Example usage for org.apache.commons.io FilenameUtils concat

Introduction

In this page you can find the example usage for org.apache.commons.io FilenameUtils concat.

Prototype

public static String concat(String basePath, String fullFilenameToAdd) 

Source Link

Document

Concatenates a filename to a base path using normal command line style rules.

Usage

From source file:io.insideout.stanbol.enhancer.nlp.freeling.Freeling.java

@SuppressWarnings("unchecked")
public Freeling(final String configurationPath, final String configurationFilenameSuffix,
        final String freelingSharePath, final String freelingLibPath, final String locale,
        final int maxInitThreads, final int poolSize, final int minQueueSize) {
    //determine the supported languages
    File configDir = new File(configurationPath);
    if (!configDir.isDirectory()) {
        throw new IllegalArgumentException(
                "The parsed configDirectory '" + configDir + "' is not a directory!");
    }/*from  w  ww. j a v a 2s .c  o  m*/
    log.info("Reading Freeling Configuration from Directory: {}", configDir);
    Map<String, File> supportedLanguages = new HashMap<String, File>();
    String langIdConfigFile = null;
    if (configDir.isDirectory()) {
        for (File confFile : (Collection<File>) FileUtils.listFiles(configDir,
                new SuffixFileFilter(configurationFilenameSuffix), null)) {
            Properties prop = new Properties();
            InputStream in = null;
            try {
                in = new FileInputStream(confFile);
                prop.load(in);
                String lang = prop.getProperty("Lang");
                String langIdentFileName = prop.getProperty("LangIdentFile");
                if (lang != null) { //not a Analyzer config
                    File existing = supportedLanguages.get(lang);
                    if (existing == null) {
                        log.info(" ... adding language '{}' with config {}", lang, confFile);
                        supportedLanguages.put(lang, confFile);
                    } else { //two configs for the same language
                        //take the one that is more similar to the language name
                        int eld = StringUtils.getLevenshteinDistance(lang,
                                FilenameUtils.getBaseName(existing.getName()));
                        int cld = StringUtils.getLevenshteinDistance(lang,
                                FilenameUtils.getBaseName(confFile.getName()));
                        if (cld < eld) {
                            log.info(" ... setting language '{}' to config {}", lang, confFile);
                            supportedLanguages.put(lang, confFile);
                        }
                    }
                } else if (langIdentFileName != null) {
                    if (langIdentFileName.startsWith("$FREELING")) {
                        langIdentFileName = FilenameUtils.concat(freelingSharePath,
                                langIdentFileName.substring(langIdentFileName.indexOf(File.separatorChar) + 1));
                    }
                    if (langIdConfigFile != null) {
                        log.warn(
                                "Multiple LanguageIdentification configuration files. "
                                        + "Keep using '{}' and ignore '{}'!",
                                langIdConfigFile, langIdentFileName);
                    } else {
                        log.info(" ... setting language identification config to '{}'", langIdentFileName);
                        langIdConfigFile = langIdentFileName;
                    }
                }
            } catch (IOException e) {
                log.error("Unable to read configuration file " + confFile, e);
            } finally {
                IOUtils.closeQuietly(in);
            }
        }
    }
    //init the ThreadPool used to create Freeling components
    //this is mainly needed for beeing able to ensure that only one Freeling
    //component is created at a time. This may be necessary in some
    //environment to avoid random crashes.
    freelingInitThreadPool = Executors
            .newFixedThreadPool(maxInitThreads <= 0 ? DEFAULT_CONCURRENT_THREADS : maxInitThreads);
    //Init the Analyzers
    if (supportedLanguages.isEmpty()) {
        log.warn("The parsed configDirectory '{}' does not contain any valid "
                + "language configuration (*.{}) files!", configDir, configurationFilenameSuffix);
    } else {
        AnalyzerFactory analyzerFactory = new AnalyzerFactory(freelingLibPath, freelingSharePath, locale,
                freelingInitThreadPool);
        //now init the ResourcePool(s)
        log.info("init ResourcePools (size: " + poolSize + ")");
        for (Entry<String, File> supported : supportedLanguages.entrySet()) {
            Map<String, Object> context = new HashMap<String, Object>();
            context.put(AnalyzerFactory.PROPERTY_LANGUAGE, supported.getKey());
            context.put(AnalyzerFactory.PROPERTY_CONFIG_FILE, supported.getValue());
            log.debug(" ... create ResourcePool for {}", context);
            analyzerPools.put(supported.getKey(),
                    new ResourcePool<Analyzer>(poolSize, minQueueSize, analyzerFactory, context));
        }
    }
    if (langIdConfigFile == null) {
        log.warn(
                "The parsed configDirectory '{}' does not contain the "
                        + "Language Identification Component configuration (a *.{}) file! "
                        + "Language Identification Service will not ba available.",
                configDir, configurationFilenameSuffix);
        langIdPool = null;
    } else {
        LangIdFactory langIdFactory = new LangIdFactory(freelingLibPath, langIdConfigFile, locale,
                freelingInitThreadPool);
        //Finally init the language identifier resource pool
        langIdPool = new ResourcePool<LanguageIdentifier>(poolSize, minQueueSize, langIdFactory, null);
    }
}

