Example usage for org.apache.commons.io FilenameUtils concat

List of usage examples for org.apache.commons.io FilenameUtils concat

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  6. concat

Introduction

In this page you can find the example usage for org.apache.commons.io FilenameUtils concat.

Prototype

public static String concat(String basePath, String fullFilenameToAdd)

Source Link

Document

Concatenates a filename to a base path using normal command line style rules.

Usage

From source file:jenkins.plugins.coverity.CoverityLauncher.java

/**
 * Sets the value of environment variable "COV_IDIR" and creates necessary directories. This variable is used as argument of "--dir" for
 * cov-build./*from  w w  w.jav a  2s . c  o  m*/
 *
 * If the environment variable has already being set then that value is used. Otherwise, the value of
 * this variable is set to either a temporary directory or the idir specified on the UI under the
 * Intermediate Directory option.
 *
 * Notice this variable must be resolved before running cov-build. Also this method creates necessary directories.
 */
public void setupIntermediateDirectory(@Nonnull AbstractBuild<?, ?> build, @Nonnull TaskListener listener,
        @Nonnull Node node) {
    Validate.notNull(build, AbstractBuild.class.getName() + " object can't be null");
    Validate.notNull(listener, TaskListener.class.getName() + " object can't be null");
    Validate.notNull(node, Node.class.getName() + " object can't be null");
    Validate.notNull(envVars, EnvVars.class.getName() + " object can't be null");
    if (!envVars.containsKey("COV_IDIR")) {
        FilePath temp;
        InvocationAssistance invocationAssistance = CoverityUtils.getInvocationAssistance(build);
        try {
            if (invocationAssistance == null || invocationAssistance.getIntermediateDir() == null
                    || invocationAssistance.getIntermediateDir().isEmpty()) {
                FilePath coverityDir = node.getRootPath().child("coverity");
                coverityDir.mkdirs();
                temp = coverityDir.createTempDir("temp-", null);
            } else {
                // Gets a not null nor empty intermediate directory.
                temp = resolveIntermediateDirectory(build, listener, node,
                        invocationAssistance.getIntermediateDir());
                if (temp != null) {
                    File idir = new File(temp.getRemote());
                    String workspace = envVars.get("WORKSPACE");
                    if (idir != null && !idir.isAbsolute() && !StringUtils.isEmpty(workspace)) {
                        String path = FilenameUtils.concat(workspace, temp.getRemote());
                        if (!StringUtils.isEmpty(path)) {
                            temp = new FilePath(temp.getChannel(), path);
                        }
                    }
                    temp.mkdirs();
                }
            }

            if (invocationAssistance != null) {
                build.addAction(new CoverityTempDir(temp, invocationAssistance.getIntermediateDir() == null));
            } else {
                build.addAction(new CoverityTempDir(temp, true));
            }
        } catch (IOException e) {
            throw new RuntimeException("Error while creating temporary directory for Coverity", e);
        } catch (InterruptedException e) {
            throw new RuntimeException("Interrupted while creating temporary directory for Coverity");
        }
        if (temp != null) {
            envVars.put("COV_IDIR", temp.getRemote());
        }
    }
}

From source file:net.sf.jvifm.ui.shell.QuickRunShell.java

public boolean doCommand() {
    String cmd = null;/*from w  w  w .  java2  s  . c om*/
    String[] args = new String[] {};
    /*
    if (completeOptions != null && completeOptions.length > 0) {
       cmd = getCompletionText();
    } else {
    */

    cmd = txtCommand.getText();
    int argsRealBegin = cmd.indexOf(" ", argsBeginIndex);
    if (argsRealBegin > 0) { // arg
        String arg = cmd.substring(argsRealBegin + 1);
        cmd = cmd.substring(0, argsRealBegin).trim();
        args = arg.split("\\s+");
    }

    ShortcutsManager scm = ShortcutsManager.getInstance();
    if (scm.isShortCut(cmd)) {
        Shortcut cc = scm.findByName(cmd);
        Command command = new SystemCommand(cc.getText(), args, true);
        command.setPwd(Main.fileManager.getActivePanel().getPwd());
        commandRunner.run(command);
        return true;
    }

    String newPath = FilenameUtils.concat(pwd, cmd);
    newPath = FilenameUtils.normalizeNoEndSeparator(newPath);

    File file = null;
    try {
        file = new File(newPath);
    } catch (Exception e) {
        return false;
    }
    if (file != null && file.exists()) {
        if (file.isFile()) {
            // Util.openFileWithDefaultApp(newPath);
            Command command = new SystemCommand(newPath, args, true);
            command.setPwd(Main.fileManager.getActivePanel().getPwd());
            commandRunner.run(command);
            return true;
        }

        FileManager fileManager = Main.fileManager;
        FileLister activeLister = fileManager.getActivePanel();
        fileManager.activeGUI();
        activeLister.visit(newPath);
        return true;
    }
    String abPath = findExecuteInSysPath(cmd);
    if (abPath != null) {
        Command command = new SystemCommand(abPath, args, false, true);
        command.setPwd(Main.fileManager.getActivePanel().getPwd());
        commandRunner.run(command);
        return true;
    }
    return false;
}

