Example usage for org.apache.wicket.ajax AjaxRequestTarget add

List of usage examples for org.apache.wicket.ajax AjaxRequestTarget add

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Introduction

In this page you can find the example usage for org.apache.wicket.ajax AjaxRequestTarget add.

Prototype

void add(Component... components);

Source Link

Document

Adds components to the list of components to be rendered.

Usage

From source file:au.org.theark.lims.web.component.subjectlims.lims.biospecimen.form.BiospecimenModalDetailForm.java

License:Open Source License

public void initialiseDetailForm() {
    idTxtFld = new TextField<String>("biospecimen.id");
    biospecimenUidTxtFld = new TextField<String>("biospecimen.biospecimenUid");
    biospecimenUidTxtFld.add(new AjaxFormComponentUpdatingBehavior("onchange") {
        private static final long serialVersionUID = 1L;

        @Override/*from   w  w w  .  ja  va2 s  . c o  m*/
        protected void onUpdate(AjaxRequestTarget target) {
            // Check BiospecimenUID is unique
            String biospecimenUid = (getComponent().getDefaultModelObject().toString() != null
                    ? getComponent().getDefaultModelObject().toString()
                    : new String());
            Biospecimen biospecimen = iLimsService.getBiospecimenByUid(biospecimenUid,
                    cpModel.getObject().getBiospecimen().getStudy());
            if (biospecimen != null && biospecimen.getId() != null) {
                error("Biospecimen UID must be unique. Please try again.");
                target.focusComponent(getComponent());
            }
            target.add(feedbackPanel);
        }
    });

    parentUidTxtFld = new TextField<String>("biospecimen.parentUid");
    commentsTxtAreaFld = new TextArea<String>("biospecimen.comments");
    sampleDateTxtFld = new DateTextField("biospecimen.sampleDate", au.org.theark.core.Constants.DD_MM_YYYY);
    useCollectionDate = new AjaxLink<Date>("useCollectionDate") {
        private static final long serialVersionUID = 1L;

        @Override
        public void onClick(AjaxRequestTarget target) {

            BioCollection selectedBioCollection = cpModel.getObject().getBioCollection();
            cpModel.getObject().getBiospecimen().setSampleDate(selectedBioCollection.getCollectionDate());
            target.add(sampleDateTxtFld);
        }
    };

    sampleTimeTxtFld = new TimeField("biospecimen.sampleTime") {

        private static final long serialVersionUID = 1L;

        @Override
        protected void onBeforeRender() {
            this.getDateTextField().setVisibilityAllowed(false);
            super.onBeforeRender();
        }

        @Override
        protected void convertInput() {
            // Slight change to not default to today's date
            Date modelObject = (Date) getDefaultModelObject();
            getDateTextField().setConvertedInput(modelObject != null ? modelObject : null);
            super.convertInput();
        }
    };

    processedDateTxtFld = new DateTextField("biospecimen.processedDate",
            au.org.theark.core.Constants.DD_MM_YYYY);
    processedTimeTxtFld = new TimeField("biospecimen.processedTime") {

        private static final long serialVersionUID = 1L;

        @Override
        protected void onBeforeRender() {
            this.getDateTextField().setVisibilityAllowed(false);
            super.onBeforeRender();
        }

        @Override
        protected void convertInput() {
            // Slight change to not default to today's date
            Date modelObject = (Date) getDefaultModelObject();
            getDateTextField().setConvertedInput(modelObject != null ? modelObject : null);
            super.convertInput();
        }
    };

    ArkDatePicker sampleDatePicker = new ArkDatePicker();
    sampleDatePicker.bind(sampleDateTxtFld);
    sampleDateTxtFld.add(sampleDatePicker);

    ArkDatePicker processedDatePicker = new ArkDatePicker();
    processedDatePicker.bind(processedDateTxtFld);
    processedDateTxtFld.add(processedDatePicker);

    quantityTxtFld = new TextField<Double>("biospecimen.quantity") {

        private static final long serialVersionUID = 1L;

        @SuppressWarnings("unchecked")
        @Override
        public <C> IConverter<C> getConverter(Class<C> type) {
            DoubleConverter doubleConverter = new DoubleConverter();
            NumberFormat numberFormat = NumberFormat.getInstance();
            numberFormat.setMinimumFractionDigits(1);
            numberFormat.setMaximumFractionDigits(10);
            doubleConverter.setNumberFormat(getLocale(), numberFormat);
            return (IConverter<C>) doubleConverter;
        }
    };
    parentQuantityTxtFld = new TextField<Double>("parentBiospecimen.quantity") {
        private static final long serialVersionUID = 1L;

        @SuppressWarnings("unchecked")
        @Override
        public <C> IConverter<C> getConverter(Class<C> type) {
            DoubleConverter doubleConverter = new DoubleConverter();
            NumberFormat numberFormat = NumberFormat.getInstance();
            numberFormat.setMinimumFractionDigits(1);
            numberFormat.setMaximumFractionDigits(10);
            doubleConverter.setNumberFormat(getLocale(), numberFormat);
            return (IConverter<C>) doubleConverter;
        }
    };
    parentQuantityTxtFld.setVisible(cpModel.getObject().getBiospecimenProcessing()
            .equalsIgnoreCase(au.org.theark.lims.web.Constants.BIOSPECIMEN_PROCESSING_PROCESSING));
    parentQuantityTxtFld.setOutputMarkupId(true);

    quantityTxtFld.setEnabled(false);
    bioTransactionQuantityTxtFld = new TextField<Double>("bioTransaction.quantity") {

        private static final long serialVersionUID = 1L;

