Download ISAcreator Free Java Code

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ProgramData/files/AEArrayDesigns.txt
ProgramData/images/fragments/analysis.png
ProgramData/images/fragments/analyzed-data.png
ProgramData/images/fragments/animal.png
ProgramData/images/fragments/arachnid.png
ProgramData/images/fragments/bacteria.png
ProgramData/images/fragments/biological.png
ProgramData/images/fragments/cell.png
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ProgramData/images/fragments/chemical-entity.png
ProgramData/images/fragments/data-collection.png
ProgramData/images/fragments/data-processing.png
ProgramData/images/fragments/data.png
ProgramData/images/fragments/device.png
ProgramData/images/fragments/fish.png
ProgramData/images/fragments/fungus.png
ProgramData/images/fragments/in-silico.png
ProgramData/images/fragments/in-vitro.png
ProgramData/images/fragments/in-vivo.png
ProgramData/images/fragments/inputs-and-outputs.png
ProgramData/images/fragments/insect.png
ProgramData/images/fragments/material-amplification.png
ProgramData/images/fragments/material-collection.png
ProgramData/images/fragments/material-combination.png
ProgramData/images/fragments/material-perturbation.png
ProgramData/images/fragments/material-separation.png
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ProgramData/images/fragments/organ.png
ProgramData/images/fragments/organism.png
ProgramData/images/fragments/plant.png
ProgramData/images/fragments/population.png
ProgramData/images/fragments/process.png
ProgramData/images/fragments/processed-data.png
ProgramData/images/fragments/raw-data.png
ProgramData/images/fragments/tissue.png
ProgramData/images/fragments/virus.png
ProgramData/images/glyphs/materials/biological-animalia-cell.png
ProgramData/images/glyphs/materials/biological-animalia-cellular_part.png
ProgramData/images/glyphs/materials/biological-animalia-molecular_part.png
ProgramData/images/glyphs/materials/biological-animalia-organ.png
ProgramData/images/glyphs/materials/biological-animalia-organism.png
ProgramData/images/glyphs/materials/biological-animalia-population.png
ProgramData/images/glyphs/materials/biological-animalia-tissue.png
ProgramData/images/glyphs/materials/biological-animalia.png
ProgramData/images/glyphs/materials/biological-arachnid-cell.png
ProgramData/images/glyphs/materials/biological-arachnid-cellular_part.png
ProgramData/images/glyphs/materials/biological-arachnid-molecular_part.png
ProgramData/images/glyphs/materials/biological-arachnid-organ.png
ProgramData/images/glyphs/materials/biological-arachnid-organism.png
ProgramData/images/glyphs/materials/biological-arachnid-population.png
ProgramData/images/glyphs/materials/biological-arachnid-tissue.png
ProgramData/images/glyphs/materials/biological-arachnid.png
ProgramData/images/glyphs/materials/biological-bacteria-cell.png
ProgramData/images/glyphs/materials/biological-bacteria-cellular_part.png
ProgramData/images/glyphs/materials/biological-bacteria-molecular_part.png
ProgramData/images/glyphs/materials/biological-bacteria-organ.png
ProgramData/images/glyphs/materials/biological-bacteria-organism.png
ProgramData/images/glyphs/materials/biological-bacteria-population.png
ProgramData/images/glyphs/materials/biological-bacteria-tissue.png
ProgramData/images/glyphs/materials/biological-bacteria.png
ProgramData/images/glyphs/materials/biological-fish-cell.png
ProgramData/images/glyphs/materials/biological-fish-cellular_part.png
ProgramData/images/glyphs/materials/biological-fish-molecular_part.png
ProgramData/images/glyphs/materials/biological-fish-organ.png
ProgramData/images/glyphs/materials/biological-fish-organism.png
ProgramData/images/glyphs/materials/biological-fish-population.png
ProgramData/images/glyphs/materials/biological-fish-tissue.png
ProgramData/images/glyphs/materials/biological-fish.png
ProgramData/images/glyphs/materials/biological-fungus-cell.png
ProgramData/images/glyphs/materials/biological-fungus-cellular_part.png
ProgramData/images/glyphs/materials/biological-fungus-molecular_part.png
ProgramData/images/glyphs/materials/biological-fungus-organ.png
ProgramData/images/glyphs/materials/biological-fungus-organism.png
ProgramData/images/glyphs/materials/biological-fungus-population.png
ProgramData/images/glyphs/materials/biological-fungus-tissue.png
ProgramData/images/glyphs/materials/biological-fungus.png
ProgramData/images/glyphs/materials/biological-insect-cell.png
ProgramData/images/glyphs/materials/biological-insect-cellular_part.png
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ProgramData/images/glyphs/materials/biological-insect-organ.png
ProgramData/images/glyphs/materials/biological-insect-organism.png
ProgramData/images/glyphs/materials/biological-insect-population.png
ProgramData/images/glyphs/materials/biological-insect-tissue.png
ProgramData/images/glyphs/materials/biological-insect.png
ProgramData/images/glyphs/materials/biological-plant-cell.png
ProgramData/images/glyphs/materials/biological-plant-cellular_part.png
ProgramData/images/glyphs/materials/biological-plant-molecular_part.png
ProgramData/images/glyphs/materials/biological-plant-organ.png
ProgramData/images/glyphs/materials/biological-plant-organism.png
ProgramData/images/glyphs/materials/biological-plant-population.png
ProgramData/images/glyphs/materials/biological-plant-tissue.png
ProgramData/images/glyphs/materials/biological-plant.png
ProgramData/images/glyphs/materials/biological-virus-cell.png
ProgramData/images/glyphs/materials/biological-virus-cellular_part.png
ProgramData/images/glyphs/materials/biological-virus-molecular_part.png
ProgramData/images/glyphs/materials/biological-virus-organ.png
ProgramData/images/glyphs/materials/biological-virus-organism.png
ProgramData/images/glyphs/materials/biological-virus-population.png
ProgramData/images/glyphs/materials/biological-virus-tissue.png
ProgramData/images/glyphs/materials/biological-virus.png
ProgramData/images/glyphs/materials/biological.png
ProgramData/images/glyphs/materials/chemical_entity.png
ProgramData/images/glyphs/materials/data-analyzed_data.png
ProgramData/images/glyphs/materials/data-processed_data.png
ProgramData/images/glyphs/materials/data-raw_data.png
ProgramData/images/glyphs/materials/device.png
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ProgramData/images/glyphs/processes/in_silico-data_analysis.png
ProgramData/images/glyphs/processes/in_silico-data_preprocessing.png
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ProgramData/images/glyphs/processes/in_vitro-material_amplification-molecular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_amplification-organ.png
ProgramData/images/glyphs/processes/in_vitro-material_amplification-organism.png
ProgramData/images/glyphs/processes/in_vitro-material_amplification-population.png
ProgramData/images/glyphs/processes/in_vitro-material_amplification-tissue.png
ProgramData/images/glyphs/processes/in_vitro-material_collection-cell.png
ProgramData/images/glyphs/processes/in_vitro-material_collection-cellular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_collection-molecular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_collection-organ.png
ProgramData/images/glyphs/processes/in_vitro-material_collection-organism.png
ProgramData/images/glyphs/processes/in_vitro-material_collection-population.png
ProgramData/images/glyphs/processes/in_vitro-material_collection-tissue.png
ProgramData/images/glyphs/processes/in_vitro-material_combination-cell.png
ProgramData/images/glyphs/processes/in_vitro-material_combination-cellular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_combination-molecular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_combination-organ.png
ProgramData/images/glyphs/processes/in_vitro-material_combination-organism.png
ProgramData/images/glyphs/processes/in_vitro-material_combination-population.png