---

From source file:com.abiquo.am.services.TemplateService.java

private TemplateDto fixFilePathWithRelativeTemplatePath(final TemplateDto ovfpi,
        final String relativePackagePath) {
    String diskPath = ovfpi.getDiskFilePath();
    if (diskPath.startsWith("http://")) {
        diskPath = diskPath.substring(diskPath.lastIndexOf('/') + 1);
    }//w ww .j  av a2  s . c o m

    ovfpi.setDiskFilePath(FilenameUtils.concat(relativePackagePath, diskPath));

    return ovfpi;
}

---

From source file:com.mbrlabs.mundus.core.kryo.KryoManager.java

/**
 * Loads a scene./*from   www.  j  av a 2s . co m*/
 *
 * Does however not initialize ModelInstances, Terrains, ... ->
 * ProjectManager
 *
 * @param context
 *            project context of the scene
 * @param sceneName
 *            name of the scene to load
 * @return loaded scene
 * @throws FileNotFoundException
 */
public SceneDescriptor loadScene(ProjectContext context, String sceneName) throws FileNotFoundException {
    String sceneDir = FilenameUtils.concat(context.path + "/" + ProjectManager.PROJECT_SCENES_DIR,
            sceneName + ProjectManager.PROJECT_SCENE_EXTENSION);

    Input input = new Input(new FileInputStream(sceneDir));
    SceneDescriptor sceneDescriptor = kryo.readObjectOrNull(input, SceneDescriptor.class);
    return sceneDescriptor;
}

---

From source file:com.stgmastek.core.logic.ExecutionOrder.java

/**
 * Saves the state of the batch for revision runs usage 
 * If the current batch is 1000 and revision is 1 then the file would 
 * be saved as '1000_1.savepoint' //from   w  w  w .  j  ava 2s .co  m
 * 
 * @param batchContext
 *         The job batchContext of the batch 
 * @throws BatchException
 *          Any exception occurred during the serialization process 
 */
public static synchronized void saveBatchState(BatchContext batchContext) throws BatchException {
    BatchInfo toSaveBatchInfo = batchContext.getBatchInfo();
    toSaveBatchInfo.setProgressLevelAtLastSavePoint(
            (ProgressLevel) ProgressLevel.getProgressLevel(toSaveBatchInfo.getBatchNo()).clone()); //clone is necessary as ProgresLevel is static
    if (logger.isDebugEnabled()) {
        logger.debug("Saving Current Batch progress level as ==>"
                + ProgressLevel.getProgressLevel(toSaveBatchInfo.getBatchNo()).toString());
    }
    String savepointFilePath = Configurations.getConfigurations().getConfigurations("CORE", "SAVEPOINT",
            "DIRECTORY");
    ObjectOutputStream oos = null;
    try {
        oos = new ObjectOutputStream(new FileOutputStream(FilenameUtils.concat(savepointFilePath,
                toSaveBatchInfo.getBatchNo() + "_" + toSaveBatchInfo.getBatchRevNo() + ".savepoint")));
        oos.writeObject(toSaveBatchInfo);
        oos.flush();
        batchContext.setBatchStateSaved(true);
    } catch (FileNotFoundException e) {
        batchContext.setBatchStateSaved(false);
        logger.error(e);
        throw new BatchException(e.getMessage(), e);
    } catch (IOException e) {
        batchContext.setBatchStateSaved(false);
        logger.error(e);
        throw new BatchException(e.getMessage(), e);
    } finally {
        IOUtils.closeQuietly(oos);
    }
}

---

From source file:edu.cornell.med.icb.goby.alignments.TestIterateSortedAlignment.java