        @SuppressWarnings("unchecked")
        @Override
        public <C> IConverter<C> getConverter(Class<C> type) {
            DoubleConverter doubleConverter = new DoubleConverter();
            NumberFormat numberFormat = NumberFormat.getInstance();
            numberFormat.setMinimumFractionDigits(1);
            numberFormat.setMaximumFractionDigits(10);
            doubleConverter.setNumberFormat(getLocale(), numberFormat);
            return (IConverter<C>) doubleConverter;
        }
    };
    bioTransactionQuantityTxtFld.add(new AjaxFormComponentUpdatingBehavior("onchange") {
        private static final long serialVersionUID = 1L;

        @Override
        protected void onUpdate(AjaxRequestTarget target) {
            target.add(amountLbl);
        }
    });

    concentrationTxtFld = new TextField<Number>("biospecimen.concentration");
    concentrationTxtFld.add(new AjaxFormComponentUpdatingBehavior("onchange") {
        private static final long serialVersionUID = 1L;

        @Override
        protected void onUpdate(AjaxRequestTarget target) {
            target.add(amountLbl);
        }
    });
    amountLbl = new Label("biospecimen.amount", new Model<Number>() {
        private static final long serialVersionUID = 1L;

        @Override
        public Number getObject() {
            Number concentration = ((concentrationTxtFld.getModelObject() == null) ? 0
                    : concentrationTxtFld.getModelObject());
            Number quantity = null;
            if (bioTransactionQuantityTxtFld.isVisible()) {
                quantity = ((bioTransactionQuantityTxtFld.getModelObject() == null) ? 0
                        : bioTransactionQuantityTxtFld.getModelObject());
            } else {
                quantity = ((quantityTxtFld.getModelObject() == null) ? 0 : quantityTxtFld.getModelObject());
            }
            Number amount = (concentration.doubleValue() * quantity.doubleValue());
            return amount;
        }
    });
    amountLbl.setOutputMarkupPlaceholderTag(true);

    setQuantityLabel();
    initSampleTypeDdc();
    initBioCollectionDdc();
    initUnitDdc();
    initTreatmentTypeDdc();
    initGradeDdc();
    initStoredInDdc();
    initAnticoagDdc();
    initStatusDdc();
    initQualityDdc();
    initBiospecimenProtocol();
    purity = new TextField<Number>("biospecimen.purity");

    barcodedChkBox = new CheckBox("biospecimen.barcoded");
    barcodedChkBox.setVisible(true);
    barcodedChkBox.setEnabled(false);

    initialiseBarcodeImage();

    initialiseBiospecimenCFDataEntry();
    initialiseBioTransactionListPanel();
    initialiseBiospecimenLocationPanel();
    initialiseBiospecimenButtonsPanel();
    initDeleteModelWindow();

    attachValidators();
    addComponents();

    // Focus on Sample Type
    sampleTypeDdc.add(new ArkDefaultFormFocusBehavior());
}

From source file:au.org.theark.lims.web.component.subjectlims.lims.biospecimen.form.BiospecimenModalDetailForm.java

License:Open Source License

@Override
protected void onSave(AjaxRequestTarget target) {
    boolean saveOk = true;
    org.apache.shiro.subject.Subject currentUser = SecurityUtils.getSubject();
    try {// ww w.j  a v  a 2 s. co m
        if (cpModel.getObject().getBiospecimen().getId() == null) {
            // Save/Process/Aliquot
            if (cpModel.getObject().getBiospecimenProcessing().isEmpty()) { //empty
                // Normal Save functionality
                // Initial transaction detail
                currentUser = SecurityUtils.getSubject();
                cpModel.getObject().getBioTransaction().setRecorder(currentUser.getPrincipal().toString());
                cpModel.getObject().getBioTransaction().setUnit(cpModel.getObject().getBiospecimen().getUnit()); //TODO: soon in web form

                iLimsService.createBiospecimen(cpModel.getObject());

                // Update location
                if (cpModel.getObject().getBiospecimenLocationVO().getIsAllocated()) {
                    if (cpModel.getObject().getInvCell() != null
                            && cpModel.getObject().getInvCell().getBiospecimen() != null) {
                        iInventoryService.updateInvCell(cpModel.getObject().getInvCell());
                    }
                }
                this.info("Biospecimen " + cpModel.getObject().getBiospecimen().getBiospecimenUid()
                        + " was created successfully");
                setQuantityLabel();
            } else if (cpModel.getObject().getBiospecimenProcessing()
                    .equalsIgnoreCase(au.org.theark.lims.web.Constants.BIOSPECIMEN_PROCESSING_PROCESSING)) {
                // Process the biospecimen
                try {
                    LimsVO limsVo = cpModel.getObject();
                    Biospecimen biospecimen = limsVo.getBiospecimen();
                    Biospecimen parentBiospecimen = iLimsService
                            .getBiospecimen(biospecimen.getParent().getId());
                    double qtyUsedFromParent = limsVo.getParentBiospecimen().getQuantity();

                    if (qtyUsedFromParent > parentBiospecimen.getQuantity()) {
                        StringBuffer errorMessage = new StringBuffer();

