Example usage for org.apache.wicket.ajax AjaxRequestTarget add

List of usage examples for org.apache.wicket.ajax AjaxRequestTarget add

  1. HOME
  2. Java
  3. org.apache.wicket
  4. org.apache.wicket.ajax.*
  5. AjaxRequestTarget
  6. add

Introduction

In this page you can find the example usage for org.apache.wicket.ajax AjaxRequestTarget add.

Prototype

void add(Component... components);

Source Link

Document

Adds components to the list of components to be rendered.

Usage

From source file:au.org.theark.study.web.component.studycomponent.form.SearchForm.java

License:Open Source License

@Override
protected void onSearch(AjaxRequestTarget target) {

    target.add(feedbackPanel);
    try {// w w w. j a  va2  s.com

        List<StudyComp> resultList = studyService.searchStudyComp(getModelObject().getStudyComponent());

        if (resultList != null && resultList.size() == 0) {
            this.info("Study Component with the specified criteria does not exist in the system.");
            target.add(feedbackPanel);
        }

        getModelObject().setStudyCompList(resultList);
        listView.removeAll();

        arkCrudContainerVO.getSearchResultPanelContainer().setVisible(true);
        target.add(arkCrudContainerVO.getSearchResultPanelContainer());
    } catch (ArkSystemException arkEx) {
        this.error("A system error has occured. Please try after sometime.");
    }

}

From source file:au.org.theark.study.web.component.subject.form.DetailForm.java

License:Open Source License

@SuppressWarnings("unchecked")
public void initialiseDetailForm() {
    subjectUIDTxtFld = new TextField<String>(Constants.SUBJECT_UID) {

        private static final long serialVersionUID = 1L;

        @Override//from ww  w .j  av  a 2  s .  c om
        protected void onBeforeRender() {
            boolean isNew = isNew();
            boolean autoGenerate = containerForm.getModelObject().getLinkSubjectStudy().getStudy()
                    .getAutoGenerateSubjectUid();
            if (isNew && !autoGenerate) {
                setEnabled(true);
            } else {
                setEnabled(false);
            }
            super.onBeforeRender();
        }
    };
    subjectUIDTxtFld.setOutputMarkupId(true);

    firstNameTxtFld = new TextField<String>(Constants.PERSON_FIRST_NAME);
    middleNameTxtFld = new TextField<String>(Constants.PERSON_MIDDLE_NAME);
    lastNameTxtFld = new TextField<String>(Constants.PERSON_LAST_NAME);
    previousLastNameTxtFld = new TextField<String>(Constants.SUBJECT_PREVIOUS_LAST_NAME) {
        private static final long serialVersionUID = 1L;

        @Override
        protected void onBeforeRender() {
            if (!isNew()) {
                String subjectPreviousLastname = iArkCommonService
                        .getPreviousLastname(containerForm.getModelObject().getLinkSubjectStudy().getPerson());
                containerForm.getModelObject().setSubjectPreviousLastname(subjectPreviousLastname);
            }
            setEnabled(isNew());

            super.onBeforeRender();
        }
    };
    preferredNameTxtFld = new TextField<String>(Constants.PERSON_PREFERRED_NAME);

    otherIdWebMarkupContainer = new WebMarkupContainer("otherIDWMC");
    otherIdListView = new AbstractListEditor<OtherID>("linkSubjectStudy.person.otherIDs") {

        private static final long serialVersionUID = 1L;

        @Override
        protected void onPopulateItem(ListItem<OtherID> item) {
            PropertyModel<String> otherIDpropModel = new PropertyModel<String>(item.getModelObject(),
                    "otherID");
            PropertyModel<String> otherIDSourcepropModel = new PropertyModel<String>(item.getModelObject(),
                    "otherID_Source");
            TextField<String> otherIdTxtFld = new TextField<String>("otherid", otherIDpropModel);
            otherIdTxtFld.setRequired(true);
            TextField<String> otherIdSourceTxtFld = new TextField<String>("otherid_source",
                    otherIDSourcepropModel);
            otherIdSourceTxtFld.setRequired(true);
            item.add(otherIdTxtFld);
            item.add(otherIdSourceTxtFld);
            item.add(new AjaxButton("delete") {
                @Override
                protected void onSubmit(AjaxRequestTarget target, Form<?> form) {
                    studyService.delete(item.getModelObject());
                    otherIdListView.getModelObject().remove(item.getIndex());

                    target.add(otherIdWebMarkupContainer);
                }

                @Override
                protected void onError(AjaxRequestTarget target, Form<?> form) {
                    onSubmit(target, form);
                }
            });
            item.add(new AttributeModifier(Constants.CLASS, new AbstractReadOnlyModel() {
                @Override
                public String getObject() {
                    return (item.getIndex() % 2 == 1) ? Constants.EVEN : Constants.ODD;
                }
            }));

        }
    };
    otherIdWebMarkupContainer.setOutputMarkupId(true);

    addNewOtherIdBtn = new AjaxButton("newOtherID") {
        private static final long serialVersionUID = 1L;

