Example usage for org.apache.commons.io FilenameUtils concat

Introduction

In this page you can find the example usage for org.apache.commons.io FilenameUtils concat.

Prototype

public static String concat(String basePath, String fullFilenameToAdd) 

Source Link

Document

Concatenates a filename to a base path using normal command line style rules.

Usage

From source file:edu.cornell.med.icb.goby.alignments.TestMerge.java

@Test
public void testMergeWithTargetIds2() throws IOException {
    final Merge merger = new Merge(30);

    final List<File> inputFiles = new ArrayList<File>();
    inputFiles.add(new File(FilenameUtils.concat(BASE_TEST_DIR, "align-105")));
    inputFiles.add(new File(FilenameUtils.concat(BASE_TEST_DIR, "align-106")));

    final String outputFile = FilenameUtils.concat(BASE_TEST_DIR, "out-106-merged");
    merger.setK(1);/*from ww  w  . ja  v a 2  s  . c o m*/
    merger.merge(inputFiles, outputFile);

    // With k=1 and twice the same input file, the merge should keep zero entries

    final int count = countAlignmentEntries(outputFile);

    assertEquals(0, count);

}

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From source file:es.urjc.mctwp.image.impl.analyze.AnalyzeImagePlugin.java

private File convert(Image image, String format) throws ImageException {
    String options = null;//from  w w  w.  j av  a 2s.  c  o  m
    File result = null;
    File source = null;

    try {

        if (image instanceof SingleAnalyzeImageImpl) {
            source = ((SingleAnalyzeImageImpl) image).getContent();
            options = "-c " + format + " -e 1";
        } else if (image instanceof ComplexAnalyzeImageImpl) {
            source = ((ComplexAnalyzeImageImpl) image).getHeader();
            options = "-c " + format + " -e 1 -fv";
        }

        String base = source.getParent();
        String pre = ImageUtils.getFileName(source);
        String exten = (DCM_FORMAT_OPT.equalsIgnoreCase(format)) ? ".dcm" : ".png";
        result = new File(FilenameUtils.concat(base, pre + exten));

        // Check if thumbnails exists. Like a cache of thumbnails
        if ((!result.exists()) || (!result.isFile()) || (result.length() == 0)) {

            // Delete a possible erroneous thumbnail file
            if (result.exists())
                result.delete();

            // Execute transformation and scale
            String cmd = medconPath + " " + options + " -f " + source.getAbsolutePath() + " -o "
                    + result.getAbsolutePath();

            exec(cmd, true);
            if (PNG_FORMAT_OPT.equals(format))
                scaleThumbnail(result);
        }
    } catch (Exception e) {
        if (result.exists())
            result.delete();
        logger.error(e.getMessage());
        throw new ImageException(e);
    }

    return result;
}

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From source file:com.mbrlabs.mundus.editor.core.kryo.KryoManager.java

/**
 * Loads a scene.//from  w w  w .  j  a v  a  2  s  .c  o m
 *
 * Does however not initialize ModelInstances, Terrains, ... ->
 * ProjectManager
 *
 * @param context
 *            project context of the scene
 * @param sceneName
 *            name of the scene to load
 * @return loaded scene
 * @throws FileNotFoundException
 */
public SceneDescriptor loadScene(ProjectContext context, String sceneName) throws FileNotFoundException {
    String sceneDir = FilenameUtils.concat(context.path + "/" + ProjectManager.PROJECT_SCENES_DIR,
            sceneName + "." + ProjectManager.PROJECT_SCENE_EXTENSION);

    Input input = new Input(new FileInputStream(sceneDir));
    SceneDescriptor sceneDescriptor = kryo.readObjectOrNull(input, SceneDescriptor.class);
    return sceneDescriptor;
}

---

From source file:com.mbrlabs.mundus.core.project.ProjectManager.java

/**
 * Loads the project context for a project.
 *
 * This does not open to that project, it only loads it.
 *
 * @param ref                       project reference to the project
 * @return                          loaded project context
 * @throws FileNotFoundException    if project can't be found
 *//*from   w  ww .j  a  v a2 s.  c o m*/
public ProjectContext loadProject(ProjectRef ref) throws FileNotFoundException {
    ProjectContext context = kryoManager.loadProjectContext(ref);
    context.path = ref.getPath();

    // load textures
    for (MTexture tex : context.textures) {
        tex.texture = TextureUtils
                .loadMipmapTexture(Gdx.files.absolute(FilenameUtils.concat(context.path, tex.getPath())), true);
        Log.debug("Loaded texture: " + tex.getPath());
    }

    // load g3db models
    G3dModelLoader loader = new G3dModelLoader(new UBJsonReader());
    for (MModel model : context.models) {
        model.setModel(
                loader.loadModel(Gdx.files.absolute(FilenameUtils.concat(context.path, model.g3dbPath))));
    }