ProgramData/images/glyphs/processes/in_vitro-material_combination-tissue.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-behaviourally_induced_perturbation-cell.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-behaviourally_induced_perturbation-cellular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-behaviourally_induced_perturbation-molecular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-behaviourally_induced_perturbation-organ.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-behaviourally_induced_perturbation-organism.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-behaviourally_induced_perturbation-population.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-behaviourally_induced_perturbation-tissue.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-material_induced_perturbation-cell.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-material_induced_perturbation-cellular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-material_induced_perturbation-molecular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-material_induced_perturbation-organ.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-material_induced_perturbation-organism.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-material_induced_perturbation-population.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-material_induced_perturbation-tissue.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-physically_induced_perturbation-cell.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-physically_induced_perturbation-cellular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-physically_induced_perturbation-molecular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-physically_induced_perturbation-organ.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-physically_induced_perturbation-organism.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-physically_induced_perturbation-population.png
ProgramData/images/glyphs/processes/in_vitro-material_perturbation-physically_induced_perturbation-tissue.png
ProgramData/images/glyphs/processes/in_vitro-material_separation-cell.png
ProgramData/images/glyphs/processes/in_vitro-material_separation-cellular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_separation-molecular_part.png
ProgramData/images/glyphs/processes/in_vitro-material_separation-organ.png
ProgramData/images/glyphs/processes/in_vitro-material_separation-organism.png
ProgramData/images/glyphs/processes/in_vitro-material_separation-population.png
ProgramData/images/glyphs/processes/in_vitro-material_separation-tissue.png
ProgramData/images/glyphs/processes/in_vivo-material_amplification-cell.png
ProgramData/images/glyphs/processes/in_vivo-material_amplification-cellular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_amplification-molecular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_amplification-organ.png
ProgramData/images/glyphs/processes/in_vivo-material_amplification-organism.png
ProgramData/images/glyphs/processes/in_vivo-material_amplification-population.png
ProgramData/images/glyphs/processes/in_vivo-material_amplification-tissue.png
ProgramData/images/glyphs/processes/in_vivo-material_collection-cell.png
ProgramData/images/glyphs/processes/in_vivo-material_collection-cellular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_collection-molecular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_collection-organ.png
ProgramData/images/glyphs/processes/in_vivo-material_collection-organism.png
ProgramData/images/glyphs/processes/in_vivo-material_collection-population.png
ProgramData/images/glyphs/processes/in_vivo-material_collection-tissue.png
ProgramData/images/glyphs/processes/in_vivo-material_combination-cell.png
ProgramData/images/glyphs/processes/in_vivo-material_combination-cellular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_combination-molecular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_combination-organ.png
ProgramData/images/glyphs/processes/in_vivo-material_combination-organism.png
ProgramData/images/glyphs/processes/in_vivo-material_combination-population.png
ProgramData/images/glyphs/processes/in_vivo-material_combination-tissue.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-behaviourally_induced_perturbation-cell.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-behaviourally_induced_perturbation-cellular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-behaviourally_induced_perturbation-molecular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-behaviourally_induced_perturbation-organ.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-behaviourally_induced_perturbation-organism.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-behaviourally_induced_perturbation-population.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-behaviourally_induced_perturbation-tissue.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-material_induced_perturbation-cell.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-material_induced_perturbation-cellular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-material_induced_perturbation-molecular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-material_induced_perturbation-organ.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-material_induced_perturbation-organism.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-material_induced_perturbation-population.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-material_induced_perturbation-tissue.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-physically_induced_perturbation-cell.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-physically_induced_perturbation-cellular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-physically_induced_perturbation-molecular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-physically_induced_perturbation-organ.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-physically_induced_perturbation-organism.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-physically_induced_perturbation-population.png
ProgramData/images/glyphs/processes/in_vivo-material_perturbation-physically_induced_perturbation-tissue.png
ProgramData/images/glyphs/processes/in_vivo-material_separation-cell.png
ProgramData/images/glyphs/processes/in_vivo-material_separation-cellular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_separation-molecular_part.png
ProgramData/images/glyphs/processes/in_vivo-material_separation-organ.png
ProgramData/images/glyphs/processes/in_vivo-material_separation-organism.png
ProgramData/images/glyphs/processes/in_vivo-material_separation-population.png
ProgramData/images/glyphs/processes/in_vivo-material_separation-tissue.png
ProgramData/images/glyphs/processes/process.png
README.md
bundler.py
isatab files/BII-I-1/a_metabolome.txt
isatab files/BII-I-1/a_microarray.txt
isatab files/BII-I-1/a_proteome.txt
isatab files/BII-I-1/a_transcriptome.txt
isatab files/BII-I-1/i_Investigation.txt
isatab files/BII-I-1/s_BII-S-1.txt
isatab files/BII-I-1/s_BII-S-2.txt
package.sh
pom.xml
run_tests.sh
src/log4j.properties
src/main/java/org/isatools/isacreator/api/Authentication.java
src/main/java/org/isatools/isacreator/api/AuthenticationManager.java
src/main/java/org/isatools/isacreator/api/CreateProfile.java
src/main/java/org/isatools/isacreator/api/ImportConfiguration.java
src/main/java/org/isatools/isacreator/api/utils/InvestigationUtils.java
src/main/java/org/isatools/isacreator/api/utils/SpreadsheetUtils.java
src/main/java/org/isatools/isacreator/api/utils/StudyUtils.java
src/main/java/org/isatools/isacreator/archiveoutput/ArchiveOutputError.java
src/main/java/org/isatools/isacreator/archiveoutput/ArchiveOutputUtil.java
src/main/java/org/isatools/isacreator/archiveoutput/ArchiveOutputWindow.java
src/main/java/org/isatools/isacreator/archiveoutput/ArchivingStatistics.java
src/main/java/org/isatools/isacreator/archiveoutput/OutputFailedUI.java
src/main/java/org/isatools/isacreator/archiveoutput/OutputSuccessUI.java
src/main/java/org/isatools/isacreator/archiveoutput/ViewErrorPane.java
src/main/java/org/isatools/isacreator/archiveoutput/ViewErrorUI.java
src/main/java/org/isatools/isacreator/assayselection/AssaySelection.java
src/main/java/org/isatools/isacreator/assayselection/AssaySelectionDialog.java
src/main/java/org/isatools/isacreator/assayselection/AssaySelectionUI.java
src/main/java/org/isatools/isacreator/assayselection/TechnologyListCellRenderer.java