        @Override
        protected void onSubmit(AjaxRequestTarget target, Form<?> form) {
            OtherID newOtherID = new OtherID();
            newOtherID.setPerson(containerForm.getModelObject().getLinkSubjectStudy().getPerson());
            otherIdListView.getModelObject().add(newOtherID);
            target.add(otherIdWebMarkupContainer);
            super.onSubmit(target, form);
        }
    };
    addNewOtherIdBtn.setDefaultFormProcessing(false);
    otherIdWebMarkupContainer.add(otherIdListView);
    otherIdWebMarkupContainer.add(addNewOtherIdBtn);

    preferredEmailTxtFld = new TextField<String>(Constants.PERSON_PREFERRED_EMAIL);
    otherEmailTxtFld = new TextField<String>(Constants.PERSON_OTHER_EMAIL);

    heardAboutStudyTxtFld = new TextField<String>(Constants.SUBJECT_HEARD_ABOUT_STUDY_FROM);
    dateOfBirthTxtFld = new DateTextField(Constants.PERSON_DOB, au.org.theark.core.Constants.DD_MM_YYYY);
    ArkDatePicker dobDatePicker = new ArkDatePicker();
    dobDatePicker.bind(dateOfBirthTxtFld);
    dateOfBirthTxtFld.add(dobDatePicker);
    currentOrDeathageLable = new Label(Constants.PERSON_CURRENT_OR_DEATH_AGE);
    currentOrDeathageLable.setOutputMarkupId(true);

    dateOfBirthTxtFld.add(new AjaxFormComponentUpdatingBehavior("onchange") {
        private static final long serialVersionUID = 1L;

        @Override
        protected void onUpdate(AjaxRequestTarget target) {
            //update label at date of birth change.
            setCurrentOrDeathAgeLabel();
            setDeathDetailsContainer();
            target.add(wmcDeathDetailsContainer);
            target.add(currentOrDeathageLable);
        }
    });

    dateLastKnownAliveTxtFld = new DateTextField("linkSubjectStudy.person.dateLastKnownAlive",
            au.org.theark.core.Constants.DD_MM_YYYY);
    ArkDatePicker dateLastKnownAlivePicker = new ArkDatePicker();
    dateLastKnownAlivePicker.bind(dateLastKnownAliveTxtFld);
    dateLastKnownAliveTxtFld.add(dateLastKnownAlivePicker);

    dateOfDeathTxtFld = new DateTextField(Constants.PERSON_DOD, au.org.theark.core.Constants.DD_MM_YYYY);
    causeOfDeathTxtFld = new TextField<String>(Constants.PERSON_CAUSE_OF_DEATH);
    ArkDatePicker dodDatePicker = new ArkDatePicker();
    dodDatePicker.bind(dateOfDeathTxtFld);
    dateOfDeathTxtFld.add(dodDatePicker);

    dateOfDeathTxtFld.add(new AjaxFormComponentUpdatingBehavior("onchange") {
        private static final long serialVersionUID = 1L;

        @Override
        protected void onUpdate(AjaxRequestTarget target) {
            //update label at date of text change.
            setCurrentOrDeathAgeLabel();
            setDeathDetailsContainer();
            target.add(wmcDeathDetailsContainer);
            target.add(currentOrDeathageLable);
        }
    });

    commentTxtAreaFld = new TextArea<String>(Constants.PERSON_COMMENT);

    wmcDeathDetailsContainer = new WebMarkupContainer("deathDetailsContainer");
    wmcDeathDetailsContainer.setOutputMarkupId(true);

    // Default death details to disabled (enable onChange of vitalStatus)
    setDeathDetailsContainer();

    // Initialise Drop Down Choices
    // We can also have the reference data populated on Application start
    // and refer to a static list instead of hitting the database

    // Title
    Collection<TitleType> titleTypeList = iArkCommonService.getTitleType();
    ChoiceRenderer<TitleType> defaultChoiceRenderer = new ChoiceRenderer<TitleType>(Constants.NAME,
            Constants.ID);
    titleTypeDdc = new DropDownChoice<TitleType>(Constants.PERSON_TYTPE_TYPE, (List) titleTypeList,
            defaultChoiceRenderer);
    titleTypeDdc.add(new ArkDefaultFormFocusBehavior());

    // Preferred Status
    Collection<EmailStatus> allEmailStatusList = iArkCommonService.getAllEmailStatuses();
    ChoiceRenderer<EmailStatus> preferredEmailStatusRenderer = new ChoiceRenderer<EmailStatus>(Constants.NAME,
            Constants.ID);
    preferredEmailStatusDdc = new DropDownChoice<EmailStatus>(Constants.PERSON_PREFERRED_EMAIL_STATUS,
            (List<EmailStatus>) allEmailStatusList, preferredEmailStatusRenderer);

    // Email Status
    //      Collection<EmailStatus> emailStatusList = iArkCommonService.getEmailStatus();
    ChoiceRenderer<EmailStatus> otherEmailStatusRenderer = new ChoiceRenderer<EmailStatus>(Constants.NAME,
            Constants.ID);
    otherEmailStatusDdc = new DropDownChoice<EmailStatus>(Constants.PERSON_OTHER_EMAIL_STATUS,
            (List<EmailStatus>) allEmailStatusList, otherEmailStatusRenderer);