                        errorMessage.append("Cannot process more than ");
                        errorMessage.append(parentBiospecimen.getQuantity());
                        errorMessage.append(parentBiospecimen.getUnit().getName());
                        errorMessage.append(" of the parent biospecimen");

                        this.error(errorMessage);
                        saveOk = false;
                    } else {
                        // Process the biospecimen and it's parent
                        iLimsService.createBiospecimen(limsVo);

                        // Add parent transaction
                        LimsVO parentLimsVo = new LimsVO();
                        parentLimsVo.setBiospecimen(parentBiospecimen);
                        parentLimsVo.getBioTransaction().setId(null);
                        parentLimsVo.getBioTransaction().setUnit(biospecimen.getUnit()); //TODO: soon in web form
                        parentLimsVo.getBioTransaction().setBiospecimen(parentBiospecimen);
                        parentLimsVo.getBioTransaction().setTransactionDate(Calendar.getInstance().getTime());
                        parentLimsVo.getBioTransaction()
                                .setReason("Processed for: " + biospecimen.getBiospecimenUid());
                        parentLimsVo.getBioTransaction().setRecorder(currentUser.getPrincipal().toString());

                        // NOTE: Removing from parent is negative-value transaction
                        parentLimsVo.getBioTransaction().setQuantity(qtyUsedFromParent * -1);
                        BioTransactionStatus bioTransactionStatus = iLimsService
                                .getBioTransactionStatusByName("Processed");
                        parentLimsVo.getBioTransaction().setStatus(bioTransactionStatus);
                        iLimsService.createBioTransaction(parentLimsVo);

                        this.info("Biospecimen " + cpModel.getObject().getBiospecimen().getBiospecimenUid()
                                + " was created successfully");
                        setQuantityLabel();
                    }
                } catch (EntityNotFoundException e) {
                    log.error(e.getMessage());
                }
            } else if (cpModel.getObject().getBiospecimenProcessing()
                    .equalsIgnoreCase(au.org.theark.lims.web.Constants.BIOSPECIMEN_PROCESSING_ALIQUOTING)) {
                // Aliquot the biospecimen
                try {
                    LimsVO limsVo = cpModel.getObject();
                    Biospecimen biospecimen = limsVo.getBiospecimen();
                    BioTransaction bioTransaction = limsVo.getBioTransaction();
                    Biospecimen parentBiospecimen = iLimsService
                            .getBiospecimen(biospecimen.getParent().getId());

                    if (bioTransaction.getQuantity() > parentBiospecimen.getQuantity()) {
                        StringBuffer errorMessage = new StringBuffer();

                        errorMessage.append("Cannot aliquot more than ");
                        errorMessage.append(parentBiospecimen.getQuantity());
                        errorMessage.append(parentBiospecimen.getUnit().getName());
                        errorMessage.append(" of the parent biospecimen");

                        this.error(errorMessage);
                        saveOk = false;
                    } else {
                        // Aliquot the biospecimen and it's parent
                        iLimsService.createBiospecimen(limsVo);

                        // Add parent transaction
                        LimsVO parentLimsVo = new LimsVO();
                        //parentLimsVo.setBiospecimen(parentBiospecimen);
                        parentLimsVo.getBioTransaction().setId(null);
                        parentLimsVo.getBioTransaction().setBiospecimen(parentBiospecimen);
                        parentLimsVo.getBioTransaction().setUnit(biospecimen.getUnit()); //TODO: soon in web form
                        parentLimsVo.getBioTransaction().setTransactionDate(Calendar.getInstance().getTime());
                        parentLimsVo.getBioTransaction()
                                .setReason("Sub-Aliquot for: " + biospecimen.getBiospecimenUid());
                        parentLimsVo.getBioTransaction().setRecorder(currentUser.getPrincipal().toString());

                        // NOTE: Removing from parent is negative-value transaction
                        parentLimsVo.getBioTransaction().setQuantity(bioTransaction.getQuantity() * -1);
                        BioTransactionStatus bioTransactionStatus = iLimsService
                                .getBioTransactionStatusByName("Aliquoted");
                        parentLimsVo.getBioTransaction().setStatus(bioTransactionStatus);
                        iLimsService.createBioTransaction(parentLimsVo);

                        this.info("Biospecimen " + cpModel.getObject().getBiospecimen().getBiospecimenUid()
                                + " was created successfully");
                        setQuantityLabel();
                    }
                } catch (EntityNotFoundException e) {
                    log.error(e.getMessage());
                }
            }
        } else {
            // Update location
            if (cpModel.getObject().getBiospecimenLocationVO().getIsAllocated()) {
                if (cpModel.getObject().getInvCell() != null
                        && cpModel.getObject().getInvCell().getBiospecimen() != null) {
                    iInventoryService.updateInvCell(cpModel.getObject().getInvCell());
                }
            }

            // Update qty avail
            cpModel.getObject().getBiospecimen()
                    .setQuantity(iLimsService.getQuantityAvailable(cpModel.getObject().getBiospecimen()));