    // load terrain .terra files
    for (Terrain terrain : context.terrains) {
        TerrainIO.importTerrain(context, terrain);
    }

    context.currScene = loadScene(context, context.activeSceneName);

    return context;
}

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From source file:edu.kit.dama.rest.util.RestClientUtils.java

/**
 * Deserializes an entity from a stream provided by a ClientResponse.
 * <b>Attention:</b>May throw a DeserializationException if the
 * deserialization fails for some reason. In some cases, pEntityClass might
 * be 'null', e.g. if no deserializable output is expected. In this cases it
 * is possible, to obtain the response object by setting the return type C
 * to ClientResponse. If this is the case and pEntityClass is null,
 * pResponse will be returned./*from w w  w  .  ja  v a  2 s .  c o m*/
 *
 * @param <C> entity class of ClientResponse if pResponse should be
 * returned.
 * @param pEntityClass The class of the entity to deserialize or null if no
 * deserializable result is expected.
 * @param pResponse The response which provides the entity input stream and
 * the HTTP result.
 *
 * @return The deserialized object or pResponse.
 */
public static <C> C createObjectFromStream(final Class<C> pEntityClass, final ClientResponse pResponse) {
    C returnValue = null;
    if (pResponse == null) {
        throw new WebServiceException(
                "Failed to create object from stream. No response availabe! (response == null)");
    }
    if (pResponse.getStatus() != 200) {
        //error ... do not try to deserialize the result.
        try {
            String data = new String(IOUtils.toByteArray(pResponse.getEntityInputStream()));
            String tmp = FileUtils.getTempDirectoryPath();
            String extension = ".html";
            if (!data.contains("<html>")) {
                extension = ".log";
            }
            String outputFile = FilenameUtils.concat(tmp,
                    "kitdm_rest_" + System.currentTimeMillis() + extension);

            try (FileOutputStream fout = new FileOutputStream(outputFile)) {
                fout.write(data.getBytes());
                fout.flush();
            }

            throw new WebServiceException("Failed to create object from stream. Service call returned status "
                    + pResponse.getStatus() + ". More information available at: " + outputFile);
        } catch (IOException ex) {
            throw new WebServiceException("Failed to create object from stream. Service call returned status "
                    + pResponse.getStatus() + ". Cause: See server log.");
        }
    } else if (pEntityClass != null) {
        return pResponse.getEntity(pEntityClass);
        /* try {
        Unmarshaller unmarshaller = org.eclipse.persistence.jaxb.JAXBContext.newInstance(pEntityClass).createUnmarshaller();
        returnValue = (C) unmarshaller.unmarshal(getInputStream(pResponse.getEntityInputStream()));
        if (LOGGER.isDebugEnabled()) {
            Marshaller marshaller = org.eclipse.persistence.jaxb.JAXBContext.newInstance(pEntityClass).createMarshaller();
            marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
            StringWriter sw = new StringWriter();
            marshaller.marshal(returnValue, sw);
            LOGGER.debug("createObjectFromStream: " + sw.toString());
        }
        } catch (JAXBException ex) {
        throw new DeserializationException("Failed to deserialize object of type " + pEntityClass + " from response " + pResponse, ex);
        }*/
    } else {
        try {
            //check if the ClientResponse is expected as result...
            returnValue = (C) pResponse;
        } catch (ClassCastException e) {
            LOGGER.debug("No response expected!");
            returnValue = null;
        }
    }
    return returnValue;
}

---

From source file:edu.cornell.med.icb.goby.alignments.TestReadWriteAlignments.java

@Test
public void readWriteHeader104() throws IOException {
    final IndexedIdentifier queryIds = new IndexedIdentifier();
    // NOTE: there is no id for entry 0, this is ok
    queryIds.put(new MutableString("query:1"), 1);
    queryIds.put(new MutableString("query:2"), 2);

    final IndexedIdentifier targetIds = new IndexedIdentifier();
    targetIds.put(new MutableString("target:0"), 0);
    targetIds.put(new MutableString("target:1"), 1);

    final AlignmentWriter writer = new AlignmentWriterImpl(FilenameUtils.concat(BASE_TEST_DIR, "align-104"));

    assertNotNull("Query ids should not be null", queryIds.keySet());
    writer.setQueryIdentifiers(queryIds);

    assertNotNull("Target ids should not be null", targetIds.keySet());
    writer.setTargetIdentifiers(targetIds);
    final int[] targetLengths = { 42, 42 };
    writer.setTargetLengths(targetLengths);
    writer.close();/*from www .jav a  2s. c om*/

    final AlignmentReaderImpl reader = new AlignmentReaderImpl(
            FilenameUtils.concat(BASE_TEST_DIR, "align-104"));
    reader.readHeader();

    assertEquals("Number of queries do not match", 2, reader.getNumberOfQueries());