src/main/java/org/isatools/isacreator/assayselection/platform/Platform.java
src/main/java/org/isatools/isacreator/assayselection/platform/PlatformParser.java
src/main/java/org/isatools/isacreator/autofiltercombo/AutoFilterCombo.java
src/main/java/org/isatools/isacreator/autofiltercombo/AutoFilterComboCellEditor.java
src/main/java/org/isatools/isacreator/autofilterfield/AutoCompleteUI.java
src/main/java/org/isatools/isacreator/autofilterfield/DefaultAutoFilterCellEditor.java
src/main/java/org/isatools/isacreator/autofilteringlist/ExtendedJList.java
src/main/java/org/isatools/isacreator/autofilteringlist/FilterContentProvider.java
src/main/java/org/isatools/isacreator/autofilteringlist/FilterField.java
src/main/java/org/isatools/isacreator/autofilteringlist/FilterObserver.java
src/main/java/org/isatools/isacreator/autofilteringlist/FilterSubject.java
src/main/java/org/isatools/isacreator/autofilteringlist/FilterableListCellRenderer.java
src/main/java/org/isatools/isacreator/calendar/CalendarGUI.java
src/main/java/org/isatools/isacreator/calendar/DateCellEditor.java
src/main/java/org/isatools/isacreator/common/ClearFieldUtility.java
src/main/java/org/isatools/isacreator/common/ColumnFilterRenderer.java
src/main/java/org/isatools/isacreator/common/CommonMouseAdapter.java
src/main/java/org/isatools/isacreator/common/ContainerLocationAdaptor.java
src/main/java/org/isatools/isacreator/common/CustomMenuBarUI.java
src/main/java/org/isatools/isacreator/common/CustomMenuItemUI.java
src/main/java/org/isatools/isacreator/common/CustomMenuUI.java
src/main/java/org/isatools/isacreator/common/CustomPopupMenuUI.java
src/main/java/org/isatools/isacreator/common/CustomSeparatorUI.java
src/main/java/org/isatools/isacreator/common/CustomSpreadsheetCellRenderer.java
src/main/java/org/isatools/isacreator/common/CustomTableHeaderRenderer.java
src/main/java/org/isatools/isacreator/common/CustomTextField.java
src/main/java/org/isatools/isacreator/common/DropDownComponent.java
src/main/java/org/isatools/isacreator/common/EncryptedObject.java
src/main/java/org/isatools/isacreator/common/ExcelAdaptor.java
src/main/java/org/isatools/isacreator/common/FileSelectionPanel.java
src/main/java/org/isatools/isacreator/common/Globals.java
src/main/java/org/isatools/isacreator/common/HistoryComponent.java
src/main/java/org/isatools/isacreator/common/ReOrderableJList.java
src/main/java/org/isatools/isacreator/common/ReOrderableListCellRenderer.java
src/main/java/org/isatools/isacreator/common/RegExFormatter.java
src/main/java/org/isatools/isacreator/common/SelectOutputDirectoryDialog.java
src/main/java/org/isatools/isacreator/common/TextEditUtility.java
src/main/java/org/isatools/isacreator/common/UIHelper.java
src/main/java/org/isatools/isacreator/common/Utils.java
src/main/java/org/isatools/isacreator/common/WeakPropertyChangeListener.java
src/main/java/org/isatools/isacreator/common/dialog/ConfirmationDialog.java
src/main/java/org/isatools/isacreator/common/dialog/ISADialog.java
src/main/java/org/isatools/isacreator/common/dialog/WarningDialog.java
src/main/java/org/isatools/isacreator/common/filterableTree/DefaultFilterTreeModel.java
src/main/java/org/isatools/isacreator/common/filterableTree/FilterableJTree.java
src/main/java/org/isatools/isacreator/common/filterableTree/TreeFilterModel.java
src/main/java/org/isatools/isacreator/configuration/AssayTypes.java
src/main/java/org/isatools/isacreator/configuration/Configuration.java
src/main/java/org/isatools/isacreator/configuration/DataTypes.java
src/main/java/org/isatools/isacreator/configuration/DispatchTargets.java
src/main/java/org/isatools/isacreator/configuration/FieldObject.java
src/main/java/org/isatools/isacreator/configuration/MappingObject.java
src/main/java/org/isatools/isacreator/configuration/NumericValidation.java
src/main/java/org/isatools/isacreator/configuration/Ontology.java
src/main/java/org/isatools/isacreator/configuration/OntologyBranch.java
src/main/java/org/isatools/isacreator/configuration/OntologyFormats.java
src/main/java/org/isatools/isacreator/configuration/RecommendedOntology.java
src/main/java/org/isatools/isacreator/configuration/TableConfiguration.java
src/main/java/org/isatools/isacreator/configuration/ValidationTypes.java
src/main/java/org/isatools/isacreator/configuration/io/ConfigXMLParser.java
src/main/java/org/isatools/isacreator/configuration/io/ConfigurationLoadingSource.java
src/main/java/org/isatools/isacreator/effects/AnimatableJFrame.java
src/main/java/org/isatools/isacreator/effects/AnimatingSheet.java
src/main/java/org/isatools/isacreator/effects/CustomSplitPaneDivider.java
src/main/java/org/isatools/isacreator/effects/DraggablePaneMouseInputHandler.java
src/main/java/org/isatools/isacreator/effects/ExpandingPanel.java
src/main/java/org/isatools/isacreator/effects/FooterPanel.java
src/main/java/org/isatools/isacreator/effects/GenericPanel.java
src/main/java/org/isatools/isacreator/effects/GraphicsUtils.java
src/main/java/org/isatools/isacreator/effects/HUDTitleBar.java
src/main/java/org/isatools/isacreator/effects/InfiniteImageProgressPanel.java
src/main/java/org/isatools/isacreator/effects/InfiniteProgressPanel.java
src/main/java/org/isatools/isacreator/effects/SingleSelectionListCellRenderer.java
src/main/java/org/isatools/isacreator/effects/SmallLoader.java
src/main/java/org/isatools/isacreator/effects/TitlePanel.java
src/main/java/org/isatools/isacreator/effects/borders/RoundedBorder.java
src/main/java/org/isatools/isacreator/effects/components/RoundedFormattedTextField.java
src/main/java/org/isatools/isacreator/effects/components/RoundedJPasswordField.java
src/main/java/org/isatools/isacreator/effects/components/RoundedJTextArea.java
src/main/java/org/isatools/isacreator/effects/components/RoundedJTextField.java
src/main/java/org/isatools/isacreator/factorlevelentry/FactorLevelEntryCellEditor.java
src/main/java/org/isatools/isacreator/factorlevelentry/FactorLevelEntryGUI.java
src/main/java/org/isatools/isacreator/factorlevelentry/LevelsAndUnits.java
src/main/java/org/isatools/isacreator/filechooser/ConnectionException.java
src/main/java/org/isatools/isacreator/filechooser/CustomFTPFile.java
src/main/java/org/isatools/isacreator/filechooser/CustomFile.java
src/main/java/org/isatools/isacreator/filechooser/CustomizableListCellRenderer.java
src/main/java/org/isatools/isacreator/filechooser/DirectoryFileList.java
src/main/java/org/isatools/isacreator/filechooser/FTPAuthentication.java
src/main/java/org/isatools/isacreator/filechooser/FTPBrowser.java
src/main/java/org/isatools/isacreator/filechooser/FTPLocationListCellRenderer.java
src/main/java/org/isatools/isacreator/filechooser/FTPManager.java
src/main/java/org/isatools/isacreator/filechooser/FileBrowser.java
src/main/java/org/isatools/isacreator/filechooser/FileBrowserTreeNode.java
src/main/java/org/isatools/isacreator/filechooser/FileChooserFile.java
src/main/java/org/isatools/isacreator/filechooser/FileChooserUI.java
src/main/java/org/isatools/isacreator/filechooser/FileImage.java
src/main/java/org/isatools/isacreator/filechooser/FileSelectCellEditor.java
src/main/java/org/isatools/isacreator/filechooser/FileSystemTreeCellRenderer.java
src/main/java/org/isatools/isacreator/filechooser/LocalBrowser.java
src/main/java/org/isatools/isacreator/filterablelistselector/FilterableListCellEditor.java
src/main/java/org/isatools/isacreator/filterablelistselector/FilterableListSelector.java
src/main/java/org/isatools/isacreator/formatmappingutility/exceptions/MultipleExtensionsException.java
src/main/java/org/isatools/isacreator/formatmappingutility/exceptions/NoAvailableLoaderException.java
src/main/java/org/isatools/isacreator/formatmappingutility/io/ISAField.java
src/main/java/org/isatools/isacreator/formatmappingutility/io/ISAFieldMapping.java
src/main/java/org/isatools/isacreator/formatmappingutility/io/MappingXMLCreator.java
src/main/java/org/isatools/isacreator/formatmappingutility/io/MappingXMLLoader.java
src/main/java/org/isatools/isacreator/formatmappingutility/io/SavedMappings.java
src/main/java/org/isatools/isacreator/formatmappingutility/loader/CSVFileLoader.java
