Example usage for org.apache.commons.io FilenameUtils concat

Introduction

In this page you can find the example usage for org.apache.commons.io FilenameUtils concat.

Prototype

public static String concat(String basePath, String fullFilenameToAdd) 

Source Link

Document

Concatenates a filename to a base path using normal command line style rules.

Usage

From source file:edu.cornell.med.icb.goby.alignments.TestIterateSortedAlignment.java

@Test
public void testIterateSorted() throws IOException {

    final String basename = "align-skip-to-1-concat";
    final String basenamePath = FilenameUtils.concat(BASE_TEST_DIR, basename);
    final AlignmentWriterImpl writer = new AlignmentWriterImpl(basenamePath);
    writer.setNumAlignmentEntriesPerChunk(1);

    final int numTargets = 3;
    final int[] targetLengths = new int[numTargets];

    for (int referenceIndex = 0; referenceIndex < numTargets; referenceIndex++) {
        targetLengths[referenceIndex] = 1000;
    }//from  w  ww. ja v a 2 s .co m
    writer.setTargetLengths(targetLengths);
    // we write this alignment sorted:

    writer.setSorted(true);
    Alignments.AlignmentEntry.Builder newEntry;

    newEntry = prepareAlignmentEntry(0, 1, 1, 30, false, new int[0]);
    writer.appendEntry(newEntry.build());

    newEntry = prepareAlignmentEntry(0, 1, 130, 30, false, new int[] { 11, 12 });
    writer.appendEntry(newEntry.build());

    newEntry = prepareAlignmentEntry(0, 1, 135, 35, false, new int[] { 6 });
    writer.appendEntry(newEntry.build());

    newEntry = prepareAlignmentEntry(0, 2, 1230, 30, false, new int[0]);
    writer.appendEntry(newEntry.build());

    newEntry = prepareAlignmentEntry(0, 2, 3000, 30, false, new int[0]);
    writer.appendEntry(newEntry.build());

    writer.close();
    writer.printStats(System.out);

    final Int2IntMap positionMap = new Int2IntOpenHashMap();

    IterateSortedAlignmentsListImpl iterator = new IterateSortedAlignmentsListImpl() {

        @Override
        public void processPositions(int referenceIndex, int intermediatePosition,
                DiscoverVariantPositionData positionBaseInfos) {
            // store one-based positions:
            positionMap.put(intermediatePosition + 1, positionBaseInfos.size());
            System.out.printf("position: %d listSize: %d%n", referenceIndex, positionBaseInfos.size());
        }
    };
    iterator.iterate(basenamePath);

    for (int i = 1; i < 35; i++) {
        assertEquals("[i=" + i + "] position " + i, 1, positionMap.get(i));
    }
    for (int i = 130; i < 135; i++) {
        assertEquals("[i=" + i + "] position " + i, 1, positionMap.get(i));
    }
    for (int i = 135; i < 165; i++) {
        assertEquals("[i=" + i + "] position " + i, 2, positionMap.get(i));
    }
    for (int i = 165; i < 170; i++) {
        assertEquals("[i=" + i + "] position " + i, 1, positionMap.get(i));
    }
    for (int i = 1230; i < 1265; i++) {
        assertEquals("[i=" + i + "] position " + i, 1, positionMap.get(i));
    }
    for (int i = 3000; i < 3035; i++) {
        assertEquals("[i=" + i + "] position " + i, 1, positionMap.get(i));
    }
}

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From source file:io.wcm.devops.conga.generator.util.FileUtil.java

/**
 * Get template path for a role file.//ww  w . j a  va2 s.c o  m
 * @param role Role
 * @param roleFile Role file
 * @return Path or null if not defined
 */
public static String getTemplatePath(Role role, RoleFile roleFile) {
    String path = roleFile.getTemplate();
    if (StringUtils.isEmpty(path)) {
        return null;
    }
    if (StringUtils.isNotEmpty(role.getTemplateDir())) {
        path = FilenameUtils.concat(role.getTemplateDir(), path);
    }
    return path;
}

---

From source file:biz.dfch.j.graylog.plugin.filter.metricsValidation.java

public metricsValidation() throws IOException, URISyntaxException {
    try {//from   ww  w  .j a  v  a2 s. co  m
        LOG.debug(String.format("[%d] Initialising plugin ...\r\n", Thread.currentThread().getId()));