}

---

From source file:net.sf.jvifm.ui.ZipLister.java

private File extractToTemp(FileObject fileObject) {
    String basename = fileObject.getName().getBaseName();
    File tempFile = null;//from  w w w.j  av  a  2 s. co m
    try {
        String tmpPath = System.getProperty("java.io.tmpdir");
        tempFile = new File(FilenameUtils.concat(tmpPath, basename));

        byte[] buf = new byte[4096];
        BufferedInputStream bin = new BufferedInputStream(fileObject.getContent().getInputStream());
        BufferedOutputStream bout = new BufferedOutputStream(new FileOutputStream(tempFile));
        while (bin.read(buf, 0, 1) != -1) {
            bout.write(buf, 0, 1);
        }
        bout.close();
        bin.close(); // by barney
    } catch (Throwable e) {
        e.printStackTrace();
    }
    return tempFile;
}

---

From source file:io.hawkcd.agent.services.FileManagementService.java

@Override
public String pathCombine(String... args) {
    String output = "";
    for (String arg : args) {
        arg = this.normalizePath(arg);
        output = FilenameUtils.concat(output, arg);
    }/*from  ww  w .j a v a  2 s .co m*/
    FilenameUtils.normalizeNoEndSeparator(output);

    return output;
}

---

From source file:edu.udo.scaffoldhunter.model.clustering.evaluation.FileSaverMetaModule.java

private String getUniqueBaseName(EvaluationResult result) {
    count++;/*from   ww w  .j a va  2s.  c  o m*/
    return FilenameUtils.concat(FilenameUtils.getFullPathNoEndSeparator(path), FilenameUtils.getBaseName(path))
            + "-" + result.getMeasurement() + "_" + Integer.toString(count - 1);
}

---

From source file:ddf.catalog.resource.download.ReliableResourceDownloader.java

public ResourceResponse setupDownload(Metacard metacard, DownloadStatusInfo downloadStatusInfo) {
    Resource resource = resourceResponse.getResource();
    MimeType mimeType = resource.getMimeType();
    String resourceName = resource.getName();

    fbos = new FileBackedOutputStream(DEFAULT_FILE_BACKED_OUTPUT_STREAM_THRESHOLD);
    countingFbos = new CountingOutputStream(fbos);
    streamReadByClient = new ReliableResourceInputStream(fbos, countingFbos, downloadState, downloadIdentifier,
            resourceResponse);// w w  w .ja v a  2s . co m

    this.metacard = metacard;

    // Create new ResourceResponse to return that will encapsulate the
    // ReliableResourceInputStream that will be read by the client simultaneously as the product
    // is cached to disk (if caching is enabled)
    ResourceImpl newResource = new ResourceImpl(streamReadByClient, mimeType, resourceName);
    resourceResponse = new ResourceResponseImpl(resourceResponse.getRequest(), resourceResponse.getProperties(),
            newResource);

    // Get handle to retrieved product's InputStream
    resourceInputStream = resource.getInputStream();

    eventListener.setDownloadMap(downloadIdentifier, resourceResponse);
    downloadStatusInfo.addDownloadInfo(downloadIdentifier, this, resourceResponse);

    if (downloaderConfig.isCacheEnabled()) {

        CacheKey keyMaker = null;
        String key = null;
        try {
            keyMaker = new CacheKey(metacard, resourceResponse.getRequest());
            key = keyMaker.generateKey();
        } catch (IllegalArgumentException e) {
            LOGGER.info("Cannot create cache key for resource with metacard ID = {}", metacard.getId());
            return resourceResponse;
        }

        if (!resourceCache.isPending(key)) {

            // Fully qualified path to cache file that will be written to.
            // Example:
            // <INSTALL-DIR>/data/product-cache/<source-id>-<metacard-id>
            // <INSTALL-DIR>/data/product-cache/ddf.distribution-abc123
            filePath = FilenameUtils.concat(resourceCache.getProductCacheDirectory(), key);
            reliableResource = new ReliableResource(key, filePath, mimeType, resourceName, metacard);
            resourceCache.addPendingCacheEntry(reliableResource);

            try {
                fos = FileUtils.openOutputStream(new File(filePath));
                doCaching = true;
                this.downloadState.setCacheEnabled(true);
            } catch (IOException e) {
                LOGGER.info("Unable to open cache file {} - no caching will be done.", filePath);
            }
        } else {
            LOGGER.debug("Cache key {} is already pending caching", key);
        }
    }

    return resourceResponse;
}

---

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