    // Vital Status
    Collection<VitalStatus> vitalStatusList = iArkCommonService.getVitalStatus();
    ChoiceRenderer<VitalStatus> vitalStatusRenderer = new ChoiceRenderer<VitalStatus>(Constants.NAME,
            Constants.ID);
    vitalStatusDdc = new DropDownChoice<VitalStatus>(Constants.PERSON_VITAL_STATUS,
            (List<VitalStatus>) vitalStatusList, vitalStatusRenderer);
    vitalStatusDdc.add(new AjaxFormComponentUpdatingBehavior("onchange") {
        private static final long serialVersionUID = 1L;

        @Override
        protected void onUpdate(AjaxRequestTarget target) {
            //update label at vital status change.
            setCurrentOrDeathAgeLabel();
            setDeathDetailsContainer();
            target.add(wmcDeathDetailsContainer);
            target.add(currentOrDeathageLable);
        }
    });

    //initialise the current or death label.
    setCurrentOrDeathAgeLabel();

    // Gender Type
    Collection<GenderType> genderTypeList = iArkCommonService.getGenderTypes();
    ChoiceRenderer<GenderType> genderTypeRenderer = new ChoiceRenderer<GenderType>(Constants.NAME,
            Constants.ID);
    genderTypeDdc = new DropDownChoice<GenderType>(Constants.PERSON_GENDER_TYPE,
            (List<GenderType>) genderTypeList, genderTypeRenderer);

    // Subject Status
    List<SubjectStatus> subjectStatusList = iArkCommonService.getSubjectStatus();
    ChoiceRenderer<SubjectStatus> subjectStatusRenderer = new ChoiceRenderer<SubjectStatus>(Constants.NAME,
            Constants.SUBJECT_STATUS_ID);
    subjectStatusDdc = new DropDownChoice<SubjectStatus>(Constants.SUBJECT_STATUS, subjectStatusList,
            subjectStatusRenderer);
    subjectStatusDdc.add(new AjaxFormComponentUpdatingBehavior("onchange") {

        private static final long serialVersionUID = 1L;

        @Override
        protected void onUpdate(AjaxRequestTarget target) {
            if (subjectStatusDdc.getModelObject().getName().equalsIgnoreCase("Archive")) {
                Biospecimen biospecimenCriteria = new Biospecimen();
                biospecimenCriteria.setLinkSubjectStudy(containerForm.getModelObject().getLinkSubjectStudy());
                biospecimenCriteria.setStudy(containerForm.getModelObject().getLinkSubjectStudy().getStudy());
                // check no biospecimens exist
                long count = iLimsService.getBiospecimenCount(biospecimenCriteria);
                if (count > 0) {
                    error("You cannot archive this subject as there are Biospecimens associated ");
                    target.focusComponent(subjectStatusDdc);
                }
            }
            processErrors(target);
        }
    });

    // Marital Status
    Collection<MaritalStatus> maritalStatusList = iArkCommonService.getMaritalStatus();
    ChoiceRenderer<MaritalStatus> maritalStatusRender = new ChoiceRenderer<MaritalStatus>(Constants.NAME,
            Constants.ID);
    maritalStatusDdc = new DropDownChoice<MaritalStatus>(Constants.PERSON_MARITAL_STATUS,
            (List) maritalStatusList, maritalStatusRender);

    // Container for preferredEmail (required when Email selected as preferred contact)
    wmcPreferredEmailContainer = new WebMarkupContainer("preferredEmailContainer");
    wmcPreferredEmailContainer.setOutputMarkupPlaceholderTag(true);
    // Depends on preferredContactMethod
    setPreferredEmailContainer();

    // Person Contact Method
    List<PersonContactMethod> contactMethodList = iArkCommonService.getPersonContactMethodList();
    ChoiceRenderer<PersonContactMethod> contactMethodRender = new ChoiceRenderer<PersonContactMethod>(
            Constants.NAME, Constants.ID);
    personContactMethodDdc = new DropDownChoice<PersonContactMethod>(Constants.PERSON_CONTACT_METHOD,
            (List<PersonContactMethod>) contactMethodList, contactMethodRender);
    personContactMethodDdc.add(new AjaxFormComponentUpdatingBehavior("onchange") {

        private static final long serialVersionUID = 1L;

        @Override
        protected void onUpdate(AjaxRequestTarget target) {
            // Check what was selected and then toggle
            setPreferredEmailContainer();
            target.add(wmcPreferredEmailContainer);
        }
    });

    initConsentFields();

    attachValidators();
    addDetailFormComponents();

    deleteButton.setVisible(false);

    historyButtonPanel = new HistoryButtonPanel(containerForm, arkCrudContainerVO.getEditButtonContainer(),
            arkCrudContainerVO.getDetailPanelFormContainer());
}

