
    File dataDir = new File(wsDir, "data");
    if (dataDir.exists()) {
        FileUtils.copyDirectory(dataDir, targetDataDir.get(workspace, "data").dir());
    }

    // styles
    File styleDir = new File(wsDir, "styles");
    if (styleDir.exists()) {
        loadStyles(styleDir);
    }

    //TODO: layer groups

    // stores
    for (File dir : wsDir.listFiles(DIRECTORY)) {
        loadStore(dir, wsDir);
    }
}

From source file:ml.shifu.shifu.core.pmml.PMMLVerifySuit.java

public boolean doVerification() throws Exception {
    // Step 1. Eval the scores using SHIFU
    File originModel = new File(this.modelConfigPath);
    File tmpModel = new File("ModelConfig.json");

    File originColumn = new File(this.columnConfigpath);
    File tmpColumn = new File("ColumnConfig.json");

    File modelsDir = new File(this.modelsPath);
    File tmpModelsDir = new File("models");

    FileUtils.copyFile(originModel, tmpModel);
    FileUtils.copyFile(originColumn, tmpColumn);
    FileUtils.copyDirectory(modelsDir, tmpModelsDir);

    // run evaluation set
    ShifuCLI.runEvalScore(this.evalSetName, null);
    File evalScore = new File("evals" + File.separator + this.evalSetName + File.separator + "EvalScore");

    Map<String, Object> params = new HashMap<String, Object>();
    params.put(ExportModelProcessor.IS_CONCISE, this.isConcisePmml);
    ShifuCLI.exportModel(null, params);// w w w  .  jav  a 2 s .  co m

    // Step 2. Eval the scores using PMML and compare it with SHIFU output

    String DataPath = this.evalDataPath;
    String OutPath = "./pmml_out.dat";
    for (int index = 0; index < modelCnt; index++) {
        String num = Integer.toString(index);
        String pmmlPath = "pmmls" + File.separator + this.modelName + num + ".pmml";

        if (ModelTrainConf.ALGORITHM.NN.equals(algorithm)) {
            evalNNPmml(pmmlPath, DataPath, OutPath, this.delimiter, "model" + num);
        } else if (ModelTrainConf.ALGORITHM.LR.equals(algorithm)) {
            evalLRPmml(pmmlPath, DataPath, OutPath, this.delimiter, "model" + num);
        } else {
            logger.error("The algorithm - {} is not supported yet.", algorithm);
            return false;
        }

        boolean status = compareScore(evalScore, new File(OutPath), "model" + num, "\\|", this.scoreDiff);
        if (!status) {
            return status;
        }

        FileUtils.deleteQuietly(new File(OutPath));
    }

    FileUtils.deleteQuietly(tmpModel);
    FileUtils.deleteQuietly(tmpColumn);
    FileUtils.deleteDirectory(tmpModelsDir);

    FileUtils.deleteQuietly(new File("./pmmls"));
    FileUtils.deleteQuietly(new File("evals"));

    return true;
}

From source file:com.ettrema.http.fs.FsDirectoryResource.java

@Override
protected void doCopy(File dest) {
    try {//  ww w .ja va 2s. c om
        FileUtils.copyDirectory(this.getFile(), dest);
    } catch (IOException ex) {
        throw new RuntimeException("Failed to copy to:" + dest.getAbsolutePath(), ex);
    }
}

From source file:edu.harvard.iq.dvn.core.analysis.NetworkDataServiceBean.java

public void initAnalysis(String fileSystemLocation, String sessionId) {

    try {/*  w w  w . jav  a2  s  . c om*/
        File fileLocation = new File(fileSystemLocation);
        String neoDirName = FileUtil.replaceExtension(fileLocation.getName(), NEO4J_EXTENSION);
        File neoDir = new File(fileLocation.getParent(), neoDirName);
        // Coy neoDB directory to a temporary location, so this bean can have exclusive access to it.
        File tempNeoDir = new File(baseTempPath, sessionId + new Long(new Date().getTime()).toString());
        tempNeoDir.mkdir();
        tempNeoDir.deleteOnExit();
        FileUtils.copyDirectory(neoDir, tempNeoDir);

        // File copyNeoDB = FileUtils.
        File sqliteFile = new File(fileLocation.getParent(),
                FileUtil.replaceExtension(fileLocation.getName(), SQLITE_EXTENSION));
        try {
            if (dvnGraphFactory == null) {
                dvnGraphFactory = new DVNGraphFactory(LIB_PATH);
            }
            //dvnGraph = new DVNGraphFactory(LIB_PATH).
            dvnGraph = dvnGraphFactory.newInstance(tempNeoDir.getAbsolutePath(), sqliteFile.getAbsolutePath(),
                    NEO4J_CONFIG_FILE);
            //dvnGraph = new DVNGraphImpl(tempNeoDir.getAbsolutePath(), sqliteFile.getAbsolutePath(), NEO4J_CONFIG_FILE);
        } catch (ClassNotFoundException e) {
            throw new EJBException(e);
        }
        //dvnGraph.initialize();
        this.fileSystemLocation = fileSystemLocation;
    } catch (IOException e) {
        throw new EJBException(e);
    }
}

From source file:com.aspose.barcode.maven.examples.AsposeExampleSupport.java

public void createExample() {
    String srcExamplePath = System.getProperty("user.home") + File.separator + localExampleFolder
            + File.separator + localExampleSourceFolder;
    String srcExampleResourcePath = System.getProperty("user.home") + File.separator + localExampleFolder
            + File.separator + localExampleResourceFolder;

