Example usage for org.jfree.data.statistics DefaultBoxAndWhiskerCategoryDataset DefaultBoxAndWhiskerCategoryDataset

Introduction

In this page you can find the example usage for org.jfree.data.statistics DefaultBoxAndWhiskerCategoryDataset DefaultBoxAndWhiskerCategoryDataset.

Prototype

public DefaultBoxAndWhiskerCategoryDataset() 

Source Link

Document

Creates a new dataset.

Usage

From source file:de.hs.mannheim.modUro.controller.diagram.BoxAndWhiskerPlotController.java

/**
 * Creates dataset for BoxWhiskerPlot.//from ww w .ja va  2s .  co m
 *
 * @return
 */
private BoxAndWhiskerCategoryDataset createDataset() {

    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();

    List<String> sortedModels = new ArrayList<>(models);
    sortedModels.sort(String::compareTo);
    for (String model : sortedModels) {
        StatisticValues stat = stats.get(model);
        BoxAndWhiskerItem item = new BoxAndWhiskerItem(stat.getMean(), stat.getSecondPercentile(),
                stat.getFirstPercentile(), stat.getLastPercentile(), stat.getMin(), stat.getMax(),
                stat.getMin(), stat.getMax(), new ArrayList<>());
        // Second parameter is the row key (?), using always the same works:
        dataset.add(item, "", model);
    }
    return dataset;
}

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From source file:net.sf.maltcms.chromaui.normalization.spi.charts.PeakGroupBoxPlot.java

public List<JFreeChart> createChart() {
    List<JFreeChart> charts = new ArrayList<>();
    LinkedHashSet<ITreatmentGroupDescriptor> treatmentGroups = new LinkedHashSet<>(
            project.getTreatmentGroups());
    List<CategoryPlot> plots = new LinkedList<>();
    for (IPeakGroupDescriptor pgd : pgdl) {
        LinkedHashMap<ITreatmentGroupDescriptor, HashSet<IPeakAnnotationDescriptor>> map = new LinkedHashMap<>();
        for (ITreatmentGroupDescriptor itgd : treatmentGroups) {
            map.put(itgd, new LinkedHashSet<IPeakAnnotationDescriptor>());
        }//from  www  .j  av  a2 s .co m
        List<IPeakAnnotationDescriptor> descriptors = pgd.getPeakAnnotationDescriptors();

        DefaultBoxAndWhiskerCategoryDataset baw = new DefaultBoxAndWhiskerCategoryDataset();
        for (IPeakAnnotationDescriptor ipad : descriptors) {
            ITreatmentGroupDescriptor treatmentGroup = ipad.getChromatogramDescriptor().getTreatmentGroup();
            HashSet<IPeakAnnotationDescriptor> descr = map.get(treatmentGroup);
            if (descr == null) {
                descr = new HashSet<>();
                map.put(treatmentGroup, descr);
            }
            descr.add(ipad);
        }
        List<Color> colors = new LinkedList<>();
        for (ITreatmentGroupDescriptor tgd : map.keySet()) {
            String name = getPeakName(pgd);
            baw.add(createBoxAndWhiskerItem(map.get(tgd)), tgd.getName() + " (" + map.get(tgd).size() + ")",
                    name);
            colors.add(tgd.getColor());
        }
        BoxAndWhiskerRenderer renderer = new BoxAndWhiskerRenderer();
        renderer.setFillBox(true);
        renderer.setMeanVisible(false);
        renderer.setMedianVisible(true);
        renderer.setArtifactPaint(new Color(0, 0, 0, 128));
        renderer.setMaximumBarWidth(0.1);
        renderer.setUseOutlinePaintForWhiskers(false);
        //            renderer.setAutoPopulateSeriesFillPaint(true);
        //            renderer.setAutoPopulateSeriesPaint(true);
        //            renderer.setAutoPopulateSeriesOutlinePaint(true);
        CategoryPlot cp = new CategoryPlot(baw, new CategoryAxis("Treatment Groups"),
                new NumberAxis("Normalized Peak Area"), renderer);
        Logger.getLogger(getClass().getName()).log(Level.INFO, "Setting {0} colors!", colors.size());
        ChartCustomizer.setSeriesColors(cp, 0.6f, colors);
        //            ChartCustomizer.setSeriesColors(cp, 0.9f,colors);
        plots.add(cp);
        JFreeChart chart = new JFreeChart(cp);
        chart.setTitle(
                "Peak group " + pgd.getDisplayName() + " size: " + pgd.getPeakAnnotationDescriptors().size());
        charts.add(chart);
    }
    //        CategoryAxis ca = new CategoryAxis("Treatment Groups");
    //        NumberAxis va = new NumberAxis("Normalized Peak Area");
    //        CombinedDomainCategoryPlot cdcp = new CombinedDomainCategoryPlot(ca);
    //        for (CategoryPlot cp : plots) {
    //            cp.setRangeAxis(va);
    //            cdcp.add(cp);
    //            break;
    //        }
    //        return new JFreeChart(cdcp);
    return charts;
}

