Example usage for org.jfree.data.statistics DefaultBoxAndWhiskerCategoryDataset DefaultBoxAndWhiskerCategoryDataset

Introduction

In this page you can find the example usage for org.jfree.data.statistics DefaultBoxAndWhiskerCategoryDataset DefaultBoxAndWhiskerCategoryDataset.

Prototype

public DefaultBoxAndWhiskerCategoryDataset() 

Source Link

Document

Creates a new dataset.

Usage

From source file:be.ugent.maf.cellmissy.gui.controller.analysis.singlecell.SingleCellAnalysisController.java

/**
 * Generate the dataset for the box plot with the track directionality
 * values./*from   w w  w.j  a v  a2s  .  c o m*/
 *
 * @return a DefaultBoxAndWhiskerCategoryDataset
 */
private DefaultBoxAndWhiskerCategoryDataset getDirecBoxPlotDataset() {
    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    singleCellMainController.getFilteringMap().keySet().stream().forEach((singleCellConditionDataHolder) -> {
        dataset.add(Arrays.asList(singleCellConditionDataHolder.getEndPointDirectionalityRatios()),
                singleCellConditionDataHolder.getPlateCondition().toString(), "");
    });
    return dataset;
}

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From source file:org.locationtech.udig.processingtoolbox.tools.BoxPlotDialog.java

private BoxAndWhiskerCategoryDataset getDataset(SimpleFeatureCollection features, String[] fields) {
    minMaxVisitor.reset();/* w  ww  .  j a  v a 2 s  .  c  om*/

    Expression[] expression = new Expression[fields.length];
    Map<String, List<Double>> listMap = new TreeMap<String, List<Double>>();
    for (int index = 0; index < expression.length; index++) {
        expression[index] = ff.property(fields[index]);
        listMap.put(fields[index], new ArrayList<Double>());
    }

    SimpleFeatureIterator featureIter = features.features();
    try {
        while (featureIter.hasNext()) {
            SimpleFeature feature = featureIter.next();
            for (int index = 0; index < expression.length; index++) {
                Double val = expression[index].evaluate(feature, Double.class);
                if (val == null || val.isNaN() || val.isInfinite()) {
                    continue;
                }
                minMaxVisitor.visit(val, val);
                listMap.get(fields[index]).add(val);
            }
        }
    } finally {
        featureIter.close();
    }

    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    for (int index = 0; index < fields.length; index++) {
        dataset.add(listMap.get(fields[index]), "Series1", fields[index]); //$NON-NLS-1$
    }
    return dataset;
}

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From source file:unalcol.termites.boxplots.BestAgentsPercentageInfoCollected.java

private BoxAndWhiskerCategoryDataset addDataSet(Hashtable<String, List> info) {
    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    for (String key : info.keySet()) {
        System.out.println(key + ":" + info.get(key).size());
        String[] keyData = key.split(Pattern.quote("+"));
        dataset.add(info.get(key), keyData[1], getTechniqueName(keyData[0]));
    }//from  w w  w.ja  v  a 2 s  . co m
    //System.out.println("dataset" + dataset);
    return dataset;
}

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From source file:com.diversityarrays.kdxplore.boxplot.BoxPlotPanel.java

private BoxAndWhiskerCategoryDataset createSampleDataSet(Bag<String> missingOrBad, Bag<String> suppressed,
        Double[] minMax) {/* w ww  .  j av  a  2  s  . c  o m*/
    final DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    seriesCountByTraitName.clear();

    minMax[0] = null;
    minMax[1] = null;
    int count = 0;
    for (TraitInstance instance : traitInstances) {

        TraitInstanceValueRetriever<?> y_tivr = tivrByTi.get(instance);
        String instanceName = traitNameStyle.makeTraitInstanceName(instance);

        List<Double> data = new ArrayList<Double>();

        for (PlotOrSpecimen pos : plotSpecimens) {
            Plot plot = plotInfoProvider.getPlotByPlotId(pos.getPlotId());
            if (plot == null || !plot.isActivated()) {
                continue;
            }

            TraitValue yTraitValue = y_tivr.getAttributeValue(plotInfoProvider, plot, null);
            if (yTraitValue == null || !(yTraitValue.comparable instanceof Number)) {
                missingOrBad.add(instanceName);
                continue;
            } else if (yTraitValue.suppressed) {
                // TODO count suppressed
                suppressed.add(instanceName);
                continue;
            }
            double y = ((Number) yTraitValue.comparable).doubleValue();
            data.add(y);

            if (minMax[0] == null) {
                minMax[0] = y;
                minMax[1] = y;
            } else {
                minMax[0] = Math.min(minMax[0], y);
                minMax[1] = Math.max(minMax[1], y);
            }
        }

        seriesCountByTraitName.put(instanceName, count);

        String columnKey = ""; // TODO use something better? //$NON-NLS-1$
        dataset.add(data, instanceName, columnKey);
        count++;
    }

    return dataset;
}

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From source file:msi.gama.outputs.layers.ChartLayerStatement.java