            // Update biospecimen
            iLimsService.updateBiospecimen(cpModel.getObject());

            this.info("Biospecimen " + cpModel.getObject().getBiospecimen().getBiospecimenUid()
                    + " was updated successfully");

            // Hide/show barcode image
            barcodeImage.setVisible(cpModel.getObject().getBiospecimen().getBarcoded());
            target.add(barcodeImage);
            setQuantityLabel();
        }

        if (saveOk) {
            // Allow the Biospecimen custom data to be saved any time save is performed
            if (biospecimenCFDataEntryPanel instanceof BiospecimenCustomDataDataViewPanel) {
                ((BiospecimenCustomDataDataViewPanel) biospecimenCFDataEntryPanel).saveCustomData();
            }

            // refresh the custom field data entry panel (if necessary)
            if (initialiseBiospecimenCFDataEntry()) {
                arkCrudContainerVo.getDetailPanelFormContainer().addOrReplace(biospecimenCFDataEntryPanel);
            }

            // refresh the bio transactions (if necessary)
            if (initialiseBioTransactionListPanel()) {
                arkCrudContainerVo.getDetailPanelFormContainer().addOrReplace(bioTransactionListPanel);
            }

            // refresh the location panel
            if (initialiseBiospecimenLocationPanel()) {
                arkCrudContainerVo.getDetailPanelFormContainer().addOrReplace(biospecimenLocationPanel);
            }

            // Disable initial transaction details, and hide inital quantity text box
            bioTransactionDetailWmc.setEnabled(true);
            bioTransactionQuantityTxtFld.setVisible(false);
            quantityTxtFld.setVisible(true);
            // quantityTxtFld.setModelObject(bioTransactionQuantityTxtFld.getModelObject());
            target.add(bioTransactionDetailWmc);

            barcodeImage.setVisible(cpModel.getObject().getBiospecimen().getBarcoded());
            target.add(barcodeImage);

            // Enable/re-enable buttons panel
            initialiseBiospecimenButtonsPanel();

            target.add(biospecimenbuttonsPanel);

            cpModel.getObject().setBiospecimenProcessing("");
            parentQuantityTxtFld.setVisible(false);
            target.add(parentQuantityTxtFld);
            onSavePostProcess(target);
        }
    } catch (ArkSystemException e) {
        this.error(e.getMessage());
    }
    processErrors(target);
}

From source file:au.org.theark.lims.web.component.subjectlims.lims.biospecimen.form.BiospecimenModalDetailForm.java

License:Open Source License

/**
 * Takes all details of a biospecimen, copies to a new Biospecimen, then allows editing of details before save
 * /*  w ww .j  a  v a  2 s . com*/
 * @param target
 */
protected void onCloneBiospecimen(AjaxRequestTarget target) {
    final Biospecimen clonedBiospecimen = cpModel.getObject().getBiospecimen();
    final String clonedBiospecimenUid = clonedBiospecimen.getBiospecimenUid();
    final Biospecimen biospecimen = new Biospecimen();

    try {
        // Copy parent biospecimen details to new biospecimen
        PropertyUtils.copyProperties(biospecimen, clonedBiospecimen);

        // Amend specific fields/detail
        biospecimen.setId(null);

        if (biospecimen.getStudy().getAutoGenerateBiospecimenUid()) {
            biospecimen.setBiospecimenUid(Constants.AUTO_GENERATED);
        } else {
            biospecimen.setBiospecimenUid(null);
        }

        // Cloning not a child biospecimen
        // biospecimen.setParent(clonedBiospecimen);
        // biospecimen.setParentUid(clonedBiospecimen.getBiospecimenUid());

        biospecimen.setSampleType(clonedBiospecimen.getSampleType());
        biospecimen.setBioCollection(clonedBiospecimen.getBioCollection());
        biospecimen.setQuantity(null);
        biospecimen.setUnit(clonedBiospecimen.getUnit());
        biospecimen.setComments("Clone of " + clonedBiospecimenUid);
        biospecimen.setBarcoded(false);
        biospecimen.setQuantity(clonedBiospecimen.getQuantity());
        biospecimen.setUnit(clonedBiospecimen.getUnit());
        biospecimen.setTreatmentType(clonedBiospecimen.getTreatmentType());
        biospecimen.setChildren(new ArrayList<Biospecimen>(0));

        Study studyFromClone = clonedBiospecimen.getStudy();
        // There should be a study and only then do the rest of the code here
        if (studyFromClone != null) {
            Study study = iArkCommonService.getStudy(studyFromClone.getId());
            biospecimen.setStudy(study);
            // Reset the biospecimen detail
            cpModel.getObject().setBiospecimen(biospecimen);

            // Set the bioTransaction detail
            org.apache.shiro.subject.Subject currentUser = SecurityUtils.getSubject();
            cpModel.getObject().getBioTransaction().setRecorder(currentUser.getPrincipal().toString());
            cpModel.getObject().getBioTransaction().setQuantity(null);
            cpModel.getObject().getBioTransaction().setUnit(biospecimen.getUnit());

            enableQuantityTreatment(target);
            CompoundPropertyModel<BiospecimenCustomDataVO> bioCFDataCpModel = new CompoundPropertyModel<BiospecimenCustomDataVO>(
                    new BiospecimenCustomDataVO());
            bioCFDataCpModel.getObject().setBiospecimen(biospecimen);
            bioCFDataCpModel.getObject().setArkFunction(iArkCommonService
                    .getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_BIOSPECIMEN));
            biospecimenCFDataEntryPanel = new BiospecimenCustomDataDataViewPanel("biospecimenCFDataEntryPanel",
                    bioCFDataCpModel).initialisePanel(null);
            arkCrudContainerVo.getDetailPanelFormContainer().addOrReplace(biospecimenCFDataEntryPanel);

