Download java genomics io Free Java Code

.classpath/*  www  .j  av a2  s .c  o m*/
.gitignore
.project
LICENSE
LICENSE.LESSER
META-INF/MANIFEST.MF
README.rdoc
build.xml
lib/BigWig.jar
lib/commons-lang3-3.1.jar
lib/commons-math3-3.0.jar
lib/hamcrest-core-1.1.0.jar
lib/jacocoant.jar
lib/junit.jar
lib/log4j-1.2.15.jar
lib/sam-1.67.jar
src/ed/javatools/BufferedRandomAccessFile.java
src/edu/ucsc/genome/TrackHeader.java
src/edu/ucsc/genome/TrackHeaderException.java
src/edu/unc/genomics/Assembly.java
src/edu/unc/genomics/BedEntry.java
src/edu/unc/genomics/BedGraphEntry.java
src/edu/unc/genomics/Contig.java
src/edu/unc/genomics/ContigException.java
src/edu/unc/genomics/GFFEntry.java
src/edu/unc/genomics/GeneTrackEntry.java
src/edu/unc/genomics/Interval.java
src/edu/unc/genomics/IntervalException.java
src/edu/unc/genomics/IntervalFactory.java
src/edu/unc/genomics/SAMEntry.java
src/edu/unc/genomics/Sequence.java
src/edu/unc/genomics/Strand.java
src/edu/unc/genomics/VCFEntry.java
src/edu/unc/genomics/ValuedInterval.java
src/edu/unc/genomics/io/BAMFileReader.java
src/edu/unc/genomics/io/BAMFileWriter.java
src/edu/unc/genomics/io/BedFileReader.java
src/edu/unc/genomics/io/BedFileWriter.java
src/edu/unc/genomics/io/BedGraphFileReader.java
src/edu/unc/genomics/io/BedGraphFileWriter.java
src/edu/unc/genomics/io/BigBedFileReader.java
src/edu/unc/genomics/io/BigWigFileReader.java
src/edu/unc/genomics/io/BufferedLineReader.java
src/edu/unc/genomics/io/ContigIndex.java
src/edu/unc/genomics/io/FixedStepContigIndex.java
src/edu/unc/genomics/io/GFFFileReader.java
src/edu/unc/genomics/io/GFFFileWriter.java
src/edu/unc/genomics/io/GeneTrackFileReader.java
src/edu/unc/genomics/io/IntervalFileFormatException.java
src/edu/unc/genomics/io/IntervalFileReader.java
src/edu/unc/genomics/io/IntervalFileSniffer.java
src/edu/unc/genomics/io/IntervalFileSnifferException.java
src/edu/unc/genomics/io/IntervalFileWriter.java
src/edu/unc/genomics/io/LineReader.java
src/edu/unc/genomics/io/LineReaderIterator.java
src/edu/unc/genomics/io/SAMEntryIterator.java
src/edu/unc/genomics/io/SAMFileReader.java
src/edu/unc/genomics/io/SAMFileWriter.java
src/edu/unc/genomics/io/StringIntervalIterator.java
src/edu/unc/genomics/io/TabixFileReader.java
src/edu/unc/genomics/io/TextIntervalFileReader.java
src/edu/unc/genomics/io/TextWigFileReader.java
src/edu/unc/genomics/io/VCFFileReader.java
src/edu/unc/genomics/io/VCFFileWriter.java
src/edu/unc/genomics/io/VariableStepContigIndex.java
src/edu/unc/genomics/io/WigFileException.java
src/edu/unc/genomics/io/WigFileFormatException.java
src/edu/unc/genomics/io/WigFileReader.java
src/edu/unc/genomics/io/WigFileWriter.java
src/edu/unc/genomics/util/ArrayUtils.java
src/edu/unc/genomics/util/ChecksumUtils.java
src/edu/unc/genomics/util/ExternalSort.java
src/edu/unc/genomics/util/FileUtils.java
src/edu/unc/genomics/util/Samtools.java
src/edu/unc/genomics/util/Tabix.java
src/log4j.properties
src/net/sf/samtools/TabixReader.java
src/net/sf/samtools/TabixWriter.java
test/edu/ucsc/genome/TrackHeaderTest.java
test/edu/unc/genomics/AssemblyTest.java
test/edu/unc/genomics/BedEntryTest.java
test/edu/unc/genomics/BedGraphEntryTest.java
test/edu/unc/genomics/FixedStepContigTest.java
test/edu/unc/genomics/GFFEntryTest.java
test/edu/unc/genomics/GeneTrackEntryTest.java
test/edu/unc/genomics/IntervalTest.java
test/edu/unc/genomics/VCFEntryTest.java
test/edu/unc/genomics/ValuedIntervalTest.java
test/edu/unc/genomics/VariableStepContigTest.java
test/edu/unc/genomics/io/AbstractBedFileReaderTest.java
test/edu/unc/genomics/io/AbstractIntervalFileReaderTest.java
test/edu/unc/genomics/io/AbstractSAMFileReaderTest.java
test/edu/unc/genomics/io/AbstractWigFileReaderTest.java
test/edu/unc/genomics/io/BAMFileReaderTest.java
test/edu/unc/genomics/io/BedFileReaderTest.java
test/edu/unc/genomics/io/BedGraphFileReaderTest.java
test/edu/unc/genomics/io/BigBedFileReaderTest.java
test/edu/unc/genomics/io/BigWigFileReaderTest.java
test/edu/unc/genomics/io/GFFFileReaderTest.java
test/edu/unc/genomics/io/GeneTrackFileReaderTest.java
test/edu/unc/genomics/io/IntervalFileSnifferTest.java
test/edu/unc/genomics/io/SAMFileReaderTest.java
test/edu/unc/genomics/io/TextWigFileReaderTest.java
test/edu/unc/genomics/io/VCFFileReaderTest.java
test/edu/unc/genomics/util/ChecksumUtilsTest.java
test/edu/unc/genomics/util/FileUtilsTest.java
test/edu/unc/genomics/util/SamtoolsTest.java
test/edu/unc/genomics/util/TabixTest.java
test/fixtures/invalid.bed
test/fixtures/test.bam
test/fixtures/test.bb
test/fixtures/test.bed
test/fixtures/test.bed.sorted
test/fixtures/test.bedGraph
test/fixtures/test.bw
test/fixtures/test.fa
test/fixtures/test.genetrack
test/fixtures/test.gff
test/fixtures/test.len
test/fixtures/test.sam
test/fixtures/test.tabix.bed.gz
test/fixtures/test.tabix.bed.gz.tbi
test/fixtures/test.vcf
test/fixtures/test.wig
test/net/sf/samtools/TabixReaderTest.java