From source file:au.org.theark.study.web.component.subject.form.DetailForm.java

License:Open Source License

@Override
protected void onSave(Form<SubjectVO> containerForm, AjaxRequestTarget target) {

    target.add(arkCrudContainerVO.getDetailPanelContainer());

    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    if (studyId == null) {
        // No study in context
        this.error("There is no study in Context. Please select a study to manage a subject.");
        processErrors(target);/*from ww  w. j a v a  2s.co  m*/
    } else {

        study = iArkCommonService.getStudy(studyId);
        saveUpdateProcess(containerForm.getModelObject(), target);
        // String subjectPreviousLastname = iArkCommonService.getPreviousLastname(containerForm.getModelObject().getSubjectStudy().getPerson());
        // containerForm.getModelObject().setSubjectPreviousLastname(subjectPreviousLastname);
        ContextHelper contextHelper = new ContextHelper();
        contextHelper.resetContextLabel(target, arkContextMarkupContainer);
        contextHelper.setStudyContextLabel(target, study.getName(), arkContextMarkupContainer);
        contextHelper.setSubjectContextLabel(target,
                containerForm.getModelObject().getLinkSubjectStudy().getSubjectUID(),
                arkContextMarkupContainer);

        SecurityUtils.getSubject().getSession().setAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID,
                containerForm.getModelObject().getLinkSubjectStudy().getPerson().getId());
        // We specify the type of person here as Subject
        SecurityUtils.getSubject().getSession().setAttribute(au.org.theark.core.Constants.PERSON_TYPE,
                au.org.theark.core.Constants.PERSON_CONTEXT_TYPE_SUBJECT);
        arkCrudContainerVO.getDetailPanelContainer().setVisible(true);
    }
}

From source file:au.org.theark.study.web.component.subject.form.SearchForm.java

License:Open Source License

@SuppressWarnings("unchecked")
private void initStudyDdc() {
    CompoundPropertyModel<SubjectVO> subjectCpm = cpmModel;
    PropertyModel<Study> studyPm = new PropertyModel<Study>(subjectCpm, "linkSubjectStudy.study");
    ChoiceRenderer choiceRenderer = new ChoiceRenderer(Constants.NAME, Constants.ID);
    List<Study> studyListForUser = new ArrayList<Study>(0);
    try {/*ww  w.  j  a  va2 s  . co  m*/
        Subject currentUser = SecurityUtils.getSubject();
        ArkUser arkUser = iArkCommonService.getArkUser(currentUser.getPrincipal().toString());
        ArkUserVO arkUserVo = new ArkUserVO();
        arkUserVo.setArkUserEntity(arkUser);

        //Long sessionArkModuleId = (Long) SecurityUtils.getSubject().getSession().getAttribute(au.org.theark.core.Constants.ARK_MODULE_KEY);
        //ArkModule arkModule = null;
        //arkModule = iArkCommonService.getArkModuleById(sessionArkModuleId);
        //studyListForUser = iArkCommonService.getStudyListForUserAndModule(arkUserVo, arkModule);

        Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
                .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
        if (sessionStudyId != null) {
            studyListForUser = iArkCommonService.getParentAndChildStudies(sessionStudyId);
            cpmModel.getObject().setStudyList(studyListForUser);
        }
    } catch (EntityNotFoundException e) {
        log.error(e.getMessage());
    }
    ChoiceRenderer<Study> studyRenderer = new ChoiceRenderer<Study>(Constants.NAME, Constants.ID);
    studyDdc = new DropDownChoice<Study>("study", studyPm, (List<Study>) studyListForUser, studyRenderer);
    studyDdc.add(new AjaxFormComponentUpdatingBehavior("onchange") {

        /**
         * 
         */
        private static final long serialVersionUID = 1L;

        @Override
        protected void onUpdate(AjaxRequestTarget target) {
            SecurityUtils.getSubject().getSession().setAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID,
                    studyDdc.getModelObject().getId());
            ContextHelper contextHelper = new ContextHelper();
            contextHelper.resetContextLabel(target, arkContextMarkup);
            contextHelper.setStudyContextLabel(target, studyDdc.getModelObject().getName(), arkContextMarkup);
            StudyHelper studyHelper = new StudyHelper();
            studyHelper.setStudyLogo(studyDdc.getModelObject(), target, studyNameMarkup, studyLogoMarkup);
            target.add(SearchForm.this);
        }
    });
}

From source file:au.org.theark.study.web.component.subject.form.SearchForm.java

License:Open Source License

@SuppressWarnings("unchecked")
protected void onNew(AjaxRequestTarget target) {
    // Disable SubjectUID if auto-generation set
    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study studyInContext = iArkCommonService.getStudy(sessionStudyId);
    if ((studyInContext != null) && (studyInContext.getAutoGenerateSubjectUid())) {
        TextField<String> subjectUIDTxtFld = (TextField<String>) arkCrudContainerVO
                .getDetailPanelFormContainer().get(Constants.SUBJECT_UID);
        getModelObject().getLinkSubjectStudy().setSubjectUID(Constants.SUBJECT_AUTO_GENERATED);
        subjectUIDTxtFld.setEnabled(false);
        target.add(subjectUIDTxtFld);
    } else {/* w  w  w  .  jav a  2 s  . com*/
        TextField<String> subjectUIDTxtFld = (TextField<String>) arkCrudContainerVO
                .getDetailPanelFormContainer().get(Constants.SUBJECT_UID);
        subjectUIDTxtFld.setEnabled(true);
        target.add(subjectUIDTxtFld);
    }