src/main/java/org/isatools/isacreator/formatmappingutility/loader/ExcelFileLoader.java
src/main/java/org/isatools/isacreator/formatmappingutility/loader/FileLoader.java
src/main/java/org/isatools/isacreator/formatmappingutility/loader/Loader.java
src/main/java/org/isatools/isacreator/formatmappingutility/logic/MappingLogic.java
src/main/java/org/isatools/isacreator/formatmappingutility/logic/MappingTypes.java
src/main/java/org/isatools/isacreator/formatmappingutility/renderers/MappingSelectionTreeCellRenderer.java
src/main/java/org/isatools/isacreator/formatmappingutility/tablebrowser/IncomingFileBrowser.java
src/main/java/org/isatools/isacreator/formatmappingutility/tablebrowser/IncomingFileDataCellRenderer.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/ErrorDisplay.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/GeneralAttributeEntry.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/GenerateMappingView.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/GenericFieldEntry.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/MappedElement.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/MappingBuilderUI.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/MappingChoice.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/MappingEntryGUI.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/MappingField.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/MappingInformation.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/MappingUtilView.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/NormalFieldEntry.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/ProtocolFieldEntry.java
src/main/java/org/isatools/isacreator/formatmappingutility/ui/Toolbox.java
src/main/java/org/isatools/isacreator/formatmappingutility/utils/TableReferenceObjectWrapper.java
src/main/java/org/isatools/isacreator/ftpupload/FTPClient.java
src/main/java/org/isatools/isacreator/ftpupload/FTPupload.java
src/main/java/org/isatools/isacreator/gs/GSActivator.java
src/main/java/org/isatools/isacreator/gs/GSDataManager.java
src/main/java/org/isatools/isacreator/gs/GSIdentityManager.java
src/main/java/org/isatools/isacreator/gs/GSLocalFilesManager.java
src/main/java/org/isatools/isacreator/gs/GSSaveAction.java
src/main/java/org/isatools/isacreator/gs/gui/GSAuthenticationMenu.java
src/main/java/org/isatools/isacreator/gs/gui/GSFileChooser.java
src/main/java/org/isatools/isacreator/gs/gui/GSFileMetadataComparator.java
src/main/java/org/isatools/isacreator/gs/gui/GSFileMetadataTreeNode.java
src/main/java/org/isatools/isacreator/gs/gui/GSImportFilesMenu.java
src/main/java/org/isatools/isacreator/gs/gui/GSRegistrationMenu.java
src/main/java/org/isatools/isacreator/gs/gui/GSSavingWindow.java
src/main/java/org/isatools/isacreator/gs/gui/GSTree.java
src/main/java/org/isatools/isacreator/gs/gui/RootTreeNode.java
src/main/java/org/isatools/isacreator/gui/AboutPanel.java
src/main/java/org/isatools/isacreator/gui/AbstractDataEntryEnvironment.java
src/main/java/org/isatools/isacreator/gui/AddStudyDialog.java
src/main/java/org/isatools/isacreator/gui/AssaySpreadsheet.java
src/main/java/org/isatools/isacreator/gui/CustomTreeRenderer.java
src/main/java/org/isatools/isacreator/gui/DataEntryEnvironment.java
src/main/java/org/isatools/isacreator/gui/DataEntryForm.java
src/main/java/org/isatools/isacreator/gui/ExtendedJTable.java
src/main/java/org/isatools/isacreator/gui/HistoricalSelectionGUI.java
src/main/java/org/isatools/isacreator/gui/ISAOverviewTreeRenderer.java
src/main/java/org/isatools/isacreator/gui/ISAcreator.java
src/main/java/org/isatools/isacreator/gui/ISAcreatorBackground.java
src/main/java/org/isatools/isacreator/gui/ISAcreatorTitlePanel.java
src/main/java/org/isatools/isacreator/gui/InvestigationDataEntry.java
src/main/java/org/isatools/isacreator/gui/RowEditor.java
src/main/java/org/isatools/isacreator/gui/SaveAsDialog.java
src/main/java/org/isatools/isacreator/gui/StudyDataEntry.java
src/main/java/org/isatools/isacreator/gui/StudySubData.java
src/main/java/org/isatools/isacreator/gui/SubFormLockedCellRenderer.java
src/main/java/org/isatools/isacreator/gui/TermSubstitutionGUI.java
src/main/java/org/isatools/isacreator/gui/formelements/AssaySubForm.java
src/main/java/org/isatools/isacreator/gui/formelements/ContactSubForm.java
src/main/java/org/isatools/isacreator/gui/formelements/FactorSubForm.java
src/main/java/org/isatools/isacreator/gui/formelements/FieldTypes.java
src/main/java/org/isatools/isacreator/gui/formelements/HistoricalSelectionEnabledSubForm.java
src/main/java/org/isatools/isacreator/gui/formelements/ProtocolSubForm.java
src/main/java/org/isatools/isacreator/gui/formelements/PublicationSubForm.java
src/main/java/org/isatools/isacreator/gui/formelements/StudyDesignSubForm.java
src/main/java/org/isatools/isacreator/gui/formelements/SubForm.java
src/main/java/org/isatools/isacreator/gui/formelements/SubFormCellRenderer.java
src/main/java/org/isatools/isacreator/gui/formelements/SubFormField.java
src/main/java/org/isatools/isacreator/gui/formelements/SubFormHeaderRenderer.java
src/main/java/org/isatools/isacreator/gui/formelements/assay/AssayInformationPanel.java
src/main/java/org/isatools/isacreator/gui/formelements/assay/AssayInformationWriter.java
src/main/java/org/isatools/isacreator/gui/help/AddStudyPage.java
src/main/java/org/isatools/isacreator/gui/help/AnatomyPage.java
src/main/java/org/isatools/isacreator/gui/help/Controller.java
src/main/java/org/isatools/isacreator/gui/io/exportisa/OutputISAFilesFromGUI.java
src/main/java/org/isatools/isacreator/gui/io/importisa/ISAtabFilesImporterFromGUI.java
src/main/java/org/isatools/isacreator/gui/listeners/propertychange/DateChangedCancelledEvent.java
src/main/java/org/isatools/isacreator/gui/listeners/propertychange/DateChangedEvent.java
src/main/java/org/isatools/isacreator/gui/listeners/propertychange/OntologySelectedEvent.java
src/main/java/org/isatools/isacreator/gui/listeners/propertychange/OntologySelectionCancelledEvent.java
src/main/java/org/isatools/isacreator/gui/menu/AbstractImportFilesMenu.java
src/main/java/org/isatools/isacreator/gui/menu/AuthenticationMenu.java
src/main/java/org/isatools/isacreator/gui/menu/CreateISATABMenu.java
src/main/java/org/isatools/isacreator/gui/menu/CreateProfileMenu.java
src/main/java/org/isatools/isacreator/gui/menu/ErrorMenu.java
src/main/java/org/isatools/isacreator/gui/menu/ErrorReportWrapper.java
src/main/java/org/isatools/isacreator/gui/menu/ExitConfirmationPanel.java
src/main/java/org/isatools/isacreator/gui/menu/ISAcreatorMenu.java
src/main/java/org/isatools/isacreator/gui/menu/ImportConfigurationMenu.java
src/main/java/org/isatools/isacreator/gui/menu/ImportFilesListCellRenderer.java
src/main/java/org/isatools/isacreator/gui/menu/ImportFilesMenu.java
src/main/java/org/isatools/isacreator/gui/menu/MainMenu.java
src/main/java/org/isatools/isacreator/gui/menu/MenuUIComponent.java
src/main/java/org/isatools/isacreator/gui/menu/UnSupportedJava.java
src/main/java/org/isatools/isacreator/gui/menu/UserCreationMenu.java
src/main/java/org/isatools/isacreator/gui/modeselection/Mode.java
src/main/java/org/isatools/isacreator/gui/modeselection/ModeSelector.java
src/main/java/org/isatools/isacreator/gui/reference/DataEntryReferenceObject.java
src/main/java/org/isatools/isacreator/io/CustomizableFileFilter.java
src/main/java/org/isatools/isacreator/io/IOUtils.java
src/main/java/org/isatools/isacreator/io/OntologyLibrary.java
src/main/java/org/isatools/isacreator/io/UserProfile.java
src/main/java/org/isatools/isacreator/io/UserProfileManager.java
src/main/java/org/isatools/isacreator/io/exportisa/ISAFileOutput.java
src/main/java/org/isatools/isacreator/io/exportisa/OutputISAFiles.java
src/main/java/org/isatools/isacreator/io/exportisa/exportadaptors/ISASectionExportAdaptor.java
src/main/java/org/isatools/isacreator/io/importisa/ISAtabFilesImporter.java
src/main/java/org/isatools/isacreator/io/importisa/ISAtabImporter.java
src/main/java/org/isatools/isacreator/io/importisa/InvestigationImport.java
src/main/java/org/isatools/isacreator/io/importisa/SpreadsheetImport.java
src/main/java/org/isatools/isacreator/io/importisa/StructureToInvestigationMapper.java