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From source file:org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDatasetTest.java

/**
 * Serialize an instance, restore it, and check for equality.
 *//*from w w  w  .  j  av  a  2s.c o m*/
@Test
public void testSerialization() {
    DefaultBoxAndWhiskerCategoryDataset d1 = new DefaultBoxAndWhiskerCategoryDataset();
    d1.add(new BoxAndWhiskerItem(new Double(1.0), new Double(2.0), new Double(3.0), new Double(4.0),
            new Double(5.0), new Double(6.0), new Double(7.0), new Double(8.0), new ArrayList()), "ROW1",
            "COLUMN1");
    DefaultBoxAndWhiskerCategoryDataset d2 = (DefaultBoxAndWhiskerCategoryDataset) TestUtilities.serialised(d1);
    assertEquals(d1, d2);
}

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From source file:umontreal.iro.lecuyer.charts.BoxSeriesCollection.java

/**
 * Creates a new <TT>BoxSeriesCollection</TT> instance with default
 *    parameters and given data series. The input parameter represents series
 *    of point sets.//from ww w.  j a  v a2  s . c  o  m
 * 
 * @param data series of point sets.
 * 
 * 
 */
public BoxSeriesCollection(double[]... data) {
    renderer = new BoxAndWhiskerRenderer();
    seriesCollection = new DefaultBoxAndWhiskerCategoryDataset();

    DefaultBoxAndWhiskerCategoryDataset tempSeriesCollection = (DefaultBoxAndWhiskerCategoryDataset) seriesCollection;

    for (int i = 0; i < data.length; i++) {
        if (data[i].length == 0)
            throw new IllegalArgumentException("Unable to render the plot. data[" + i + "] contains no row");
        final List<Double> list = new ArrayList<Double>();
        for (int j = 0; j < data[i].length - 1; j++)
            list.add(data[i][j]);
        tempSeriesCollection.add(list, 0, "Serie " + i);
        list.clear();
    }
    ((BoxAndWhiskerRenderer) renderer).setMaximumBarWidth(BARWIDTH);
}

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From source file:edu.ucla.stat.SOCR.chart.demo.BoxAndWhiskerChartDemo3.java

/**
 * Returns a sample dataset.//from   ww w .  j  a v  a2  s  .  c o  m
 * 
 * @return The dataset.
 */
protected BoxAndWhiskerCategoryDataset createDataset(boolean isDemo) {
    if (isDemo) {
        rangeLabel = "Value";
        SERIES_COUNT = 3;
        // CATEGORY_COUNT = 2;
        VALUE_COUNT = 10;
        values_storage = new String[SERIES_COUNT][CATEGORY_COUNT];

        DefaultBoxAndWhiskerCategoryDataset result = new DefaultBoxAndWhiskerCategoryDataset();

        for (int s = 0; s < SERIES_COUNT; s++) {
            for (int c = 0; c < CATEGORY_COUNT; c++) {
                List values = createValueList(0, 20.0, VALUE_COUNT);
                values_storage[s][c] = vs;
                result.add(values, "Series " + s, "Category " + c);
            }
        }
        return result;
    } else
        return super.createDataset(false);
}

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From source file:org.jax.bham.test.PhenotypeEffectPlotPanel.java

private BoxAndWhiskerCategoryDataset createDataset() {
    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();

    if (this.showIndividualStrainEffectsCheckBox.isSelected()) {
        for (Entry<String, ? extends Collection<String>> strainGroupEntry : this.strainGroups.entrySet()) {
            for (String strain : strainGroupEntry.getValue()) {
                dataset.add(this.phenotypeData.get(strain), strain, strainGroupEntry.getKey());
            }//from w  w w .j ava  2s .c  o m
        }
    } else {
        Map<String, Double> meanPhenoData = new HashMap<String, Double>(this.phenotypeData.size());
        for (Entry<String, List<Double>> phenoEntry : this.phenotypeData.entrySet()) {
            if (!phenoEntry.getValue().isEmpty()) {
                double sum = 0.0;
                for (double value : phenoEntry.getValue()) {
                    sum += value;
                }
                double mean = sum / phenoEntry.getValue().size();

                meanPhenoData.put(phenoEntry.getKey(), mean);
            }
        }

        for (Entry<String, ? extends Collection<String>> strainGroupEntry : this.strainGroups.entrySet()) {
            List<Double> valueList = new ArrayList<Double>(strainGroupEntry.getValue().size());
            for (String strain : strainGroupEntry.getValue()) {
                valueList.add(meanPhenoData.get(strain));
            }
            dataset.add(valueList, SequenceUtilities.toString(strainGroupEntry.getValue(), ", "),
                    strainGroupEntry.getKey());
        }
    }

    return dataset;
}

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From source file:org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDatasetTest.java