    // Available child studies
    List<Study> availableChildStudies = new ArrayList<Study>(0);
    if (studyInContext.getParentStudy() != null) {
        availableChildStudies = iStudyService.getChildStudyListOfParent(studyInContext);
    }
    getModelObject().setAvailableChildStudies(availableChildStudies);

    getModelObject().getLinkSubjectStudy().getPerson().getOtherIDs().clear();
    if (!otherIDTxtFld.getValue().isEmpty()) {
        OtherID searchedOtherID = new OtherID();
        searchedOtherID.setOtherID(otherIDTxtFld.getValue());
        getModelObject().getLinkSubjectStudy().getPerson().getOtherIDs().add(searchedOtherID);
    }

    preProcessDetailPanel(target);
}

From source file:au.org.theark.study.web.component.subject.form.SearchForm.java

License:Open Source License

protected void onSearch(AjaxRequestTarget target) {
    target.add(feedbackPanel);
    //Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession().getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    //getModelObject().getLinkSubjectStudy().setStudy(iArkCommonService.getStudy(sessionStudyId));

    //getModelObject().getLinkSubjectStudy().getStudy();

    String otherIDSearch = otherIDTxtFld.getValue();
    if (otherIDSearch != null) {
        OtherID o = new OtherID();
        o.setOtherID(otherIDSearch);/*from   w  w  w  .  j a  v a 2  s.co  m*/
        List<OtherID> otherIDs = new ArrayList<OtherID>();
        otherIDs.add(o);
        cpmModel.getObject().getLinkSubjectStudy().getPerson().getOtherIDs().clear();//setOtherIDs(otherIDs);
        log.info("onsearch otherids: " + cpmModel.getObject().getLinkSubjectStudy().getPerson().getOtherIDs());
        cpmModel.getObject().getLinkSubjectStudy().getPerson().getOtherIDs().add(o);
    }
    long count = iArkCommonService.getStudySubjectCount(cpmModel.getObject());
    if (count == 0L) {
        this.info("There are no subjects with the specified criteria.");
        target.add(feedbackPanel);
    }
    arkCrudContainerVO.getSearchResultPanelContainer().setVisible(true);
    target.add(arkCrudContainerVO.getSearchResultPanelContainer());// For ajax this is required so
}

From source file:au.org.theark.study.web.component.subject.SearchResultListPanel.java

License:Open Source License

/**
 * Create new parent relationship in database for valid relationship.
 * //from   www. j ava2s.co m
 * @param subject
 * @param modalWindow
 * @param relatives
 * @param feedbackPanel
 * @param target
 */
private void processParentSelection(final SubjectVO subject, final AbstractDetailModalWindow modalWindow,
        final List<RelationshipVo> relatives, final FeedbackPanel feedbackPanel, AjaxRequestTarget target) {

    String message;

    Boolean inbreedAllowed = (Boolean) SecurityUtils.getSubject().getSession()
            .getAttribute(Constants.INBREED_ALLOWED);

    if (BooleanUtils.isNotTrue(inbreedAllowed)
            && (message = getCircularRelationships(subject, relatives)) != null && message.length() > 0) {
        this.error(message);
        target.add(feedbackPanel);
        return;
    }

    LinkSubjectPedigree pedigreeRelationship = new LinkSubjectPedigree();

    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);

    Study study = iArkCommonService.getStudy(sessionStudyId);

    String subjectUID = (String) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.SUBJECTUID);

    String parentUID = subject.getLinkSubjectStudy().getSubjectUID();

    SubjectVO criteriaSubjectVo = new SubjectVO();
    criteriaSubjectVo.getLinkSubjectStudy().setStudy(study);
    criteriaSubjectVo.getLinkSubjectStudy().setSubjectUID(subjectUID);
    Collection<SubjectVO> subjects = iArkCommonService.getSubject(criteriaSubjectVo);
    SubjectVO subjectVo = subjects.iterator().next();
    pedigreeRelationship.setSubject(subjectVo.getLinkSubjectStudy());

    criteriaSubjectVo.getLinkSubjectStudy().setSubjectUID(parentUID);
    subjects = iArkCommonService.getSubject(criteriaSubjectVo);
    subjectVo = subjects.iterator().next();
    pedigreeRelationship.setRelative(subjectVo.getLinkSubjectStudy());

    String gender = subject.getLinkSubjectStudy().getPerson().getGenderType().getName();