From source file:es.urjc.mctwp.pacs.impl.DcmStorageServerImpl.java

/**
 * Callback that stores DICOM received file into FS
 *///w  w w . j av  a 2  s  . com
protected void doCStore(Association as, int pcid, DicomObject rq, PDVInputStream dataStream, String tsuid,
        DicomObject rsp) throws IOException, DicomServiceException {

    //Is modality allowed?
    Command cmd = getCommand(ModalityAllowed.class);
    ((ModalityAllowed) cmd).setModality(as.getCallingAET());
    cmd = runCommand(cmd);

    if (((ModalityAllowed) cmd).getResult())
        try {
            //Get Dicom object
            String cuid = rq.getString(Tag.AffectedSOPClassUID);
            String iuid = rq.getString(Tag.AffectedSOPInstanceUID);
            BasicDicomObject fmi = new BasicDicomObject();
            fmi.initFileMetaInformation(cuid, iuid, tsuid);

            //Store temporary dicom file
            String filename = iuid + ".dcm";
            File file = new File(FilenameUtils.concat(tempDirectory.getAbsolutePath(), filename));
            FileOutputStream fos = new FileOutputStream(file);
            BufferedOutputStream bos = new BufferedOutputStream(fos, bufferSize);
            DicomOutputStream dos = new DicomOutputStream(bos);
            dos.writeFileMetaInformation(fmi);
            dataStream.copyTo(dos);
            dos.close();

            //Store into persistent space
            ArrayList<File> files = new ArrayList<File>();
            files.add(file);
            imc.storeTemporalImages(as.getCallingAET(), files);
            file.delete();
        } catch (Exception e) {
            throw new DicomServiceException(rq, Status.ProcessingFailure, e.getMessage());
        }

    //Wait if there is delay configured
    if (rspDelay > 0)
        try {
            Thread.sleep(rspDelay);
        } catch (InterruptedException e) {
        }
}

From source file:com.enioka.jqm.tools.ClientApiTest.java

/**
 * Temp dir should be removed after run/*w w  w . ja  va  2 s .c o m*/
 */
@Test
public void testTempDir() throws Exception {
    int i = JqmSimpleTest.create(em, "pyl.EngineApiTmpDir").run(this);

    File tmpDir = new File(FilenameUtils.concat(TestHelpers.node.getTmpDirectory(), "" + i));
    Assert.assertFalse(tmpDir.isDirectory());
}

From source file:com.enderville.enderinstaller.util.InstallScript.java

/**
 * If the install fails, restore everything that we backed up.
 *
 * @throws IOException/*from  w w  w . ja v  a  2 s  .com*/
 */
private static void restoreBackup() throws IOException {
    //TODO what other folders to restore?
    FileUtils.copyFile(new File(InstallerConfig.getMinecraftJar() + ".backup"),
            new File(InstallerConfig.getMinecraftJar()));
    File mods = new File(InstallerConfig.getMinecraftModsFolder());
    File modsBackup = new File(InstallerConfig.getMinecraftModsFolder() + "_backup");
    if (modsBackup.exists()) {
        FileUtils.deleteDirectory(mods);
        FileUtils.copyDirectory(modsBackup, mods);
    }
    for (String name : otherThingsToBackup) {
        String fname = FilenameUtils
                .normalize(FilenameUtils.concat(InstallerConfig.getMinecraftFolder(), name));
        String fnameBackup = fname + "_backup";
        File f = new File(fname);
        File backup = new File(fnameBackup);
        if (backup.exists()) {
            FileUtils.copyDirectory(backup, f);
        }
    }
}

From source file:edu.cornell.med.icb.goby.modes.TestSplicedSamHelper.java

public void testSamToCompactTrickCase3() throws IOException {

    SAMToCompactMode importer = new SAMToCompactMode();
    importer.setInputFile("test-data/splicedsamhelper/tricky-spliced-3.sam");
    final String outputFilename = FilenameUtils.concat(BASE_TEST_DIR, "spliced-output-alignment-3");
    importer.setOutputFile(outputFilename);
    importer.execute();/*from   www.  j av  a 2  s . c  o  m*/

    AlignmentReader reader = new AlignmentReaderImpl(outputFilename);
    assertTrue(reader.hasNext());
    Alignments.AlignmentEntry first = reader.next();

    assertEquals(0, first.getQueryIndex());
    assertEquals(0, first.getFragmentIndex());
    assertEquals(170769 - 1, first.getPosition());
    assertTrue(first.hasPairAlignmentLink());
    assertFalse(first.hasSplicedForwardAlignmentLink());
    Assert.assertEquals(1, first.getPairAlignmentLink().getFragmentIndex());
    Assert.assertEquals(216048 - 1, first.getPairAlignmentLink().getPosition());
    assertFalse(first.hasSplicedBackwardAlignmentLink());

    Alignments.AlignmentEntry second = reader.next();
    assertEquals(0, second.getQueryIndex());
    assertEquals(1, second.getFragmentIndex());
    assertTrue(second.hasPairAlignmentLink());

