List of usage examples for org.apache.hadoop.mapreduce.lib.output FileOutputFormat subclass-usage
From source file fi.tkk.ics.hadoop.bam.BAMOutputFormat.java
/** Currently this only locks down the value type of the {@link * org.apache.hadoop.mapreduce.OutputFormat}: contains no functionality. */ public abstract class BAMOutputFormat<K> extends FileOutputFormat<K, SAMRecordWritable> { }
From source file fi.tkk.ics.hadoop.bam.cli.CLIMergingAnySAMOutputFormat.java
public class CLIMergingAnySAMOutputFormat<K> extends FileOutputFormat<K, SAMRecordWritable> { private KeyIgnoringAnySAMOutputFormat<K> baseOF; private void initBaseOF(Configuration conf) { if (baseOF == null) baseOF = new KeyIgnoringAnySAMOutputFormat<K>(conf);
From source file fi.tkk.ics.hadoop.bam.cli.plugins.VCFSort.java
final class SortOutputFormat<K> extends FileOutputFormat<K, VariantContextWritable> { public static final String INPUT_PATH_PROP = "hadoopbam.vcfsort.inpath"; private KeyIgnoringVCFOutputFormat<K> baseOF; private void initBaseOF(Configuration conf) {
From source file fi.tkk.ics.hadoop.bam.VCFOutputFormat.java
/** An abstract {@link org.apache.hadoop.mapreduce.OutputFormat} for VCF and * BCF files. Only locks down the value type and stores the output format * requested. */ public abstract class VCFOutputFormat<K> extends FileOutputFormat<K, VariantContextWritable> { /** A string property defining the output format to use. The value is read
From source file fr.ens.biologie.genomique.eoulsan.bio.io.hadoop.ExpressionOutputFormat.java
/** * This class define a expression output format. * @author Laurent Jourdren * @since 2.0 */ public class ExpressionOutputFormat extends FileOutputFormat<Text, LongWritable> {
From source file fr.ens.biologie.genomique.eoulsan.bio.io.hadoop.FastqOutputFormat.java
/** * This class define a FASTQ output format. * @author Laurent Jourdren * @since 2.0 */ public class FastqOutputFormat extends FileOutputFormat<Text, Text> {
From source file fr.ens.biologie.genomique.eoulsan.bio.io.hadoop.SAMOutputFormat.java
/** * This class define a SAM output format. * @author Laurent Jourdren * @since 2.0 */ public class SAMOutputFormat extends FileOutputFormat<Text, Text> {
From source file gr.ntua.h2rdf.inputFormat.MultiHFileOutputFormat.java
public class MultiHFileOutputFormat extends FileOutputFormat<ImmutableBytesWritable, KeyValue> { static final String COMPRESSION_CONF_KEY = "hbase.hfileoutputformat.families.compression"; Map<ImmutableBytesWritable, RecordWriter<ImmutableBytesWritable, KeyValue>> writers = new HashMap<ImmutableBytesWritable, RecordWriter<ImmutableBytesWritable, KeyValue>>(); /* Data structure to hold a Writer and amount of data written on it. */
From source file hadoop.examples.terasort.TeraOutputFormat.java
/** * An output format that writes the key and value appended together. */ public class TeraOutputFormat extends FileOutputFormat<Text, Text> { static final String FINAL_SYNC_ATTRIBUTE = "mapreduce.terasort.final.sync"; private OutputCommitter committer = null;
From source file info.halo9pan.word2vec.hadoop.mr.SortOutputFormat.java
/** * An output format that writes the key and value appended together. */ public class SortOutputFormat extends FileOutputFormat<Text, Text> { static final String FINAL_SYNC_ATTRIBUTE = "mapreduce.terasort.final.sync"; private OutputCommitter committer = null;