    List<Relationship> relationships = iArkCommonService.getFamilyRelationships();
    for (Relationship relationship : relationships) {
        if ("Male".equalsIgnoreCase(gender) && "Father".equalsIgnoreCase(relationship.getName())) {
            pedigreeRelationship.setRelationship(relationship);
            break;
        }

        if ("Female".equalsIgnoreCase(gender) && "Mother".equalsIgnoreCase(relationship.getName())) {
            pedigreeRelationship.setRelationship(relationship);
            break;
        }
    }

    iStudyService.create(pedigreeRelationship);
    modalWindow.close(target);
}

From source file:au.org.theark.study.web.component.subject.SearchResultListPanel.java

License:Open Source License

/**
 * @deprecated//from   w  w  w .  ja va2  s .c o m
 * 
 * After select a parent validate the pedigree for circular relationships
 * and create new parent relationship in database.
 * 
 * @param subject
 * @param modalWindow
 * @param relatives
 * @param feedbackPanel
 * @param target
 * 
 */
private void processParentSelectionOld(final SubjectVO subject, final AbstractDetailModalWindow modalWindow,
        final List<RelationshipVo> relatives, final FeedbackPanel feedbackPanel, AjaxRequestTarget target,
        boolean inbreedAllowed) {
    LinkSubjectPedigree pedigreeRelationship = new LinkSubjectPedigree();

    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);

    Study study = iArkCommonService.getStudy(sessionStudyId);

    String subjectUID = (String) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.SUBJECTUID);

    String parentUID = subject.getLinkSubjectStudy().getSubjectUID();

    // Circular validation
    StringBuilder pedigree = new StringBuilder();
    ArrayList<String> dummyParents = new ArrayList<String>();
    boolean firstLine = true;

    List<RelationshipVo> existingRelatives = new ArrayList<RelationshipVo>();
    existingRelatives.addAll(relatives);

    RelationshipVo proband = new RelationshipVo();
    proband.setIndividualId(subjectUID);
    System.out.println("Existing relatives list size: " + existingRelatives.size());
    for (RelationshipVo relative : existingRelatives) {
        System.out.println("Existing relatives UID: " + relative.getIndividualId() + " Father: "
                + relative.getFatherId() + " Mother:" + relative.getMotherId());
        if ("Father".equalsIgnoreCase(relative.getRelationship())) {
            proband.setFatherId(relative.getIndividualId());
        }

        if ("Mother".equalsIgnoreCase(relative.getRelationship())) {
            proband.setMotherId(relative.getIndividualId());
        }
    }

    if (subject.getLinkSubjectStudy().getPerson().getGenderType().getName().startsWith("M")) {
        proband.setFatherId(parentUID);
    } else if (subject.getLinkSubjectStudy().getPerson().getGenderType().getName().startsWith("F")) {
        proband.setMotherId(parentUID);
    }
    existingRelatives.add(proband);

    List<RelationshipVo> newRelatives = iStudyService.generateSubjectPedigreeRelativeList(parentUID,
            sessionStudyId);

    RelationshipVo parent = new RelationshipVo();
    parent.setIndividualId(parentUID);
    for (RelationshipVo relative : newRelatives) {
        if ("Father".equalsIgnoreCase(relative.getRelationship())) {
            parent.setFatherId(relative.getIndividualId());
        }

        if ("Mother".equalsIgnoreCase(relative.getRelationship())) {
            parent.setMotherId(relative.getIndividualId());
        }
    }

    newRelatives.add(parent);

    for (RelationshipVo relative : newRelatives) {
        if (!existingRelatives.contains(relative)) {
            existingRelatives.add(relative);
        } else {
            for (RelationshipVo existingRelative : existingRelatives) {
                if (relative.getIndividualId().equals(existingRelative.getIndividualId())) {
                    if (existingRelative.getFatherId() == null) {
                        existingRelative.setFatherId(relative.getFatherId());
                    }
                    if (existingRelative.getMotherId() == null) {
                        existingRelative.setMotherId(relative.getMotherId());
                    }
                }
            }
        }
    }

    for (RelationshipVo relative : existingRelatives) {
        String dummyParent = "D-";
        String father = relative.getFatherId();
        String mother = relative.getMotherId();
        String individual = relative.getIndividualId();

        if (father != null) {
            dummyParent = dummyParent + father;
        }

        if (mother != null) {
            dummyParent = dummyParent + mother;
        }

        if (!"D-".equals(dummyParent) && !dummyParents.contains(dummyParent)) {
            dummyParents.add(dummyParent);
            if (father != null) {
                if (firstLine) {
                    pedigree.append(father + " " + dummyParent);
                    firstLine = false;
                } else {
                    pedigree.append("\n" + father + " " + dummyParent);
                }
            }
            if (mother != null) {
                if (firstLine) {
                    pedigree.append(mother + " " + dummyParent);
                    firstLine = false;
                } else {
                    pedigree.append("\n" + mother + " " + dummyParent);
                }
            }
            pedigree.append("\n" + dummyParent + " " + individual);
        } else if (!"D-".equals(dummyParent)) {
            if (firstLine) {
                pedigree.append(dummyParent + " " + individual);
                firstLine = false;
            } else {
                pedigree.append("\n" + dummyParent + " " + individual);
            }
        }
    }