            // refresh the bioTransaction panel
            initialiseBioTransactionListPanel();
            arkCrudContainerVo.getDetailPanelFormContainer().addOrReplace(bioTransactionListPanel);

            // refresh the location panel
            cpModel.getObject().setBiospecimenLocationVO(new BiospecimenLocationVO());
            initialiseBiospecimenLocationPanel();
            arkCrudContainerVo.getDetailPanelFormContainer().addOrReplace(biospecimenLocationPanel);
            target.add(biospecimenLocationPanel);

            // Notify in progress
            this.info("Cloning biospecimen " + clonedBiospecimenUid + ", please save to confirm");
            target.add(feedbackPanel);

            // hide button panel
            biospecimenbuttonsPanel.setVisible(false);
            target.add(biospecimenbuttonsPanel);
        } else {
            log.error("Cannot find a study for the cloned biospecimen.");
        }
    } catch (IllegalAccessException e) {
        log.error(e.getMessage());
    } catch (InvocationTargetException e) {
        log.error(e.getMessage());
    } catch (NoSuchMethodException e) {
        log.error(e.getMessage());
    }

}

From source file:au.org.theark.lims.web.component.subjectlims.lims.biospecimen.form.BiospecimenModalDetailForm.java

License:Open Source License

/**
 * Handle processing or aliquoting of a parent biospecimen. Process essentially changing the type of a parent biospecimen. Aliquot essentially
 * taking an amount from a parent biospecimen.
 * /*from   www .  j  ava 2  s .com*/
 * @param target
 *           AjxaxRequestTarget
 * @param processOrAliquot
 *           indication to whether a process or an aliquot
 * @param comment
 *           comment to add to biospecimen comments
 */
protected void processOrAliquot(AjaxRequestTarget target, String processOrAliquot, String comment) {
    final Biospecimen parentBiospecimen = cpModel.getObject().getBiospecimen();
    final String parentBiospecimenUid = parentBiospecimen.getBiospecimenUid();
    final Biospecimen biospecimen = new Biospecimen();

    cpModel.getObject().setParentBiospecimen(parentBiospecimen);

    try {
        // Copy parent biospecimen details to new biospecimen
        PropertyUtils.copyProperties(biospecimen, parentBiospecimen);

        // Amend specific fields/detail
        biospecimen.setId(null);

        if (biospecimen.getStudy().getAutoGenerateBiospecimenUid()) {
            biospecimen.setBiospecimenUid(Constants.AUTO_GENERATED);
        } else {
            biospecimen.setBiospecimenUid(null);
        }
        /***
         * TRAV TO INVESTIGATE ASAP
        // Cloning not a child biospecimen
        // biospecimen.setParent(clonedBiospecimen);
        // biospecimen.setParentUid(clonedBiospecimen.getBiospecimenUid());
        **/

        biospecimen.setParent(parentBiospecimen);
        biospecimen.setParentUid(parentBiospecimen.getBiospecimenUid());
        biospecimen.setSampleType(parentBiospecimen.getSampleType());
        biospecimen.setBioCollection(parentBiospecimen.getBioCollection());
        biospecimen.setQuantity(null);
        biospecimen.setUnit(parentBiospecimen.getUnit());
        biospecimen.setComments(comment + parentBiospecimenUid);
        biospecimen.setBarcoded(false);
        biospecimen.setTreatmentType(parentBiospecimen.getTreatmentType());
        biospecimen.setChildren(new ArrayList<Biospecimen>(0));

        Study studyFromParent = parentBiospecimen.getStudy();
        // There should be a study and only then do the rest of the code here
        if (studyFromParent != null) {
            Study study = iArkCommonService.getStudy(studyFromParent.getId());
            biospecimen.setStudy(study);
            // Reset the biospecimen detail
            cpModel.getObject().setBiospecimen(biospecimen);
            cpModel.getObject().setBiospecimenProcessing(processOrAliquot);
            // Set the bioTransaction detail
            org.apache.shiro.subject.Subject currentUser = SecurityUtils.getSubject();
            cpModel.getObject().getBioTransaction().setRecorder(currentUser.getPrincipal().toString());
            cpModel.getObject().getBioTransaction().setQuantity(null);
            cpModel.getObject().getBioTransaction().setUnit(biospecimen.getUnit()); //TODO: unit
            enableQuantityTreatment(target);
            CompoundPropertyModel<BiospecimenCustomDataVO> bioCFDataCpModel = new CompoundPropertyModel<BiospecimenCustomDataVO>(
                    new BiospecimenCustomDataVO());
            bioCFDataCpModel.getObject().setBiospecimen(biospecimen);
            bioCFDataCpModel.getObject().setArkFunction(iArkCommonService
                    .getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_BIOSPECIMEN));
            biospecimenCFDataEntryPanel = new BiospecimenCustomDataDataViewPanel("biospecimenCFDataEntryPanel",
                    bioCFDataCpModel).initialisePanel(null);
            arkCrudContainerVo.getDetailPanelFormContainer().addOrReplace(biospecimenCFDataEntryPanel);
            // refresh the bioTransaction panel
            initialiseBioTransactionListPanel();
            arkCrudContainerVo.getDetailPanelFormContainer().addOrReplace(bioTransactionListPanel);
            // refresh the location panel
            cpModel.getObject().setBiospecimenLocationVO(new BiospecimenLocationVO());
            initialiseBiospecimenLocationPanel();
            arkCrudContainerVo.getDetailPanelFormContainer().addOrReplace(biospecimenLocationPanel);
            target.add(biospecimenLocationPanel);
            // Notify in progress
            this.info(processOrAliquot + " biospecimen " + cpModel.getObject().getBiospecimen().getParentUid()
                    + ", please save to confirm");
            target.add(feedbackPanel);