@Test
public void testIterateSortedTwoMutationsSmall() throws IOException {

    final String basename = "align-skip-to-1-concat-two-mutations-small";
    final String basenamePath = FilenameUtils.concat(BASE_TEST_DIR, basename);
    final AlignmentWriterImpl writer = new AlignmentWriterImpl(basenamePath);
    writer.setNumAlignmentEntriesPerChunk(1);

    final int numTargets = 3;
    final int[] targetLengths = new int[numTargets];

    for (int referenceIndex = 0; referenceIndex < numTargets; referenceIndex++) {
        targetLengths[referenceIndex] = 1000;
    }/*w  w w  . jav  a 2s. co m*/
    writer.setTargetLengths(targetLengths);
    // we write this alignment sorted:

    writer.setSorted(true);
    Alignments.AlignmentEntry.Builder newEntry;

    newEntry = prepareAlignmentEntry(0, 1, 100, 3, true, new int[] { 2, 4 }, 5);
    writer.appendEntry(newEntry.build());

    writer.close();
    writer.printStats(System.out);

    final IntSet variantReadIndices = new IntOpenHashSet();
    final IntSet variantPositionOnRef = new IntOpenHashSet();
    IterateSortedAlignmentsListImpl iterator = new IterateSortedAlignmentsListImpl() {

        public void processPositions(int referenceIndex, int intermediatePosition,
                DiscoverVariantPositionData positionBaseInfos) {

        }

        @Override
        public void observeVariantBase(ConcatSortedAlignmentReader sortedReaders,
                Alignments.AlignmentEntry alignmentEntry,
                Int2ObjectMap<DiscoverVariantPositionData> positionToBases, Alignments.SequenceVariation var,
                char toChar, char fromChar, byte toQual, int currentReferenceIndex, int currentRefPosition,
                int currentReadIndex) {
            variantReadIndices.add(currentReadIndex);
            variantPositionOnRef.add(currentRefPosition);
        }

    };
    iterator.iterate(basenamePath);

    assertTrue(variantReadIndices.contains(2));
    assertTrue(variantReadIndices.contains(4));
    assertTrue(variantPositionOnRef.contains(101));
    assertTrue(variantPositionOnRef.contains(103));

}

---

From source file:es.urjc.mctwp.bbeans.research.image.SelectImagesToImport.java

/**
 * Retrieve thumbnails from temp collection and stores its content 
 * into web context user folder. It cleans previous images.
 *//*  www. ja v  a  2 s  .  c o  m*/
private void populateThumbNails() {
    List<ThumbNail> aux = null;
    getSession().cleanUserTempDirectory();

    Command cmd = getCommand(LoadThumbsOfTemporalImages.class);
    ((LoadThumbsOfTemporalImages) cmd).setTempColl(folder);
    cmd = runCommand(cmd);
    aux = ((LoadThumbsOfTemporalImages) cmd).getResult();

    if (aux != null) {

        thumbs = new ArrayList<ThumbSelectItem>();
        for (ThumbNail tn : aux) {

            //Copy content from collection to web context user folder
            try {
                FileUtils.copyFileToDirectory(tn.getContent(), getSession().getThumbDir());
                File th = new File(
                        FilenameUtils.concat(getSession().getRelativeThumbDir(), tn.getContent().getName()));
                tn.setContent(th);

                ThumbSelectItem tsi = new ThumbSelectItem();
                tsi.setThumbId(tn.getId());
                tsi.setPath(tn.getContent().getPath());

                if (tn.getPatInfo() != null) {
                    tsi.setPatName(tn.getPatInfo().getName());
                    tsi.setPatCode(tn.getPatInfo().getCode());
                    tsi.setStdCode(tn.getPatInfo().getStudy());
                }

                thumbs.add(tsi);
            } catch (IOException e) {
            }
        }

        Collections.sort(thumbs);
    }
}

---

From source file:edu.cornell.med.icb.goby.alignments.TestSkipTo.java

@Test
public void testFewSkips2() throws IOException {
    final String basename = "align-skip-to-2";
    final AlignmentWriterImpl writer = new AlignmentWriterImpl(FilenameUtils.concat(BASE_TEST_DIR, basename));
    writer.setNumAlignmentEntriesPerChunk(numEntriesPerChunk);

    final int numTargets = 3;
    final int[] targetLengths = new int[numTargets];

    for (int referenceIndex = 0; referenceIndex < numTargets; referenceIndex++) {
        targetLengths[referenceIndex] = 1000;
    }/*from   w  ww .j  a v  a2 s  . c  om*/
    writer.setTargetLengths(targetLengths);
    // we write this alignment sorted:

    writer.setSorted(true);

    writer.setAlignmentEntry(0, 1, 12, 30, false, constantQueryLength);
    writer.appendEntry();

    writer.setAlignmentEntry(0, 1, 13, 30, false, constantQueryLength);
    writer.appendEntry();

    writer.setAlignmentEntry(0, 1, 13, 30, false, constantQueryLength);
    writer.appendEntry();

    writer.setAlignmentEntry(0, 2, 123, 30, false, constantQueryLength);
    writer.appendEntry();
    writer.setAlignmentEntry(0, 2, 300, 30, false, constantQueryLength);
    writer.appendEntry();
    writer.setAlignmentEntry(0, 2, 300, 30, false, constantQueryLength);
    writer.appendEntry();
    writer.close();
    writer.printStats(System.out);

    final AlignmentReader reader = new AlignmentReaderImpl(FilenameUtils.concat(BASE_TEST_DIR, basename));

    final Alignments.AlignmentEntry c = reader.skipTo(2, 0);
    assertEquals(2, c.getTargetIndex());
    assertEquals(123, c.getPosition());

    final Alignments.AlignmentEntry d = reader.skipTo(2, 300);
    assertEquals(2, d.getTargetIndex());
    assertEquals(300, d.getPosition());

    final Alignments.AlignmentEntry e = reader.skipTo(2, 300);
    assertEquals(2, e.getTargetIndex());
    assertEquals(300, e.getPosition());
    assertFalse(reader.hasNext());

}

---

From source file:com.r573.enfili.ws.client.WsRestClient.java

public File postAndDownloadFile(String path, Object postObj, File downloadDir, ArrayList<String> acceptTypes) {
    String postObjJson = JsonHelper.toJson(postObj);
    log.debug("POST JSON " + postObjJson);

    WebResource.Builder builder = jerseyClient.resource(baseUrl + path).type(MediaType.APPLICATION_JSON_TYPE);
    builder = addAcceptTypes(builder, acceptTypes);
    builder = addCookies(builder);//from  w w w.j a  va 2  s.com

    ClientResponse response = getResource(path, new HashMap<String, String>()).post(ClientResponse.class,
            postObjJson);
    log.debug("status=" + response.getStatus());
    String receivedType = response.getHeaders().getFirst("Content-Type");
    if (receivedType == null) {
        log.error("Null Content-Type returned from the server");
        return null;
    } else if (receivedType.equalsIgnoreCase("application/json")) {
        log.error("Failed to download file with error response " + response.getEntity(String.class));
        return null;
    } else {
        String contentDisposition = response.getHeaders().getFirst("Content-Disposition");

        String fileName = null;
        if ((contentDisposition != null) && (contentDisposition.startsWith("attachment"))) {
            String[] split1 = contentDisposition.split(";");
            String[] split2 = split1[1].split("=");
            fileName = split2[1].trim();
            if (fileName.startsWith("\"")) {
                fileName = fileName.substring(1, fileName.length() - 1);
            }
        } else {
            fileName = UUID.randomUUID().toString();
        }
        File fileToSave = new File(FilenameUtils.concat(downloadDir.getPath(), fileName));
        InputStream inputStream = response.getEntityInputStream();

        try {
            FileUtils.copyInputStreamToFile(inputStream, fileToSave);
            return fileToSave;
        } catch (IOException e) {
            log.error(StringHelper.stackTraceToString(e));
            return null;
        }
    }
}

---

From source file:net.bpelunit.framework.control.deploy.ode.ODEDeployer.java

private String getArchiveLocation(String pathToTest) {
    String pathToArchive = FilenameUtils.concat(pathToTest, FilenameUtils.getFullPath(fArchive));
    String archiveName = FilenameUtils.getName(fArchive);
    return FilenameUtils.concat(pathToArchive, archiveName);
}

---

From source file:com.abiquo.am.services.TemplateConventions.java

/**
 * Create a path in the Enterprise Repository based on the OVF location. Codify the hostname and
 * the path to the root folder. ej (wwww.abiquo.com/ovfindex/package1/envelope.ovf ->
 * enterpriseRepo/www.abiquo.com/ovfindex/package1 )
 * /*from  ww w. ja v a 2s .  c o  m*/
 * @return the path where the OVF will be deployed into the current enterprise repository.
 */
public static String getTemplatePath(final String enterpriseRepositoryPath, final String ovfid) {
    return FilenameUtils.concat(enterpriseRepositoryPath, getRelativePackagePath(ovfid));
}

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