/**
 * create dataset for box_whisker chart// w w  w  . jav a2  s.co  m
 * @return A sample dataset.
 */
private BoxAndWhiskerCategoryDataset createWhisker(final IScope scope) {

    final CategoryPlot plot = (CategoryPlot) chart.getPlot();
    // final int seriesCount = 1;
    final int categoryCount = 3;
    final int entityCount = 2;

    final DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    for (int i = 0; i < datas.size(); i++) {
        // ChartData e = datas.get(i);
        for (int j = 0; j < categoryCount; j++) {
            final List list = new ArrayList();
            // add some values...
            for (int k = 0; k < entityCount; k++) {
                // list.add(new Double(k*2));
                // list.add(new Double(k*3));
                final double value1 = 10.0 + Math.random() * 3;
                list.add(new Double(value1));
                final double value2 = 11.25 + Math.random(); // concentrate values in the middle
                list.add(new Double(value2));
            }
            dataset.add(list, "Series " + i, " Type " + j);

            history.append("Series " + i);
            history.append(',');
        }
    }
    history.deleteCharAt(history.length() - 1);
    history.append(Strings.LN);
    plot.setDataset(dataset);
    chart.removeLegend();
    final CategoryAxis axis = plot.getDomainAxis();
    axis.setTickLabelFont(getTickFont());
    axis.setLabelFont(getLabelFont());
    // ((BarRenderer3D) plot.getRenderer()).setItemMargin(0.1);
    axis.setCategoryMargin(0.1);
    axis.setUpperMargin(0.05);
    axis.setLowerMargin(0.05);
    return dataset;
}

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From source file:jp.ac.tohoku.ecei.sb.metabolome.lims.gui.MainWindowController.java

public JFreeChart getChartForPlate(PlateImpl plate) {
    IntensityMatrixImpl intensityMatrix = dataManager.getIntensityMatrix();
    List<Injection> injections = intensityMatrix.getInjectionsByPlate().get(plate);

    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    for (Injection one : injections) {
        dataset.add(Arrays.asList(intensityMatrix.getColumn(one)).stream().map((o) -> ((Double) o))
                .collect(Collectors.toList()), "Intensity", one.toString());
    }// w w w.  j a  va 2s .  co  m
    JFreeChart chart = ChartFactory.createBoxAndWhiskerChart(plate.toString(), "Injection", "Intensity",
            dataset, true);
    chart.getCategoryPlot().getDomainAxis()
            .setCategoryLabelPositions(CategoryLabelPositions.createUpRotationLabelPositions(Math.PI / 2));
    return chart;
}

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From source file:jp.ac.tohoku.ecei.sb.metabolome.lims.gui.MainWindowController.java

public JFreeChart getChartForGlobalQC() {
    IntensityMatrixImpl intensityMatrix = dataManager.getIntensityMatrix();
    if (intensityMatrix == null)
        return null;
    List<Sample> globalQCList = intensityMatrix.getGlobalQCSamples();
    log.info("global QC {}", globalQCList.size());
    if (globalQCList.size() == 0)
        return null;
    List<Injection> injections = intensityMatrix.getInjectionsBySample(globalQCList.get(0));

    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    for (Injection one : injections) {
        dataset.add(Arrays.asList(intensityMatrix.getColumn(one)).stream().map((o) -> ((Double) o))
                .collect(Collectors.toList()), "Intensity", one.toString());
    }//from   w w  w.  j a v a 2s  .  c o m

    JFreeChart chart = ChartFactory.createBoxAndWhiskerChart("Global QC " + globalQCList.get(0).toString(),
            "Injection", "Intensity", dataset, true);
    chart.getCategoryPlot().getDomainAxis()
            .setCategoryLabelPositions(CategoryLabelPositions.createUpRotationLabelPositions(Math.PI / 2));
    return chart;
}

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From source file:playground.christoph.evacuation.analysis.EvacuationTimePictureWriter.java

private JFreeChart createBoxplotChart(List<Double> travelTimes) {

    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    dataset.add(travelTimes, "Series", "");

    JFreeChart chart = ChartFactory.createBoxAndWhiskerChart(null, null, "evacuation travel time", dataset,
            false);/* w w  w .j  a v a  2  s  . co  m*/
    chart.getCategoryPlot().setForegroundAlpha(0.75f);
    return chart;
}

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From source file:org.moeaframework.analysis.plot.Plot.java

/**
 * Displays the statistical results from an {@link AnalyzerResults} as a
 * box-and-whisker plot.//from   w  w w  .j a v a2  s. co m
 * 
 * @param result the {@code AnalyzerResults} instance
 * @return a reference to this {@code Plot} instance
 */
public Plot add(AnalyzerResults result) {
    createCategoryPlot();

    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();

    for (String algorithm : result.getAlgorithms()) {
        for (String indicator : result.get(algorithm).getIndicators()) {
            List<Double> values = new ArrayList<Double>();

            for (double value : result.get(algorithm).get(indicator).getValues()) {
                values.add(value);
            }

            dataset.add(values, algorithm, indicator);
        }
    }

    CategoryPlot plot = chart.getCategoryPlot();
    plot.setDataset(dataset);

    return this;
}

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From source file:org.sakaiproject.sitestats.impl.ServerWideReportManagerImpl.java

private BoxAndWhiskerCategoryDataset getHourlyUsageDataSet() {
    // log.info("Generating activityWeekBarDataSet");
    List<ServerWideStatsRecord> hourlyUsagePattern = getHourlyUsagePattern();
    if (hourlyUsagePattern == null) {
        return null;
    }// ww  w  .j  a v  a2 s  .com

    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();

    List[] hourList = new ArrayList[24];
    for (int ii = 0; ii < 24; ii++) {
        hourList[ii] = new ArrayList();
    }

    int totalDays = 0;
    Date prevDate = null;
    for (ServerWideStatsRecord regularUsers : hourlyUsagePattern) {
        Date currDate = (Date) regularUsers.get(0);
        if (!currDate.equals(prevDate)) {
            prevDate = currDate;
            totalDays++;
        }
        hourList[(Integer) regularUsers.get(1)].add((Long) regularUsers.get(2));
    }

    for (int ii = 0; ii < 24; ii++) {
        // add zero counts, when no data for the day
        for (int jj = hourList[ii].size(); jj < totalDays; jj++) {
            hourList[ii].add(Long.valueOf(0));
        }

        dataset.add(hourList[ii], "Last 30 days", "" + ii);
    }

    return dataset;
}

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