            // hide button panel
            biospecimenbuttonsPanel.setVisible(false);
            target.add(biospecimenbuttonsPanel);
        } else {
            log.error("Cannot find a study for the parent biospecimen.");
        }
    } catch (IllegalAccessException e) {
        log.error(e.getMessage());
    } catch (InvocationTargetException e) {
        log.error(e.getMessage());
    } catch (NoSuchMethodException e) {
        log.error(e.getMessage());
    }
}

From source file:au.org.theark.lims.web.component.subjectlims.lims.biospecimen.form.BiospecimenModalDetailForm.java

License:Open Source License

private void initDeleteModelWindow() {
    answer = new ConfirmationAnswer(false);
    confirmModal = new ModalWindow("modal");
    confirmModal.setCookieName("yesNoPanel");
    if (!isNew()) {
        List<BioTransaction> bioTransactions = iLimsService
                .getAllBiotransactionForBiospecimen(cpModel.getObject().getBiospecimen());
        StringBuffer bioTxID = new StringBuffer();
        for (BioTransaction bioTransaction : bioTransactions) {
            bioTxID.append(bioTransaction.getId()).append(",");
        }//from   w ww.j av a  2 s  .  c  o m
        bioTxID.deleteCharAt(bioTxID.length() - 1);
        String modelTextReplce1 = modalText.replaceAll("number", Integer.toString(bioTransactions.size()));
        String modeltextReplace2 = modelTextReplce1.replaceAll("txs", bioTxID.toString());
        confirmModal.setContent(
                new YesNoPanel(confirmModal.getContentId(), modeltextReplace2, confirmModal, answer));
        confirmModal.setWindowClosedCallback(new ModalWindow.WindowClosedCallback() {
            private static final long serialVersionUID = 1L;

            public void onClose(AjaxRequestTarget target) {
                if (answer.isAnswer()) {
                    iLimsService.deleteBiospecimen(cpModel.getObject());
                    getSession().getFeedbackMessages().info(me,
                            "Biospecimen " + cpModel.getObject().getBiospecimen().getBiospecimenUid()
                                    + " was deleted successfully");
                } else {
                    EditModeButtonsPanel editModeButtonsPanel = ((EditModeButtonsPanel) buttonsPanelWMC
                            .get("buttonsPanel"));
                    editModeButtonsPanel.setDeleteButtonEnabled(true);
                    target.add(editModeButtonsPanel);
                }
                target.add(feedbackPanel);
            }
        });
    }
}

From source file:au.org.theark.lims.web.component.subjectlims.lims.LimsContainerPanel.java

License:Open Source License

public void initialisePanel() {
    containerForm = new ContainerForm("containerForm", cpModel);
    containerForm.add(initialiseFeedBackPanel());

    modalWindow = new AbstractDetailModalWindow("detailModalWindow") {
        private static final long serialVersionUID = 1L;

        @Override//  w  ww  .ja  v  a  2s.  c o  m
        protected void onCloseModalWindow(AjaxRequestTarget target) {
            provider = new BiospecimenTreeProvidor(iArkCommonService, iLimsService, cpModel);
            state = new ProviderSubset<Object>(provider);
            ((IDetachable) state).detach();
            state = new InverseSet<Object>(new ProviderSubset<Object>(provider));
            bioTreePanel = new BiospecimenNestedTreePanel("tree", cpModel, provider, newStateModel(),
                    modalWindow);

            containerForm.addOrReplace(bioTreePanel);

            target.add(bioTreePanel);
            target.add(biocollectionListPanel);
            target.add(bioSpecimenListPanel);
        }
    };
    modalWindow.setWindowClosedCallback(new ModalWindow.WindowClosedCallback() {
        private static final long serialVersionUID = 1L;

        public void onClose(AjaxRequestTarget target) {
            provider = new BiospecimenTreeProvidor(iArkCommonService, iLimsService, cpModel);
            state = new ProviderSubset<Object>(provider);
            ((IDetachable) state).detach();
            state = new InverseSet<Object>(new ProviderSubset<Object>(provider));
            bioTreePanel = new BiospecimenNestedTreePanel("tree", cpModel, provider, newStateModel(),
                    modalWindow);

