Download Phenoscape Data Loader Free Java Code

Description

Data processing utilities for assembling the legacy OBD based Phenoscape knowledgebase.

Source Files

The download file PhenoscapeDataLoader-master.zip has the following entries.


.classpath/*from   w  w w  .  j  a  v a2s .co m*/
.gitignore
.project
LICENSE
build.xml
lib/BrowserLauncher2-10rc4.jar
lib/antlr-runtime-3.0.jar
lib/apache-solr-core-4.0-2011-09-16_08-37-32.jar
lib/apache-solr-solrj-4.0-2011-09-16_08-37-32.jar
lib/arq.jar
lib/aterm-java-1.6.jar
lib/batik-anim.jar
lib/batik-awt-util.jar
lib/batik-bridge.jar
lib/batik-css.jar
lib/batik-dom.jar
lib/batik-ext.jar
lib/batik-gvt.jar
lib/batik-parser.jar
lib/batik-script.jar
lib/batik-svg-dom.jar
lib/batik-svggen.jar
lib/batik-util.jar
lib/batik-xml.jar
lib/bbop.jar
lib/beansbinding-1.2.1.jar
lib/biojava.jar
lib/commons-codec-1.4.jar
lib/commons-fileupload-1.2.1.jar
lib/commons-httpclient-3.1.jar
lib/commons-io-1.4.jar
lib/commons-lang-2.4.jar
lib/commons-logging-1.1.1.jar
lib/debug.jar
lib/glazedlists-1.7.0_java15.jar
lib/hsqldb.jar
lib/idw-gpl.jar
lib/jazzy-core.jar
lib/jcl-over-slf4j-1.5.5.jar
lib/jdom.jar
lib/jena.jar
lib/jgrapht-jdk1.5.jar
lib/jh.jar
lib/jhall.jar
lib/jlibeps.jar
lib/jpl.jar
lib/jsr173_1.0_api.jar
lib/junit-4.5.jar
lib/jwf-1.0.1.jar
lib/log4j-1.2.15.jar
lib/lucene-analyzers-2.9.3.jar
lib/lucene-core-2.9.3.jar
lib/lucene-highlighter-2.9.3.jar
lib/lucene-snowball-2.9.3.jar
lib/lucene-spellchecker-2.9.3.jar
lib/macify-1.1.jar
lib/mysql-connector-java-5.1.5-bin.jar
lib/nexmlbeans-dict.jar
lib/nexmlbeans2009.jar
lib/obdapi.jar
lib/obo-vocab.jar
lib/obo.jar
lib/oboedit.jar
lib/owlapi-api.jar
lib/owlapi-apibinding.jar
lib/owlapi-change.jar
lib/owlapi-debugging.jar
lib/owlapi-dig1_1.jar
lib/owlapi-functionalparser.jar
lib/owlapi-functionalrenderer.jar
lib/owlapi-impl.jar
lib/owlapi-krssparser.jar
lib/owlapi-mansyntaxparser.jar
lib/owlapi-mansyntaxrenderer.jar
lib/owlapi-metrics.jar
lib/owlapi-oboparser.jar
lib/owlapi-owlxmlparser.jar
lib/owlapi-owlxmlrenderer.jar
lib/owlapi-rdfapi.jar
lib/owlapi-rdfxmlparser.jar
lib/owlapi-rdfxmlrenderer.jar
lib/owlapi-util.jar
lib/pellet.jar
lib/phenex.jar
lib/phenoxmlbeans.jar
lib/piccolo.jar
lib/piccolox.jar
lib/postgresql-8.2-506.jdbc3.jar
lib/prompt.jar
lib/relaxngDatatype.jar
lib/resolver.jar
lib/serializer.jar
lib/servlet-api-2.4.jar
lib/slf4j-api-1.6.1.jar
lib/slf4j-jdk14-1.6.1.jar
lib/slf4j-log4j12-1.6.1.jar
lib/slf4j-simple-1.6.1.jar
lib/swing-layout.jar
lib/swing-worker-1.2.jar
lib/swingx-2007_10_14.jar
lib/tablelayout.jar
lib/wstx-asl-3.2.7.jar
lib/xbean.jar
lib/xercesImpl.jar
lib/xml-apis-ext.jar
lib/xml-apis.jar
lib/xsdlib-1.5.jar
lib/xsdlib.jar
src/org/phenoscape/obd/loader/.gitignore
src/org/phenoscape/obd/loader/AbsentPhenotypesLoader.java
src/org/phenoscape/obd/loader/AnatomyXrefModifier.java
src/org/phenoscape/obd/loader/AttributePhenotypesLoader.java
src/org/phenoscape/obd/loader/HomologyObdBridge.java
src/org/phenoscape/obd/loader/OBDModelBridge.java
src/org/phenoscape/obd/loader/OBDPublicationBridge.java
src/org/phenoscape/obd/loader/OBDUtil.java
src/org/phenoscape/obd/loader/PhenoscapeDataLoader.java
src/org/phenoscape/obd/loader/PublicationLoader.java
src/org/phenoscape/obd/loader/SolrClearer.java
src/org/phenoscape/obd/loader/SolrGeneAnnotationLoader.java
src/org/phenoscape/obd/loader/SolrGeneLoader.java
src/org/phenoscape/obd/loader/SolrPhenotypeAnnotationLoader.java
src/org/phenoscape/obd/loader/SolrPhenotypeLoader.java
src/org/phenoscape/obd/loader/SolrPublicationLoader.java
src/org/phenoscape/obd/loader/SolrTaxonLoader.java
src/org/phenoscape/obd/loader/Vocab.java
src/org/phenoscape/obd/loader/ZFINGOAnnotationsLoader.java
src/org/phenoscape/obd/loader/ZFINPublicationsLoader.java
src/org/phenoscape/obd/loader/ZfinObdBridge.java
src/org/phenoscape/obd/loader/ZfinXrefModifier.java
src/org/phenoscape/obd/loader/connection.template.properties

Download

Click the following link to download PhenoscapeDataLoader-master.zip.

PhenoscapeDataLoader-master.zip




















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