/**
 * Confirm that cloning works./*ww  w. ja v a2s.c o m*/
 */
@Test
public void testCloning() throws CloneNotSupportedException {
    DefaultBoxAndWhiskerCategoryDataset d1 = new DefaultBoxAndWhiskerCategoryDataset();
    d1.add(new BoxAndWhiskerItem(new Double(1.0), new Double(2.0), new Double(3.0), new Double(4.0),
            new Double(5.0), new Double(6.0), new Double(7.0), new Double(8.0), new ArrayList()), "ROW1",
            "COLUMN1");
    DefaultBoxAndWhiskerCategoryDataset d2 = (DefaultBoxAndWhiskerCategoryDataset) d1.clone();
    assertTrue(d1 != d2);
    assertTrue(d1.getClass() == d2.getClass());
    assertTrue(d1.equals(d2));

    // test independence
    d1.add(new BoxAndWhiskerItem(new Double(1.0), new Double(2.0), new Double(3.0), new Double(4.0),
            new Double(5.0), new Double(6.0), new Double(7.0), new Double(8.0), new ArrayList()), "ROW2",
            "COLUMN1");
    assertFalse(d1.equals(d2));
}

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From source file:smellminer.engine.JFreeChartDemo.java

/**
 * Creates a sample dataset.//from   w  ww . j  av  a  2 s  . co  m
 * 
 * @return A sample dataset.
 */
public DefaultBoxAndWhiskerCategoryDataset createSampleDataset() {

    final int seriesCount = 3;
    final int categoryCount = 4;
    final int entityCount = 22;

    final DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    for (int i = 0; i < seriesCount; i++) {
        for (int j = 0; j < categoryCount; j++) {
            final List list = new ArrayList();
            // add some values...
            for (int k = 0; k < entityCount; k++) {
                final double value1 = 10.0 + Math.random() * 3;
                list.add(new Double(value1));
                final double value2 = 11.25 + Math.random(); // concentrate values in the middle
                list.add(new Double(value2));
            }
            LOGGER.debug("Adding series " + i);
            LOGGER.debug(list.toString());
            dataset.add(list, "Series " + i, " Type " + j);
        }

    }

    return dataset;
}

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From source file:org.jfree.chart.demo.BoxAndWhiskerDemo.java

/**
 * Creates a sample dataset./* ww w. j av  a2 s.  c  o  m*/
 * 
 * @return A sample dataset.
 */
private BoxAndWhiskerCategoryDataset createSampleDataset() {

    final int seriesCount = 3;
    final int categoryCount = 4;
    final int entityCount = 22;

    final DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    for (int i = 0; i < seriesCount; i++) {
        for (int j = 0; j < categoryCount; j++) {
            final List list = new ArrayList();
            // add some values...
            for (int k = 0; k < entityCount; k++) {
                final double value1 = 10.0 + Math.random() * 3;
                list.add(new Double(value1));
                final double value2 = 11.25 + Math.random(); // concentrate values in the middle
                list.add(new Double(value2));
            }
            LOGGER.debug("Adding series " + i);
            LOGGER.debug(list.toString());
            dataset.add(list, "Series " + i, " Type " + j);
        }

    }

    return dataset;
}

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From source file:sim.util.media.chart.BoxPlotGenerator.java

protected void buildChart() {
    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();

    // we build the chart manually rather than using ChartFactory
    // because we need to customize the getDataRange method below

    CategoryAxis categoryAxis = new CategoryAxis("");
    NumberAxis valueAxis = new NumberAxis("Untitled Y Axis");
    valueAxis.setAutoRangeIncludesZero(false);
    BoxAndWhiskerRenderer renderer = new BoxAndWhiskerRenderer();
    renderer.setBaseToolTipGenerator(new BoxAndWhiskerToolTipGenerator());
    CategoryPlot plot = new CategoryPlot(dataset, categoryAxis, valueAxis, renderer) {
        // Customizing this method in order to provide a bit of
        // vertical buffer.  Otherwise the bar chart box gets drawn
        // slightly off-chart, which looks really bad.

        public Range getDataRange(ValueAxis axis) {
            Range range = super.getDataRange(axis);
            if (range == null)
                return null;
            final double EXTRA_PERCENTAGE = 0.02;
            return Range.expand(range, EXTRA_PERCENTAGE, EXTRA_PERCENTAGE);
        }// www .j  a  v a2  s  . com
    };

    chart = new JFreeChart("Untitled Chart", JFreeChart.DEFAULT_TITLE_FONT, plot, false);
    ChartFactory.getChartTheme().apply(chart);

    chart.setAntiAlias(true);
    chartPanel = buildChartPanel(chart);
    setChartPanel(chartPanel);

    // this must come last because the chart must exist for us to set its dataset
    setSeriesDataset(dataset);
}

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