    // TODO comment this block to disable circular validations for inbred
    // relatives

    if (!inbreedAllowed) {
        Set<String> circularUIDs = PedigreeUploadValidator.getCircularUIDs(pedigree);
        if (circularUIDs.size() > 0) {
            this.error("Performing this action will create a circular relationship in the pedigree.");
            StringBuffer sb = new StringBuffer(
                    "The proposed action will cause a pedigree cycle involving subjects with UID:");
            boolean first = true;
            for (String uid : circularUIDs) {
                if (first) {
                    sb.append(uid);
                    first = false;
                } else {
                    sb.append(", " + uid);
                }
            }
            sb.append(".");
            this.error(sb.toString());
            target.add(feedbackPanel);
            return;
        }
    }

    // Assign new parent relationships

    SubjectVO criteriaSubjectVo = new SubjectVO();
    criteriaSubjectVo.getLinkSubjectStudy().setStudy(study);
    criteriaSubjectVo.getLinkSubjectStudy().setSubjectUID(subjectUID);
    Collection<SubjectVO> subjects = iArkCommonService.getSubject(criteriaSubjectVo);
    SubjectVO subjectVo = subjects.iterator().next();
    pedigreeRelationship.setSubject(subjectVo.getLinkSubjectStudy());

    criteriaSubjectVo.getLinkSubjectStudy().setSubjectUID(parentUID);
    subjects = iArkCommonService.getSubject(criteriaSubjectVo);
    subjectVo = subjects.iterator().next();
    pedigreeRelationship.setRelative(subjectVo.getLinkSubjectStudy());

    String gender = subject.getLinkSubjectStudy().getPerson().getGenderType().getName();

    List<Relationship> relationships = iArkCommonService.getFamilyRelationships();
    for (Relationship relationship : relationships) {
        if ("Male".equalsIgnoreCase(gender) && "Father".equalsIgnoreCase(relationship.getName())) {
            pedigreeRelationship.setRelationship(relationship);
            break;
        }

        if ("Female".equalsIgnoreCase(gender) && "Mother".equalsIgnoreCase(relationship.getName())) {
            pedigreeRelationship.setRelationship(relationship);
            break;
        }
    }

    iStudyService.create(pedigreeRelationship);
    modalWindow.close(target);
}

From source file:au.org.theark.study.web.component.subject.SubjectContainerPanel.java

License:Open Source License

@SuppressWarnings("unchecked")
protected WebMarkupContainer initialiseSearchResults(AbstractDetailModalWindow modalWindow, final String gender,
        final List<RelationshipVo> relatives) {
    searchResultsPanel = new SearchResultListPanel("searchResults", arkContextMarkup, containerForm,
            arkCrudContainerVO, studyNameMarkup, studyLogoMarkup);
    searchResultsPanel.setOutputMarkupId(true);

    if (sessionStudyId != null) {
        LinkSubjectStudy linkSubjectStudy = new LinkSubjectStudy();
        linkSubjectStudy.setStudy(study);
        // containerForm.getModelObject().setLinkSubjectStudy(linkSubjectStudy);
    }//from w  ww  .j  ava 2 s.c o m

    // Data providor to paginate resultList
    subjectProvider = new ArkDataProvider<SubjectVO, IArkCommonService>(iArkCommonService) {

        private static final long serialVersionUID = 1L;

        private GenderType genderType;

        {
            Collection<GenderType> genderTypes = service.getGenderTypes();
            for (GenderType type : genderTypes) {
                if (gender.equalsIgnoreCase(type.getName())) {
                    this.genderType = type;
                    break;
                }
            }
        }

        public int size() {
            String subjectUID = (String) SecurityUtils.getSubject().getSession()
                    .getAttribute(au.org.theark.core.Constants.SUBJECTUID);
            model.getObject().getRelativeUIDs().add(subjectUID);
            // TODO comment this block to check inbred relatives
            Boolean inbreedAllowed = (Boolean) SecurityUtils.getSubject().getSession()
                    .getAttribute(Constants.INBREED_ALLOWED);
            if (BooleanUtils.isNotTrue(inbreedAllowed)) {
                for (RelationshipVo relationshipVo : relatives) {
                    model.getObject().getRelativeUIDs().add(relationshipVo.getIndividualId());
                }
            } else {
                List<RelationshipVo> childRelatives = iStudyService.getSubjectChildren(subjectUID,
                        sessionStudyId);
                for (RelationshipVo relationshipVo : childRelatives) {
                    model.getObject().getRelativeUIDs().add(relationshipVo.getIndividualId());
                }
            }
            model.getObject().getLinkSubjectStudy().getPerson().setGenderType(genderType);
            return (int) service.getStudySubjectCount(model.getObject());
        }