    String destProjectExamplePath = selectedProjectPath + File.separator + localExampleSourceFolder;
    String destProjectExampleResourcePath = selectedProjectPath + File.separator + localExampleResourceFolder;

    File srcExampleCategoryPath = new File(srcExamplePath + File.separator + exampleCategory);
    File destExampleCategoryPath = new File(destProjectExamplePath + File.separator + exampleCategory);

    Path srcUtil = new File(srcExamplePath + File.separator + "Utils.java").toPath();
    Path destUtil = new File(destProjectExamplePath + File.separator + "Utils.java").toPath();

    File srcExampleResourceCategoryPath = new File(srcExampleResourcePath + File.separator + exampleCategory);
    File destExampleResourceCategoryPath = new File(
            destProjectExampleResourcePath + File.separator + exampleCategory);

    String repositoryPOM_XML = System.getProperty("user.home") + File.separator + localExampleFolder
            + File.separator + AsposeConstants.MAVEN_POM_XML;

    try {//  w w w.j a  v  a  2s . c  o m
        FileUtils.copyDirectory(srcExampleCategoryPath, destExampleCategoryPath);
        Files.copy(srcUtil, destUtil, StandardCopyOption.REPLACE_EXISTING);
        FileUtils.copyDirectory(srcExampleResourceCategoryPath, destExampleResourceCategoryPath);

        NodeList examplesNoneAsposeDependencies = AsposeMavenProjectManager.getInstance()
                .getDependenciesFromPOM(repositoryPOM_XML, AsposeConstants.ASPOSE_GROUP_ID);
        AsposeMavenProjectManager.getInstance().addMavenDependenciesInProject(examplesNoneAsposeDependencies);

        NodeList examplesNoneAsposeRepositories = AsposeMavenProjectManager.getInstance()
                .getRepositoriesFromPOM(repositoryPOM_XML, AsposeConstants.ASPOSE_MAVEN_REPOSITORY);
        AsposeMavenProjectManager.getInstance().addMavenRepositoriesInProject(examplesNoneAsposeRepositories);

        project.refreshLocal(IResource.DEPTH_INFINITE, null);

    } catch (IOException | CoreException e) {
        e.printStackTrace();
    }

}

From source file:com.googlecode.t7mp.steps.ResolveTomcatStep.java

private void copyToTomcatDirectory(final File unpackDirectory) throws IOException {
    File[] files = unpackDirectory.listFiles(new FileFilter() {
        @Override// w  ww  .j a va  2  s  . com
        public boolean accept(final File file) {
            return file.isDirectory();
        }
    });

    // should only be one
    FileUtils.copyDirectory(files[0], this.configuration.getCatalinaBase());
}

From source file:gr.aueb.mipmapgui.controller.file.ActionSaveMappingTask.java

private void copyTempContents(String saveName, String user) throws IOException {
    String tempFolderPath = Costanti.SERVER_MAIN_FOLDER + Costanti.SERVER_FILES_FOLDER + user + "/"
            + Costanti.SERVER_TEMP_FOLDER;
    File srcDir = new File(tempFolderPath);
    String destFolderPath = Costanti.SERVER_MAIN_FOLDER + Costanti.SERVER_FILES_FOLDER + user + "/" + saveName;
    File destDir = new File(destFolderPath);
    FileUtils.copyDirectory(srcDir, destDir);
}

From source file:com.google.gdt.eclipse.designer.gxt.actions.ConfigureExtGwtOperation.java

private void execute0() throws Exception {
    // ensure jar
    if (!ProjectUtils.hasType(m_javaProject, "com.extjs.gxt.ui.client.widget.Component")) {
        String jarPath = getJarPath(m_libraryLocation);
        if (EnvironmentUtils.isTestingTime()) {
            ProjectUtils.addExternalJar(m_javaProject, jarPath, null);
        } else {/* w ww . j  av a2s.c  o m*/
            ProjectUtils.addJar(m_javaProject, jarPath, null);
        }
    }
    // copy resources
    {
        File resourcesSourceDir = new File(new File(m_libraryLocation), "resources");
        IFolder webFolder = WebUtils.getWebFolder(m_javaProject);
        File webDir = webFolder.getLocation().toFile();
        File resourceTargetDir = new File(webDir, "ExtGWT");
        FileUtils.copyDirectory(resourcesSourceDir, resourceTargetDir);
        webFolder.refreshLocal(IResource.DEPTH_INFINITE, null);
    }
    // add elements into module
    DefaultModuleProvider.modify(m_module, new ModuleModification() {
        public void modify(ModuleElement moduleElement) throws Exception {
            moduleElement.addInheritsElement("com.extjs.gxt.ui.GXT");
        }
    });
    // add "stylesheet" into HTML
    {
        IFile htmlFile = Utils.getHTMLFile(m_module);
        if (htmlFile != null) {
            String content = IOUtils2.readString(htmlFile);
            int linkIndex = content.indexOf("<link type=");
            if (linkIndex != -1) {
                String prefix = StringUtilities.getLinePrefix(content, linkIndex);
                String GXTStylesheet = "<link type=\"text/css\" rel=\"stylesheet\" href=\"ExtGWT/css/gxt-all.css\">";
                content = content.substring(0, linkIndex) + GXTStylesheet + SystemUtils.LINE_SEPARATOR + prefix
                        + content.substring(linkIndex);
                IOUtils2.setFileContents(htmlFile, content);
            }
        }
    }
}