            containerForm.addOrReplace(bioTreePanel);
            target.add(bioTreePanel);
            target.add(biocollectionListPanel);
            target.add(bioSpecimenListPanel);
        }
    });

    biocollectionListPanel = new BioCollectionListPanel("biocollectionListPanel", feedbackPanel, cpModel,
            modalWindow);
    collectionListPanel = biocollectionListPanel;
    containerForm.add(collectionListPanel);

    bioSpecimenListPanel = new BiospecimenListPanel("biospecimenListPanel", feedbackPanel, cpModel,
            modalWindow);
    biospecimenListPanel = bioSpecimenListPanel;

    provider = new BiospecimenTreeProvidor(iArkCommonService, iLimsService, cpModel);
    state = new ProviderSubset<Object>(provider);
    ((IDetachable) state).detach();
    state = new InverseSet<Object>(new ProviderSubset<Object>(provider));
    bioTreePanel = new BiospecimenNestedTreePanel("tree", cpModel, provider, newStateModel(), modalWindow);

    containerForm.add(bioTreePanel);
    containerForm.add(modalWindow);
    containerForm.add(biospecimenListPanel);

    this.add(containerForm);
}

From source file:au.org.theark.lims.web.component.subjectlims.subject.form.DetailForm.java

License:Open Source License

protected void onCancel(AjaxRequestTarget target) {
    // Set study in context back to limsVo.study
    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    if (sessionStudyId != null) {
        //Study study = iArkCommonService.getStudy(sessionStudyId);
        LimsVO limsVo = new LimsVO();
        //limsVo.setStudy(study);
        containerForm.setModelObject(limsVo);

        // Refresh the contextUpdateTarget (remove)
        if (containerForm.getContextUpdateLimsWMC() != null) {
            Panel limsContainerPanel = new EmptyPanel("limsContainerPanel");
            limsContainerPanel.setOutputMarkupPlaceholderTag(true);
            containerForm.getContextUpdateLimsWMC().addOrReplace(limsContainerPanel);
            target.add(containerForm.getContextUpdateLimsWMC());
        }// w w w  .j a  v a  2 s .c  o m
    }
}

From source file:au.org.theark.lims.web.component.subjectlims.subject.form.SearchForm.java

License:Open Source License

protected void onSearch(AjaxRequestTarget target) {
    target.add(feedbackPanel);

    List<Study> studyList = new ArrayList<Study>(0);

    // Restrict search if Study selected in Search form
    if (cpmModel.getObject().getStudy() != null) {
        studyList.add(cpmModel.getObject().getStudy());
    } else {/*from w  w w. j a  v  a  2  s.c  om*/
        studyList = cpmModel.getObject().getStudyList();
        if (studyList.isEmpty()) {
            log.error("StudyList is empty, shouldn't happen!");
            studyList = getStudyListForUser();
        }
    }

    int count = iLimsSubjectService.getSubjectCount(cpmModel.getObject(), studyList);
    if (count == 0) {
        this.info("There are no subjects with the specified criteria.");
        target.add(feedbackPanel);
    }

    arkCrudContainerVO.getSearchResultPanelContainer().setVisible(true);
    target.add(arkCrudContainerVO.getSearchResultPanelContainer());
}

From source file:au.org.theark.lims.web.component.subjectlims.subject.SearchResultListPanel.java

License:Open Source License

/**
 * Builds the link for selection of subject (gets from database to ensure persistence)s
 * // ww w.  j  a  v  a  2s . c o m
 * @param subject
 * @return
 */
private AjaxLink buildLink(final LinkSubjectStudy subject) {
    ArkBusyAjaxLink link = new ArkBusyAjaxLink("subjectUID") {
        @Override
        public void onClick(AjaxRequestTarget target) {
            LinkSubjectStudy subjectFromBackend = new LinkSubjectStudy();
            try {

                subjectFromBackend = iArkCommonService.getSubjectByUID(subject.getSubjectUID(),
                        subject.getStudy());
            } catch (EntityNotFoundException e) {
                log.error(e.getMessage());
            }

            // Set SubjectUID into context
            SecurityUtils.getSubject().getSession().setAttribute(au.org.theark.core.Constants.SUBJECTUID,
                    subjectFromBackend.getSubjectUID());
            SecurityUtils.getSubject().getSession().setAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID,
                    subjectFromBackend.getStudy().getId());

            SecurityUtils.getSubject().getSession().setAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID,
                    subject.getPerson().getId());
            SecurityUtils.getSubject().getSession().setAttribute(au.org.theark.core.Constants.PERSON_TYPE,
                    au.org.theark.core.Constants.PERSON_CONTEXT_TYPE_SUBJECT);

            // Force clearing of Cache to re-load roles for the user for the study
            arkLdapRealm.clearCachedAuthorizationInfo(SecurityUtils.getSubject().getPrincipals());
            aafRealm.clearCachedAuthorizationInfo(SecurityUtils.getSubject().getPrincipals());

            LimsVO limsVo = new LimsVO();
            limsVo.setLinkSubjectStudy(subjectFromBackend);
            //limsVo.setStudy(subjectFromBackend.getStudy());
            containerForm.setModelObject(limsVo);