        // get config file
        CodeSource codeSource = this.getClass().getProtectionDomain().getCodeSource();
        URI uri = codeSource.getLocation().toURI();

        // String path = uri.getSchemeSpecificPart();
        // path would contain absolute path including jar file name with extension
        // String path = FilenameUtils.getPath(uri.getPath());
        // path would contain relative path (no leading '/' and no jar file name

        String path = FilenameUtils.getPath(uri.getPath());
        if (!path.startsWith("/")) {
            path = String.format("/%s", path);
        }
        String baseName = FilenameUtils.getBaseName(uri.getSchemeSpecificPart());
        if (null == baseName || baseName.isEmpty()) {
            baseName = this.getClass().getPackage().getName();
        }

        // get config values
        configurationFileName = FilenameUtils.concat(path, baseName + ".conf");
        JSONParser jsonParser = new JSONParser();
        LOG.info(String.format("Loading configuration file '%s' ...", configurationFileName));
        Object object = jsonParser.parse(new FileReader(configurationFileName));

        JSONObject jsonObject = (JSONObject) object;
        String pluginPriority = (String) jsonObject.get(DF_PLUGIN_PRIORITY);
        Boolean pluginDropMessage = (Boolean) jsonObject.get(DF_PLUGIN_DROP_MESSAGE);
        Boolean pluginDisabled = (Boolean) jsonObject.get(DF_PLUGIN_DISABLED);
        //            metrics = (HashMap) jsonObject.get("metrics");
        //            String fieldName = "cpu.average";
        //            Set<String> keys = metrics.keySet();
        //            for(String key : keys)
        //            {
        //                Map metric = (Map) metrics.get(key);
        //                LOG.info(String.format("%s [type %s] [range %s .. %s]", key, metric.get("type").toString(), metric.get("minValue").toString(), metric.get("maxValue").toString()));
        //            }
        // set configuration
        Map<String, Object> map = new HashMap<>();
        map.put(DF_PLUGIN_PRIORITY, pluginPriority);
        map.put(DF_PLUGIN_DROP_MESSAGE, pluginDropMessage);
        map.put(DF_PLUGIN_DISABLED, pluginDisabled);
        //map.put(DF_PLUGIN_METRICS, metrics);

        initialize(new Configuration(map));
    } catch (IOException ex) {
        LOG.error(String.format("[%d] Initialising plugin FAILED. Filter will be disabled.\r\n%s\r\n",
                Thread.currentThread().getId(), ex.getMessage()));
        LOG.error("*** " + DF_PLUGIN_NAME + "::dfchBizExecScript() - IOException - Filter will be disabled.");
        ex.printStackTrace();
    } catch (Exception ex) {
        LOG.error(String.format("[%d] Initialising plugin FAILED. Filter will be disabled.\r\n",
                Thread.currentThread().getId()));
        LOG.error("*** " + DF_PLUGIN_NAME + "::dfchBizExecScript() - Exception - Filter will be disabled.");
        ex.printStackTrace();
    }
}

---

From source file:com.abiquo.am.services.DiskFileServiceImpl.java

/**
 * Or return DISK_FILE_NOT_FOUND/*ww  w .  j a va  2 s .  co m*/
 */
private File getFile(final String path) {
    File file = new File(FilenameUtils.concat(repositoryPath, path));

    if (!file.exists()) {
        throw new AMException(AMError.DISK_FILE_NOT_FOUND, path);
    }

    return file;
}

---

From source file:net.sf.jvifm.Main.java

public static boolean createFileLock() {
    File lockFile = new File(FilenameUtils.concat(HomeLocator.getConfigHome(), ".lock"));
    try {//from   ww w  .j a  v a2s  .  c  o m
        FileChannel channel = new RandomAccessFile(lockFile, "rw").getChannel();
        fileLock = channel.tryLock();
        if (fileLock != null) {
            return true;
        }
    } catch (Exception e) {
    }
    return false;
}

---

From source file:net.ageto.gyrex.impex.console.internal.ImpexConsoleCommands.java

/**
 * Reads properties from file//from w  w  w . j  av  a  2 s  . c o  m
 *
 * @param configSourcePath
 * @param context 
 * @return
 */
public static boolean initPropertiesFile(String configSourcePath, IRuntimeContext context) {