    Assert.assertEquals(0, second.getPairAlignmentLink().getFragmentIndex());
    assertTrue("second must have spliced forward link", second.hasSplicedForwardAlignmentLink());
    assertFalse("second must have spliced backward link", second.hasSplicedBackwardAlignmentLink());

}

From source file:es.urjc.mctwp.image.impl.dicom.DicomImagePlugin.java

/**
 * Obtains a png file from a singleImage
 * //  w ww .j  av  a2s.  co m
 * @param single
 * @return
 * @throws ImageException
 */
private File toPng(SingleImageDicomImpl single) throws ImageException {
    File result = null;
    File source = null;

    try {

        // Prepare output file
        source = single.getContent();
        String base = source.getParent();
        String pre = ImageUtils.getFileName(source);
        result = new File(FilenameUtils.concat(base, pre + ".png"));

        // Check if thumbnails exists. Like a cache of thumbnails
        if ((!result.exists()) || (!result.isFile()) || (result.length() == 0)) {

            // Delete a possible erroneus thumbanil file
            if (result.exists())
                result.delete();

            // Execute transformation and scale
            String cmd = medconPath + " " + options + " -f " + source.getAbsolutePath() + " -o "
                    + result.getAbsolutePath();

            exec(cmd, true);
            scaleThumbnail(result);
        }
    } catch (Exception e) {
        if (result.exists())
            result.delete();
        logger.error(e.getMessage());
        throw new ImageException(e);
    }

    return result;
}

From source file:com.mosso.client.cloudfiles.sample.FilesCopy.java

/**
 *
 * @param folder//from w  ww.jav a 2  s  . c om
 * @return null if the input is not a folder otherwise a zip file containing all the files in the folder with nested folders skipped.
 * @throws IOException
 */
public static File zipFolder(File folder) throws IOException {
    byte[] buf = new byte[1024];
    int len;

    // Create the ZIP file
    String filenameWithZipExt = folder.getName() + ZIPEXTENSION;
    File zippedFile = new File(FilenameUtils.concat(SYSTEM_TMP.getAbsolutePath(), filenameWithZipExt));

    ZipOutputStream out = new ZipOutputStream(new FileOutputStream(zippedFile));

    if (folder.isDirectory()) {
        File[] files = folder.listFiles();

        for (File f : files) {
            if (!f.isDirectory()) {
                FileInputStream in = new FileInputStream(f);

                // Add ZIP entry to output stream.
                out.putNextEntry(new ZipEntry(f.getName()));

                // Transfer bytes from the file to the ZIP file
                while ((len = in.read(buf)) > 0) {
                    out.write(buf, 0, len);
                }

                // Complete the entry
                out.closeEntry();
                in.close();
            } else
                logger.warn("Skipping nested folder: " + f.getAbsoluteFile());
        }

        out.flush();
        out.close();
    } else {
        logger.warn("The folder name supplied is not a folder!");
        System.err.println("The folder name supplied is not a folder!");
        return null;
    }

    return zippedFile;
}

From source file:com.expedia.tesla.compiler.Compiler.java

private String getOutputPath(String fullName) throws IOException {
    int idx = fullName.lastIndexOf('.');
    String shortName = idx == -1 ? fullName : fullName.substring(idx + 1);
    String fileName = shortName;/*from ww w .  j a  va  2 s .  co  m*/
    switch (this.language) {
    case LANG_JAVA:
        fileName = fullName.replace('.', File.separatorChar) + ".java";
        break;
    case LANG_CSHARP:
        fileName += ".cs";
        break;
    case LANG_CPP:
        fileName += ".h";
        break;
    default:
        fileName += '.' + this.language;
        break;
    }
    File file = new File(FilenameUtils.concat(this.outputDir.getAbsolutePath(), fileName));
    Util.forceMkdirParent(file);
    return file.getAbsolutePath();
}

From source file:com.enioka.jqm.tools.JobManagerHandler.java

private Integer addDeliverable(String path, String fileLabel) throws IOException {
    Deliverable d = null;//from  w  w  w  . j a  v  a  2s.  c om
    EntityManager em = Helpers.getNewEm();
    try {
        this.ji = em.find(JobInstance.class, ji.getId());

        String outputRoot = this.ji.getNode().getDlRepo();
        String ext = FilenameUtils.getExtension(path);
        String relDestPath = "" + ji.getJd().getApplicationName() + "/" + ji.getId() + "/" + UUID.randomUUID()
                + "." + ext;
        String absDestPath = FilenameUtils.concat(outputRoot, relDestPath);
        String fileName = FilenameUtils.getName(path);
        FileUtils.moveFile(new File(path), new File(absDestPath));
        jqmlogger.debug("A deliverable is added. Stored as " + absDestPath + ". Initial name: " + fileName);

        em.getTransaction().begin();
        d = Helpers.createDeliverable(relDestPath, fileName, fileLabel, this.ji.getId(), em);
        em.getTransaction().commit();
    } finally {
        em.close();
    }
    return d.getId();
}