src/main/java/org/isatools/isacreator/io/importisa/errorhandling/exceptions/MalformedInvestigationException.java
src/main/java/org/isatools/isacreator/io/importisa/errorhandling/exceptions/MalformedOntologyTermException.java
src/main/java/org/isatools/isacreator/io/importisa/investigationproperties/InvestigationFileSection.java
src/main/java/org/isatools/isacreator/io/importisa/investigationproperties/InvestigationSection.java
src/main/java/org/isatools/isacreator/io/importisa/investigationproperties/InvestigationStructureLoader.java
src/main/java/org/isatools/isacreator/io/osgi/OSGiDependencyImport.java
src/main/java/org/isatools/isacreator/launch/ConfigurationUtil.java
src/main/java/org/isatools/isacreator/launch/ISAcreatorActivator.java
src/main/java/org/isatools/isacreator/launch/ISAcreatorApplication.java
src/main/java/org/isatools/isacreator/launch/ISAcreatorCLArgs.java
src/main/java/org/isatools/isacreator/launch/ISAcreatorGUIProperties.java
src/main/java/org/isatools/isacreator/longtexteditor/TextCellEditor.java
src/main/java/org/isatools/isacreator/longtexteditor/TextEditingComponent.java
src/main/java/org/isatools/isacreator/longtexteditor/TextEditor.java
src/main/java/org/isatools/isacreator/managers/ApplicationManager.java
src/main/java/org/isatools/isacreator/managers/ConfigurationManager.java
src/main/java/org/isatools/isacreator/mergeutil/MergeFilesUI.java
src/main/java/org/isatools/isacreator/mergeutil/Utils.java
src/main/java/org/isatools/isacreator/model/Assay.java
src/main/java/org/isatools/isacreator/model/Contact.java
src/main/java/org/isatools/isacreator/model/Factor.java
src/main/java/org/isatools/isacreator/model/GeneralFieldTypes.java
src/main/java/org/isatools/isacreator/model/ISASection.java
src/main/java/org/isatools/isacreator/model/Investigation.java
src/main/java/org/isatools/isacreator/model/InvestigationContact.java
src/main/java/org/isatools/isacreator/model/InvestigationPublication.java
src/main/java/org/isatools/isacreator/model/Protocol.java
src/main/java/org/isatools/isacreator/model/Publication.java
src/main/java/org/isatools/isacreator/model/Study.java
src/main/java/org/isatools/isacreator/model/StudyContact.java
src/main/java/org/isatools/isacreator/model/StudyDesign.java
src/main/java/org/isatools/isacreator/model/StudyPublication.java
src/main/java/org/isatools/isacreator/ontologiser/adaptors/ContentAdaptor.java
src/main/java/org/isatools/isacreator/ontologiser/adaptors/InvestigationAdaptor.java
src/main/java/org/isatools/isacreator/ontologiser/adaptors/SpreadsheetAdaptor.java
src/main/java/org/isatools/isacreator/ontologiser/adaptors/StringBlockAdaptor.java
src/main/java/org/isatools/isacreator/ontologiser/adaptors/StudyAdaptor.java
src/main/java/org/isatools/isacreator/ontologiser/logic/ScoreAnalysisUtility.java
src/main/java/org/isatools/isacreator/ontologiser/logic/impl/AnnotatorSearchClient.java
src/main/java/org/isatools/isacreator/ontologiser/model/OntologisedResult.java
src/main/java/org/isatools/isacreator/ontologiser/model/OntologiserListItems.java
src/main/java/org/isatools/isacreator/ontologiser/model/SuggestedAnnotation.java
src/main/java/org/isatools/isacreator/ontologiser/ui/OntologiserAnnotationPane.java
src/main/java/org/isatools/isacreator/ontologiser/ui/OntologiserUI.java
src/main/java/org/isatools/isacreator/ontologiser/ui/OntologyHelpPane.java
src/main/java/org/isatools/isacreator/ontologiser/ui/listrenderer/CheckedCellImage.java
src/main/java/org/isatools/isacreator/ontologiser/ui/listrenderer/OntologyAssignedListRenderer.java
src/main/java/org/isatools/isacreator/ontologiser/ui/listrenderer/ScoringConfidenceListRenderer.java
src/main/java/org/isatools/isacreator/ontologybrowsingutils/OntologyTreeCreator.java
src/main/java/org/isatools/isacreator/ontologybrowsingutils/OntologyTreeItem.java
src/main/java/org/isatools/isacreator/ontologybrowsingutils/TreeObserver.java
src/main/java/org/isatools/isacreator/ontologybrowsingutils/TreeSubject.java
src/main/java/org/isatools/isacreator/ontologybrowsingutils/WSOntologyTreeCreator.java
src/main/java/org/isatools/isacreator/ontologymanager/BioPortalClient.java
src/main/java/org/isatools/isacreator/ontologymanager/OLSClient.java
src/main/java/org/isatools/isacreator/ontologymanager/OntologyManager.java
src/main/java/org/isatools/isacreator/ontologymanager/OntologyQueryAdapter.java
src/main/java/org/isatools/isacreator/ontologymanager/OntologyService.java
src/main/java/org/isatools/isacreator/ontologymanager/OntologySourceRefObject.java
src/main/java/org/isatools/isacreator/ontologymanager/ResultCache.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/io/AcceptedOntologies.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/io/AcceptedOntologiesLoader.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/io/AcceptedOntology.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/model/AnnotatorResult.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/model/BioPortalSearchResult.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/model/OntologyPortal.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/model/ScoringConfidence.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/utils/BioPortalXMLModifier.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/utils/Modifier.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/utils/NCIThesaurusModifier.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/utils/OntologyTermHarvestingPool.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/xmlresulthandlers/BioPortalAnnotatorResultHandler.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/xmlresulthandlers/BioPortalClassBeanResultHandler.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/xmlresulthandlers/BioPortalOntologyListResultHandler.java
src/main/java/org/isatools/isacreator/ontologymanager/bioportal/xmlresulthandlers/BioPortalSearchBeanResultHandler.java
src/main/java/org/isatools/isacreator/ontologymanager/common/OntologyTerm.java
src/main/java/org/isatools/isacreator/ontologymanager/utils/OntologyUtils.java
src/main/java/org/isatools/isacreator/ontologyselectiontool/CustomTreeRenderer.java
src/main/java/org/isatools/isacreator/ontologyselectiontool/FilterableOntologyTreeModel.java
src/main/java/org/isatools/isacreator/ontologyselectiontool/OntologyCellEditor.java
src/main/java/org/isatools/isacreator/ontologyselectiontool/OntologySelectionTool.java
src/main/java/org/isatools/isacreator/ontologyselectiontool/OntologySelector.java
src/main/java/org/isatools/isacreator/ontologyselectiontool/ViewTermDefinitionUI.java
src/main/java/org/isatools/isacreator/optionselector/OptionGroup.java
src/main/java/org/isatools/isacreator/optionselector/OptionItem.java
src/main/java/org/isatools/isacreator/plugins/AbstractPluginSpreadsheetWidget.java
src/main/java/org/isatools/isacreator/plugins/DefaultOntologySearchWidget.java
src/main/java/org/isatools/isacreator/plugins/DefaultPluginMenu.java
src/main/java/org/isatools/isacreator/plugins/DefaultSpreadsheetWidget.java
src/main/java/org/isatools/isacreator/plugins/DefaultWindowListener.java
src/main/java/org/isatools/isacreator/plugins/MenuPluginTracker.java
src/main/java/org/isatools/isacreator/plugins/OntologyPluginTracker.java
src/main/java/org/isatools/isacreator/plugins/SpreadsheetPluginTracker.java
src/main/java/org/isatools/isacreator/plugins/host/service/PluginMenu.java
src/main/java/org/isatools/isacreator/plugins/host/service/PluginOntologyCVSearch.java
src/main/java/org/isatools/isacreator/plugins/host/service/PluginSpreadsheetWidget.java
src/main/java/org/isatools/isacreator/plugins/registries/OntologySearchPluginRegistry.java
src/main/java/org/isatools/isacreator/plugins/registries/SpreadsheetPluginRegistry.java
src/main/java/org/isatools/isacreator/protocolselector/ProtocolSelectorCellEditor.java
src/main/java/org/isatools/isacreator/protocolselector/ProtocolSelectorListCellRenderer.java
src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java
src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreResult.java
src/main/java/org/isatools/isacreator/publicationlocator/NoPublicationFoundException.java