    String propertiesFilename = FilenameUtils.concat(configSourcePath, DEFAULT_PROPERY_FILENAME);

    File propertiesFile = new File(propertiesFilename);

    if (!propertiesFile.exists()) {
        System.err.println(propertiesFilename + " file does not exist. Aborting");
        return false;
    }

    URI propertiesUri = propertiesFile.toURI();
    URL propertiesUrl;

    try {
        propertiesUrl = propertiesUri.toURL();
    } catch (MalformedURLException e) {
        System.err.println("File could not be read." + e);
        return false;
    }

    ConfigureRepositoryPreferences.readRepositoryPreferences(propertiesUrl, CASSANDRA_REPOSITORY_ID, context);

    System.out.println(propertiesFilename + " file processed successfully.");

    return true;
}

---

From source file:jp.co.opentone.bsol.linkbinder.util.AttachmentUtil.java

/**
 * ?????./*from  w  ww  .  jav a  2 s  .com*/
 * @param key Key
 * @return ?????
 */
public static String createFileName(String key) {
    return FilenameUtils.concat(getRoot().getAbsolutePath(), key);
}

---

From source file:com.enderville.enderinstaller.util.InstallScript.java

/**
 * Unpacks all the contents of the old minecraft.jar to the temp directory.
 *
 * @param tmpdir The temp directory to unpack to.
 * @param mcjar The location of the old minecraft.jar
 * @throws IOException//w w w .j  ava 2  s  .  c om
 */
public static void unpackMCJar(File tmpdir, File mcjar) throws IOException {
    byte[] dat = new byte[4 * 1024];
    JarFile jar = new JarFile(mcjar);
    Enumeration<JarEntry> entries = jar.entries();
    while (entries.hasMoreElements()) {
        JarEntry entry = entries.nextElement();
        String name = entry.getName();
        //This gets rid of META-INF if it exists.
        if (name.startsWith("META-INF")) {
            continue;
        }
        InputStream in = jar.getInputStream(entry);
        File dest = new File(FilenameUtils.concat(tmpdir.getPath(), name));
        if (entry.isDirectory()) {
            //I don't think this actually happens
            LOGGER.warn("Found a directory while iterating over jar.");
            dest.mkdirs();
        } else if (!dest.getParentFile().exists()) {
            if (!dest.getParentFile().mkdirs()) {
                throw new IOException("Couldn't create directory for " + name);
            }
        }
        FileOutputStream out = new FileOutputStream(dest);
        int len = -1;
        while ((len = in.read(dat)) > 0) {
            out.write(dat, 0, len);
        }
        out.flush();
        out.close();
        in.close();
    }
}

---

From source file:com.blueverdi.rosietheriveter.AlbumPageFactory.java

public AlbumPage getAlbumPage(int index) {
    if (index < 0) {
        throw new IllegalArgumentException("index < 0");
    }/*ww  w .j av  a  2  s  . co  m*/
    if (index >= imageFiles.length) {
        throw new IllegalArgumentException("index too large");
    }
    AlbumPage ret = new AlbumPage();
    ret.BitmapName = getBitmapName(imageFiles[index]);
    ret.bitmap = getBitmapFromAssets(ret.BitmapName);
    String audioFileName = FilenameUtils.concat(audioSource,
            FilenameUtils.getBaseName(imageFiles[index]) + ".mp3");
    ret.mp3 = null;
    try {
        context.getAssets().open(audioFileName);
        ret.mp3 = audioFileName;

    } catch (IOException ex) {

    }
    return ret;
}

---

From source file:edu.cornell.med.icb.goby.counts.TestPeakAggregator.java

@Test
public void testHasNext() throws IOException {
    final String basename = FilenameUtils.concat(BASE_TEST_DIR, "counts-101.bin");
    writeSomeCounts(basename);// w w  w  .j  a  v  a 2s  .  c  om
    final CountsReader countReader = new CountsReader(new FileInputStream(basename));
    final PeakAggregator peakIterator = new PeakAggregator(countReader);
    assertTrue(peakIterator.hasNext());
    peakIterator.next();
    assertTrue(peakIterator.hasNext());
    peakIterator.next();
    assertFalse(peakIterator.hasNext());
    try {
        peakIterator.next();
    } catch (NoSuchElementException e) {
        // we expect this
        return;
    }
    fail("Expected an exception when calling next too many times");
}

---

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