        public Iterator<SubjectVO> iterator(int first, int count) {
            List<SubjectVO> listSubjects = new ArrayList<SubjectVO>();
            if (isActionPermitted()) {
                model.getObject().getLinkSubjectStudy().getPerson().setGenderType(genderType);
                String subjectUID = (String) SecurityUtils.getSubject().getSession()
                        .getAttribute(au.org.theark.core.Constants.SUBJECTUID);
                model.getObject().getRelativeUIDs().add(subjectUID);
                // TODO comment this block to check inbred relatives
                Boolean inbreedAllowed = (Boolean) SecurityUtils.getSubject().getSession()
                        .getAttribute(Constants.INBREED_ALLOWED);
                if (BooleanUtils.isNotTrue(inbreedAllowed)) {
                    for (RelationshipVo relationshipVo : relatives) {
                        model.getObject().getRelativeUIDs().add(relationshipVo.getIndividualId());
                    }
                } else {
                    List<RelationshipVo> childRelatives = iStudyService.getSubjectChildren(subjectUID,
                            sessionStudyId);
                    for (RelationshipVo relationshipVo : childRelatives) {
                        model.getObject().getRelativeUIDs().add(relationshipVo.getIndividualId());
                    }
                }
                listSubjects = iArkCommonService.searchPageableSubjects(model.getObject(), first, count);
            }
            return listSubjects.iterator();
        }
    };
    subjectProvider.setModel(this.cpModel);

    dataView = searchResultsPanel.buildDataView(subjectProvider, modalWindow, relatives, feedBackPanel);
    dataView.setItemsPerPage(
            iArkCommonService.getUserConfig(au.org.theark.core.Constants.CONFIG_ROWS_PER_PAGE).getIntValue());

    AjaxPagingNavigator pageNavigator = new AjaxPagingNavigator("navigator", dataView) {

        private static final long serialVersionUID = 1L;

        @Override
        protected void onAjaxEvent(AjaxRequestTarget target) {
            target.add(searchResultsPanel);
        }
    };
    resultsWmc.add(pageNavigator);

    List<IColumn<SubjectVO>> columns = new ArrayList<IColumn<SubjectVO>>();
    columns.add(new ExportableTextColumn<SubjectVO>(Model.of("SubjectUID"), "subjectUID"));
    columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Full Name"), "subjectFullName"));
    columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Preferred Name"),
            "linkSubjectStudy.person.preferredName"));
    columns.add(new ExportableDateColumn<SubjectVO>(Model.of("Date Of Birth"),
            "linkSubjectStudy.person.dateOfBirth", au.org.theark.core.Constants.DD_MM_YYYY));
    columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Vital Status"),
            "linkSubjectStudy.person.vitalStatus.name"));
    columns.add(
            new ExportableTextColumn<SubjectVO>(Model.of("Gender"), "linkSubjectStudy.person.genderType.name"));
    columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Subject Status"),
            "linkSubjectStudy.subjectStatus.name"));
    columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Consent Status"),
            "linkSubjectStudy.consentStatus.name"));

    DataTable table = new DataTable("datatable", columns, dataView.getDataProvider(),
            iArkCommonService.getUserConfig(au.org.theark.core.Constants.CONFIG_ROWS_PER_PAGE).getIntValue());
    List<String> headers = new ArrayList<String>(0);
    headers.add("SubjectUID");
    headers.add("Full Name");
    headers.add("Preferred Name");
    headers.add("Date of Birth");
    headers.add("Vital Status");
    headers.add("Gender");
    headers.add("Subject Status");
    headers.add("Consent Status");

    String filename = study.getName() + "_subjects";
    RepeatingView toolbars = new RepeatingView("toolbars");
    ExportToolbar<String> exportToolBar = new ExportToolbar<String>(table, headers, filename);
    toolbars.add(new Component[] { exportToolBar });
    resultsWmc.add(toolbars);

    resultsWmc.add(dataView);
    searchResultsPanel.add(resultsWmc);
    arkCrudContainerVO.getSearchResultPanelContainer().add(searchResultsPanel);
    return arkCrudContainerVO.getSearchResultPanelContainer();
}

From source file:au.org.theark.study.web.component.subjectcustomdata.form.CustomDataEditorForm.java

License:Open Source License

public void onEditSave(AjaxRequestTarget target, Form<?> form) {

    List<SubjectCustomFieldData> errorList = studyService
            .createOrUpdateSubjectCustomFieldData(cpModel.getObject().getCustomFieldDataList());
    if (errorList.size() > 0) {
        for (SubjectCustomFieldData subjectCustomFieldData : errorList) {
            CustomField cf = subjectCustomFieldData.getCustomFieldDisplay().getCustomField();
            String fieldType = cf.getFieldType().getName();
            if (fieldType.equals(au.org.theark.core.web.component.customfield.Constants.DATE_FIELD_TYPE_NAME)) {
                this.error("Unable to save this data: " + cf.getFieldLabel() + " = "
                        + subjectCustomFieldData.getDateDataValue());
            } else {
                this.error("Unable to save this data: " + cf.getFieldLabel() + " = "
                        + subjectCustomFieldData.getTextDataValue());
            }//from w w w. j a  v  a 2  s. co  m
        }
    } else {
        this.info("Successfully saved all edits");
    }
    /*
     * Need to update the dataView, which forces a refresh of the model
     * objects from backend. This is because deleted fields still remain in
     * the model, and are stale objects if we try to use them for future
     * saves.
     */
    target.add(dataViewWMC);
    target.add(feedbackPanel);
}