src/main/java/org/isatools/isacreator/publicationlocator/PublicationLocatorUI.java
src/main/java/org/isatools/isacreator/publicationlocator/SearchOption.java
src/main/java/org/isatools/isacreator/publicationlocator/SearchResultPane.java
src/main/java/org/isatools/isacreator/publicationlocator/Utils.java
src/main/java/org/isatools/isacreator/qrcode/html/HTMLCreator.java
src/main/java/org/isatools/isacreator/qrcode/logic/CodeGenerator.java
src/main/java/org/isatools/isacreator/qrcode/logic/FileFormat.java
src/main/java/org/isatools/isacreator/qrcode/logic/ImageSize.java
src/main/java/org/isatools/isacreator/qrcode/logic/MatrixToImageWriter.java
src/main/java/org/isatools/isacreator/qrcode/logic/QRCode.java
src/main/java/org/isatools/isacreator/qrcode/ui/FilterableQRCodeViewTreeModel.java
src/main/java/org/isatools/isacreator/qrcode/ui/QRCodeBuilderPane.java
src/main/java/org/isatools/isacreator/qrcode/ui/QRCodeDetailedView.java
src/main/java/org/isatools/isacreator/qrcode/ui/QRCodeGeneratorUI.java
src/main/java/org/isatools/isacreator/qrcode/ui/QRCodeListItem.java
src/main/java/org/isatools/isacreator/qrcode/ui/QRCodeTreeRenderer.java
src/main/java/org/isatools/isacreator/qrcode/ui/QRCodeViewerPane.java
src/main/java/org/isatools/isacreator/qrcode/ui/QRHelpPane.java
src/main/java/org/isatools/isacreator/qrcode/utils/QRAPIHook.java
src/main/java/org/isatools/isacreator/sampleselection/SampleInformation.java
src/main/java/org/isatools/isacreator/sampleselection/SampleSelectionListCellRenderer.java
src/main/java/org/isatools/isacreator/sampleselection/SampleSelectorCellEditor.java
src/main/java/org/isatools/isacreator/sampleselection/TestAutofilter.java
src/main/java/org/isatools/isacreator/settings/ContactEditor.java
src/main/java/org/isatools/isacreator/settings/DataLocationSettings.java
src/main/java/org/isatools/isacreator/settings/ElementEditor.java
src/main/java/org/isatools/isacreator/settings/GeneralViewerEditor.java
src/main/java/org/isatools/isacreator/settings/HTTPProxySettings.java
src/main/java/org/isatools/isacreator/settings/ISAcreatorProperties.java
src/main/java/org/isatools/isacreator/settings/OntologySettings.java
src/main/java/org/isatools/isacreator/settings/ProtocolEditor.java
src/main/java/org/isatools/isacreator/settings/SettingsScreen.java
src/main/java/org/isatools/isacreator/settings/SettingsUtil.java
src/main/java/org/isatools/isacreator/settings/ValidationSettings.java
src/main/java/org/isatools/isacreator/spreadsheet/AddColumnGUI.java
src/main/java/org/isatools/isacreator/spreadsheet/AddMultipleRowsGUI.java
src/main/java/org/isatools/isacreator/spreadsheet/ColumnGroupCellRenderer.java
src/main/java/org/isatools/isacreator/spreadsheet/CopyPasteAdaptor.java
src/main/java/org/isatools/isacreator/spreadsheet/CopyPasteObserver.java
src/main/java/org/isatools/isacreator/spreadsheet/CopyPasteSubject.java
src/main/java/org/isatools/isacreator/spreadsheet/CustomRowRenderer.java
src/main/java/org/isatools/isacreator/spreadsheet/CustomTable.java
src/main/java/org/isatools/isacreator/spreadsheet/DateEditor.java
src/main/java/org/isatools/isacreator/spreadsheet/DragBorder.java
src/main/java/org/isatools/isacreator/spreadsheet/FileLocationMapperUtil.java
src/main/java/org/isatools/isacreator/spreadsheet/IncorrectColumnOrderGUI.java
src/main/java/org/isatools/isacreator/spreadsheet/MultipleSortGUI.java
src/main/java/org/isatools/isacreator/spreadsheet/NumberEditor.java
src/main/java/org/isatools/isacreator/spreadsheet/NumberValidation.java
src/main/java/org/isatools/isacreator/spreadsheet/RowNumberCellRenderer.java
src/main/java/org/isatools/isacreator/spreadsheet/Spreadsheet.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetCell.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetCellEditor.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetCellPoint.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetCellRange.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetCellRenderer.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetClipboard.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetColumnRenderer.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetEvent.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetFunctions.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetHistory.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetModel.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetPopupMenus.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetSelectionEvent.java
src/main/java/org/isatools/isacreator/spreadsheet/SpreadsheetSelectionListener.java
src/main/java/org/isatools/isacreator/spreadsheet/StringEditor.java
src/main/java/org/isatools/isacreator/spreadsheet/StringValidation.java
src/main/java/org/isatools/isacreator/spreadsheet/Utils.java
src/main/java/org/isatools/isacreator/spreadsheet/ValidationObject.java
src/main/java/org/isatools/isacreator/spreadsheet/model/ReferenceData.java
src/main/java/org/isatools/isacreator/spreadsheet/model/TableReferenceObject.java
src/main/java/org/isatools/isacreator/spreadsheet/transposedview/SpreadsheetConverter.java
src/main/java/org/isatools/isacreator/spreadsheet/transposedview/SubformConverter.java
src/main/java/org/isatools/isacreator/spreadsheet/transposedview/TransposedSpreadsheetModel.java
src/main/java/org/isatools/isacreator/spreadsheet/transposedview/TransposedSpreadsheetView.java
src/main/java/org/isatools/isacreator/spreadsheet/transposedview/TransposedSubForm.java
src/main/java/org/isatools/isacreator/spreadsheet/utils/TableDataStructureCreator.java
src/main/java/org/isatools/isacreator/utils/CheckingModule.java
src/main/java/org/isatools/isacreator/utils/ColumnDuplicationModule.java
src/main/java/org/isatools/isacreator/utils/ColumnOrderModule.java
src/main/java/org/isatools/isacreator/utils/GeneralUtils.java
src/main/java/org/isatools/isacreator/utils/Imaging.java
src/main/java/org/isatools/isacreator/utils/IncorrectColumnPositioning.java
src/main/java/org/isatools/isacreator/utils/PropertyFileIO.java
src/main/java/org/isatools/isacreator/utils/StringProcessing.java
src/main/java/org/isatools/isacreator/utils/TableConsistencyChecker.java
src/main/java/org/isatools/isacreator/utils/WorkingScreen.java
src/main/java/org/isatools/isacreator/utils/datastructures/CollectionUtils.java
src/main/java/org/isatools/isacreator/utils/datastructures/SetUtils.java
src/main/java/org/isatools/isacreator/validateconvert/ui/ConversionErrorUI.java
src/main/java/org/isatools/isacreator/validateconvert/ui/ConversionTarget.java
src/main/java/org/isatools/isacreator/validateconvert/ui/ConversionTargetInformationPanel.java
src/main/java/org/isatools/isacreator/validateconvert/ui/ConvertUI.java
src/main/java/org/isatools/isacreator/validateconvert/ui/OperatingMode.java
src/main/java/org/isatools/isacreator/validateconvert/ui/ValidateUI.java
src/main/java/org/isatools/isacreator/validateconvert/ui/ValidationUtils.java
src/main/java/org/isatools/isacreator/visualization/AssayAnalysis.java
src/main/java/org/isatools/isacreator/visualization/AssayInfoPanel.java
src/main/java/org/isatools/isacreator/visualization/ExperimentVisualization.java
src/main/java/org/isatools/isacreator/visualization/GenerateView.java
src/main/java/org/isatools/isacreator/visualization/InvestigationInfoPanel.java
src/main/java/org/isatools/isacreator/visualization/StudyInfoPanel.java
src/main/java/org/isatools/isacreator/visualization/TableGroupInfo.java
src/main/java/org/isatools/isacreator/visualization/TreatmentGroupViewer.java
src/main/java/org/isatools/isacreator/visualization/tree/TreeView.java
src/main/java/org/isatools/isacreator/wizard/AddAssayPane.java
src/main/java/org/isatools/isacreator/wizard/BackgroundPanel.java
src/main/java/org/isatools/isacreator/wizard/CheckableJList.java
src/main/java/org/isatools/isacreator/wizard/CreationAlgorithm.java
src/main/java/org/isatools/isacreator/wizard/ExtractDetailsCapture.java
src/main/java/org/isatools/isacreator/wizard/GeneralCreationAlgorithm.java
src/main/java/org/isatools/isacreator/wizard/GeneratedSampleDetails.java
src/main/java/org/isatools/isacreator/wizard/LabelCapture.java
src/main/java/org/isatools/isacreator/wizard/MicroarrayCreationAlgorithm.java