            // Set context items
            ContextHelper contextHelper = new ContextHelper();
            //contextHelper.setStudyContextLabel(target, subjectFromBackend.getStudy().getName(), arkContextMarkup);
            //contextHelper.setSubjectContextLabel(target, subjectFromBackend.getSubjectUID(), arkContextMarkup);

            // Always disable subjectUID
            DetailPanel details = (DetailPanel) arkCrudContainerVO.getDetailPanelContainer()
                    .get("detailsPanel");
            DetailForm detailsForm = (DetailForm) details.get("detailsForm");
            detailsForm.getSubjectUIDTxtFld().setEnabled(false);

            ArkCRUDHelper.preProcessDetailPanelOnSearchResults(target, arkCrudContainerVO);
            arkCrudContainerVO.getEditButtonContainer().setVisible(false);

            // Refresh the contextUpdateTarget (add)
            if (containerForm.getContextUpdateLimsWMC() != null) {
                Panel limsContainerPanel = new LimsContainerPanel("limsContainerPanel", arkContextMarkup,
                        containerForm.getModel());
                containerForm.getContextUpdateLimsWMC().setVisible(true);
                containerForm.getContextUpdateLimsWMC().addOrReplace(limsContainerPanel);
                //details.limsContainerPanel.replaceWith(limsContainerPanel);
                details.addOrReplace(containerForm.getContextUpdateLimsWMC());
                target.add(details);
            }

            // Set Study Logo
            studyHelper = new StudyHelper();
            StudyCrudContainerVO studyCrudContainerVO = new StudyCrudContainerVO();
            studyCrudContainerVO.setStudyNameMarkup(studyNameMarkup);
            studyCrudContainerVO.setStudyLogoMarkup(studyLogoMarkup);
            studyHelper.setStudyLogo(subjectFromBackend.getStudy(), target,
                    studyCrudContainerVO.getStudyNameMarkup(), studyCrudContainerVO.getStudyLogoMarkup());
        }
    };
    Label nameLinkLabel = new Label(Constants.SUBJECT_KEY_LBL, subject.getSubjectUID());
    link.add(nameLinkLabel);
    return link;
}

From source file:au.org.theark.lims.web.component.subjectlims.subject.SubjectContainerPanel.java

License:Open Source License

protected boolean prerenderContextCheck() {
    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    String sessionSubjectUID = (String) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.SUBJECTUID);
    boolean contextLoaded = false;

    // Force clearing of Cache to re-load roles for the user for the study
    arkLdapRealm.clearCachedAuthorizationInfo(SecurityUtils.getSubject().getPrincipals());
    aafRealm.clearCachedAuthorizationInfo(SecurityUtils.getSubject().getPrincipals());

    Study study = null;/*from  www  .j  a  v  a2 s  . c o m*/
    if (sessionStudyId != null) {
        study = iArkCommonService.getStudy(sessionStudyId);
    }

    if ((sessionStudyId != null) && (sessionSubjectUID != null)) {
        LinkSubjectStudy subjectFromBackend = new LinkSubjectStudy();

        try {
            subjectFromBackend = iArkCommonService.getSubjectByUID(sessionSubjectUID, study);

            // Set SubjectUID into context
            SecurityUtils.getSubject().getSession().setAttribute(au.org.theark.core.Constants.SUBJECTUID,
                    subjectFromBackend.getSubjectUID());
            SecurityUtils.getSubject().getSession().setAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID,
                    subjectFromBackend.getStudy().getId());

            SecurityUtils.getSubject().getSession().setAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID,
                    subjectFromBackend.getPerson().getId());
            SecurityUtils.getSubject().getSession().setAttribute(au.org.theark.core.Constants.PERSON_TYPE,
                    au.org.theark.core.Constants.PERSON_CONTEXT_TYPE_SUBJECT);
        } catch (EntityNotFoundException e) {
            log.error(e.getMessage());
        }

        if (study != null && subjectFromBackend != null) {
            // Study and subject in context
            contextLoaded = true;
            LimsVO limsVo = new LimsVO();
            limsVo.setLinkSubjectStudy(subjectFromBackend);
            limsVo.setStudy(subjectFromBackend.getStudy());
            limsVo.setTreeModel(treeModel);
            containerForm.setModelObject(limsVo);
        }

        if (contextLoaded) {
            // Put into Detail View mode
            arkCrudContainerVO.getSearchPanelContainer().setVisible(false);
            arkCrudContainerVO.getSearchResultPanelContainer().setVisible(false);
            arkCrudContainerVO.getDetailPanelContainer().setVisible(true);
            arkCrudContainerVO.getDetailPanelFormContainer().setEnabled(false);
            //arkCrudContainerVO.getViewButtonContainer().setVisible(true);
            arkCrudContainerVO.getEditButtonContainer().setVisible(false);

            if (containerForm.getContextUpdateLimsWMC() != null) {
                Panel limsContainerPanel = new LimsContainerPanel("limsContainerPanel", arkContextMarkup,
                        containerForm.getModel());
                containerForm.getContextUpdateLimsWMC().setVisible(true);

                detailsPanel.addOrReplace(containerForm.getContextUpdateLimsWMC());
                containerForm.getContextUpdateLimsWMC().addOrReplace(limsContainerPanel);
                AjaxRequestTarget target = AjaxRequestTarget.get();
                target.add(detailsPanel);
            }
        }
    }

    return contextLoaded;
}