src/main/java/org/isatools/isacreator/wizard/PropertyType.java
src/main/java/org/isatools/isacreator/wizard/PropertyValue.java
src/main/java/org/isatools/isacreator/wizard/StudySampleCreationAlgorithm.java
src/main/java/org/isatools/isacreator/wizard/TreatmentGroupSelector.java
src/main/java/org/isatools/isacreator/wizard/TreatmentReplicate.java
src/main/java/org/isatools/isacreator/wizard/Utils.java
src/main/java/org/isatools/isacreator/wizard/Wizard.java
src/main/resources/META-INF/MANIFEST.MF
src/main/resources/defaults/assayinfo/platforms.xml
src/main/resources/defaults/bioportal-accepted-ontologies.xml
src/main/resources/defaults/investigation.xml
src/main/resources/defaults/investigationStructure.xml
src/main/resources/defaults/osgi-framework-packages.xml
src/main/resources/defaults/settings/defaultsettings.properties
src/main/resources/dependency-injections/archiveoutput-package.properties
src/main/resources/dependency-injections/arraydesignbrowser-package.properties
src/main/resources/dependency-injections/assayselection-package.properties
src/main/resources/dependency-injections/autofilterfield-package.properties
src/main/resources/dependency-injections/autofilteringlist-package.properties
src/main/resources/dependency-injections/calendar-package.properties
src/main/resources/dependency-injections/common-package.properties
src/main/resources/dependency-injections/effects-package.properties
src/main/resources/dependency-injections/factorlevelentry-package.properties
src/main/resources/dependency-injections/filechooser-package.properties
src/main/resources/dependency-injections/formatmappingutility-package.properties
src/main/resources/dependency-injections/gui-package.properties
src/main/resources/dependency-injections/longtexteditor-package.properties
src/main/resources/dependency-injections/mergeutil-package.properties
src/main/resources/dependency-injections/ontologiser-generator-package.properties
src/main/resources/dependency-injections/ontologyselectiontool-package.properties
src/main/resources/dependency-injections/optionselector-package.properties
src/main/resources/dependency-injections/publicationlocator-package.properties
src/main/resources/dependency-injections/qrcode-generator-package.properties
src/main/resources/dependency-injections/settings-package.properties
src/main/resources/dependency-injections/spreadsheet-package.properties
src/main/resources/dependency-injections/utils-package.properties
src/main/resources/dependency-injections/validator-package.properties
src/main/resources/dependency-injections/wizard-package.properties
src/main/resources/html-resources/qrcode/qrcode_view_template.html
src/main/resources/html-resources/qrcode/table_html.html
src/main/resources/images/assay-selection/add-assay-active.png
src/main/resources/images/assay-selection/add-assay-active_over.png
src/main/resources/images/assay-selection/add-assay-inactive.png
src/main/resources/images/assay-selection/flowcyt-selected.png
src/main/resources/images/assay-selection/flowcyt-unselected.png
src/main/resources/images/assay-selection/gelelec-selected.png
src/main/resources/images/assay-selection/gelelec-unselected.png
src/main/resources/images/assay-selection/microarray-selected.png
src/main/resources/images/assay-selection/microarray-unselected.png
src/main/resources/images/assay-selection/nmrms-selected.png
src/main/resources/images/assay-selection/nmrms-unselected.png
src/main/resources/images/assay-selection/other-selected.png
src/main/resources/images/assay-selection/other-unselected.png
src/main/resources/images/assay-selection/remove-assay-active.png
src/main/resources/images/assay-selection/remove-assay-active_over.png
src/main/resources/images/assay-selection/remove-assay-inactive.png
src/main/resources/images/assay-selection/sequencing-selected.png
src/main/resources/images/assay-selection/sequencing-unselected.png
src/main/resources/images/autofilteringlist/addRecordToSubform.png
src/main/resources/images/autofilteringlist/default_list_item.png
src/main/resources/images/common/are_you_sure.png
src/main/resources/images/common/are_you_sure_no.png
src/main/resources/images/common/are_you_sure_no_over.png
src/main/resources/images/common/are_you_sure_yes.png
src/main/resources/images/common/are_you_sure_yes_over.png
src/main/resources/images/common/back.png
src/main/resources/images/common/back_over.png
src/main/resources/images/common/calendar_form_selection_icon.png
src/main/resources/images/common/calendar_form_selection_icon_over.png
src/main/resources/images/common/cancel.png
src/main/resources/images/common/cancel_over.png
src/main/resources/images/common/close.png
src/main/resources/images/common/close_over.png
src/main/resources/images/common/column_header_selected.png
src/main/resources/images/common/column_header_unselected.png
src/main/resources/images/common/continue.png
src/main/resources/images/common/continue_over.png
src/main/resources/images/common/correct.png
src/main/resources/images/common/customfields/left_field.png
src/main/resources/images/common/customfields/right_field.png
src/main/resources/images/common/general_export.png
src/main/resources/images/common/incorrect.png
src/main/resources/images/common/next.png
src/main/resources/images/common/next_over.png
src/main/resources/images/common/node_closed.png
src/main/resources/images/common/node_open.png
src/main/resources/images/common/ok.png
src/main/resources/images/common/ok_over.png
src/main/resources/images/common/ontology_form_selection_icon.png
src/main/resources/images/common/ontology_form_selection_icon_over.png
src/main/resources/images/common/table_browser_icon.png
src/main/resources/images/common/table_browser_icon_over.png
src/main/resources/images/common/textEdit.png
src/main/resources/images/common/textEditOver.png
src/main/resources/images/common/warning.png
src/main/resources/images/effects/abstract_logo.png
src/main/resources/images/effects/isacreator_logo.png
src/main/resources/images/effects/isacreator_release_note.png
src/main/resources/images/effects/list_image.png
src/main/resources/images/effects/mapping_tool_logo.png
src/main/resources/images/effects/resize_active.png
src/main/resources/images/effects/split_pane_icon.png
src/main/resources/images/effects/split_pane_separator.png
src/main/resources/images/effects/wizard_logo.png
src/main/resources/images/factorlevelselector/addrow.png
src/main/resources/images/factorlevelselector/addrow_over.png
src/main/resources/images/factorlevelselector/factorlevelheader.png
src/main/resources/images/factorlevelselector/removerow.png
src/main/resources/images/factorlevelselector/removerow_over.png
src/main/resources/images/filechooser/closed_directory.png
src/main/resources/images/filechooser/closed_group_item.png
src/main/resources/images/filechooser/connect.png
src/main/resources/images/filechooser/delete.png
src/main/resources/images/filechooser/delete_over.png
src/main/resources/images/filechooser/dir_item.png
src/main/resources/images/filechooser/down.png
src/main/resources/images/filechooser/down_over.png
src/main/resources/images/filechooser/generic_file.png
src/main/resources/images/filechooser/home_directory.png
src/main/resources/images/filechooser/home_directory_over.png
src/main/resources/images/filechooser/image_file_icon.png
src/main/resources/images/filechooser/local_file_system.png
src/main/resources/images/filechooser/open_directory.png
src/main/resources/images/filechooser/opened_group_item.png
src/main/resources/images/filechooser/paper_clip.png
src/main/resources/images/filechooser/previous_locations_title_image.png
src/main/resources/images/filechooser/remote_file_system.png
src/main/resources/images/filechooser/remote_file_system_selected.png
src/main/resources/images/filechooser/selected_file.png
src/main/resources/images/filechooser/selected_local_file_system.png
src/main/resources/images/filechooser/sort_ascending.png
src/main/resources/images/filechooser/sort_ascending_over.png
src/main/resources/images/filechooser/sort_descending.png
src/main/resources/images/filechooser/sort_descending_over.png
src/main/resources/images/filechooser/text_file.png
src/main/resources/images/filechooser/unknown_file_type.png
src/main/resources/images/filechooser/up_directory.png
src/main/resources/images/filechooser/up_directory_over.png
src/main/resources/images/filechooser/view_history.png
src/main/resources/images/filterablelistselector/close.png
src/main/resources/images/filterablelistselector/close_over.png
src/main/resources/images/filterablelistselector/selectProtocolHeader.png
src/main/resources/images/filterablelistselector/select_value.png
src/main/resources/images/formatmapper/BC_1.png
src/main/resources/images/formatmapper/BC_2.png
src/main/resources/images/formatmapper/BC_3.png
src/main/resources/images/formatmapper/BC_4.png
src/main/resources/images/formatmapper/BC_5.png
src/main/resources/images/formatmapper/BC_6.png
src/main/resources/images/formatmapper/BC_7.png
src/main/resources/images/formatmapper/assay_used_header.png
src/main/resources/images/formatmapper/bottom_left_curve.png
src/main/resources/images/formatmapper/bottom_right_curve.png
src/main/resources/images/formatmapper/column_mapper.png
src/main/resources/images/formatmapper/column_selector_header.png
src/main/resources/images/formatmapper/column_selector_header_inactive.png
src/main/resources/images/formatmapper/error.png
src/main/resources/images/formatmapper/fieldAddition/add-button-over.png
src/main/resources/images/formatmapper/fieldAddition/add-button.png
src/main/resources/images/formatmapper/fieldAddition/add-field-button-over.png
src/main/resources/images/formatmapper/fieldAddition/add-field-button.png
src/main/resources/images/formatmapper/fieldAddition/add-field-over.png
src/main/resources/images/formatmapper/fieldAddition/add-field.png
src/main/resources/images/formatmapper/fieldAddition/remove-field-over.png
src/main/resources/images/formatmapper/fieldAddition/remove-field.png
src/main/resources/images/formatmapper/help.png
src/main/resources/images/formatmapper/help_over.png
src/main/resources/images/formatmapper/info_image.png
src/main/resources/images/formatmapper/insert_mapping_header.png
src/main/resources/images/formatmapper/mapping_information.png
src/main/resources/images/formatmapper/mapping_normal_info.png
src/main/resources/images/formatmapper/mapping_overview_header.png
src/main/resources/images/formatmapper/mapping_viz_help.png
src/main/resources/images/formatmapper/nodes/mapped_node.png
src/main/resources/images/formatmapper/nodes/mapped_selected.png
src/main/resources/images/formatmapper/nodes/node_closed.png
src/main/resources/images/formatmapper/nodes/node_open.png
src/main/resources/images/formatmapper/nodes/remove.png
src/main/resources/images/formatmapper/nodes/unmapped_node.png
src/main/resources/images/formatmapper/nodes/unmapped_selected.png
src/main/resources/images/formatmapper/options.png
src/main/resources/images/formatmapper/paperClip.png
src/main/resources/images/formatmapper/perform_mapping_header.png
src/main/resources/images/formatmapper/popup_options.png
src/main/resources/images/formatmapper/problem_occurred.png
src/main/resources/images/formatmapper/save_mapping_info.png
src/main/resources/images/formatmapper/save_mappings.png
src/main/resources/images/formatmapper/save_mappings_header.png
src/main/resources/images/formatmapper/save_mappings_over.png
src/main/resources/images/formatmapper/select_button.png
src/main/resources/images/formatmapper/select_button_over.png
src/main/resources/images/formatmapper/select_file.png
src/main/resources/images/formatmapper/select_file_over.png
src/main/resources/images/formatmapper/select_files_header.png
src/main/resources/images/formatmapper/top_left_curve.png
src/main/resources/images/formatmapper/top_right_curve.png
src/main/resources/images/gs/back-over.png
src/main/resources/images/gs/back.png
src/main/resources/images/gs/cancel-over.png
src/main/resources/images/gs/cancel.png
src/main/resources/images/gs/choose-over.png
src/main/resources/images/gs/choose.png
src/main/resources/images/gs/genome-space-2-over.png
src/main/resources/images/gs/genome-space-2.png
src/main/resources/images/gs/genome-space-list-icon.png
src/main/resources/images/gs/genomespacelogo.png
src/main/resources/images/gs/gs_load.png
src/main/resources/images/gs/gs_logo.png
src/main/resources/images/gs/gs_save.png
src/main/resources/images/gs/load-selected-over.png
src/main/resources/images/gs/load-selected.png
src/main/resources/images/gs/new-folder-over.png
src/main/resources/images/gs/new-folder.png
src/main/resources/images/gs/okIcon.png
src/main/resources/images/gs/okIconOver.png
src/main/resources/images/gs/register.png
src/main/resources/images/gs/register_over.png
src/main/resources/images/gs/saveIcon.png
src/main/resources/images/gs/saveIconOver.png
src/main/resources/images/gs/saving_to_gs.gif
src/main/resources/images/gs/search-genome-space-over.png
src/main/resources/images/gs/search-genome-space.png
src/main/resources/images/gs/search-genomespace-over.png
src/main/resources/images/gs/search-genomespace.png
src/main/resources/images/gs/search-over.png
src/main/resources/images/gs/search.png
src/main/resources/images/gs/sso.png
src/main/resources/images/gs/sso_over.png
src/main/resources/images/gui/about.png
src/main/resources/images/gui/addRecordToSubform.png
src/main/resources/images/gui/addRecordToSubformOver.png
src/main/resources/images/gui/addStudyHeader.png
src/main/resources/images/gui/addstudy.png
src/main/resources/images/gui/addstudy_over.png
src/main/resources/images/gui/archive_created.png
src/main/resources/images/gui/archive_creation_failed.png
src/main/resources/images/gui/assay_help.png
src/main/resources/images/gui/assayinformation/button_panel_filler.png
src/main/resources/images/gui/assayinformation/clinical-chemistry.png
src/main/resources/images/gui/assayinformation/delete_button.png
src/main/resources/images/gui/assayinformation/delete_button_over.png
src/main/resources/images/gui/assayinformation/flow-cyt.png
src/main/resources/images/gui/assayinformation/gel-elec.png
src/main/resources/images/gui/assayinformation/generic.png
src/main/resources/images/gui/assayinformation/hematology.png
src/main/resources/images/gui/assayinformation/histology.png
src/main/resources/images/gui/assayinformation/mass-nmr.png
src/main/resources/images/gui/assayinformation/microarray.png
src/main/resources/images/gui/assayinformation/sequencing.png
src/main/resources/images/gui/assayinformation/view-assay-over.png
src/main/resources/images/gui/assayinformation/view-assay.png
src/main/resources/images/gui/back.png
src/main/resources/images/gui/config_list_item.png
src/main/resources/images/gui/confirm_remove_column.png
src/main/resources/images/gui/createISATABsubmissionMenu.png
src/main/resources/images/gui/createNewProfile.png
src/main/resources/images/gui/createProfileButton.png
src/main/resources/images/gui/create_archive_progress.gif
src/main/resources/images/gui/defaultActionIcon.png
src/main/resources/images/gui/dropDownImage.png
src/main/resources/images/gui/errorpage/back-arrow-over.png
src/main/resources/images/gui/errorpage/back-arrow.png
src/main/resources/images/gui/errorpage/forward-arrow-over.png
src/main/resources/images/gui/errorpage/forward-arrow.png
src/main/resources/images/gui/exit.png
src/main/resources/images/gui/exitImage.png
src/main/resources/images/gui/exit_Sml.png
src/main/resources/images/gui/exportArchive_Menu.png
src/main/resources/images/gui/feedback.png
src/main/resources/images/gui/fileMissingIcon.png
src/main/resources/images/gui/filePresentIcon.png
src/main/resources/images/gui/filechooser_openDirectory.png
src/main/resources/images/gui/filter_left.png
src/main/resources/images/gui/filter_right.png
src/main/resources/images/gui/fullScreenIcon.png
src/main/resources/images/gui/gotolocation.png
src/main/resources/images/gui/gotolocation_over.png
src/main/resources/images/gui/help.png
src/main/resources/images/gui/help/add_study_button.png
src/main/resources/images/gui/help/add_study_button_over.png
src/main/resources/images/gui/help/add_study_more.png
src/main/resources/images/gui/help/anatomy_isacreator_button.png
src/main/resources/images/gui/help/anatomy_isacreator_button_over.png
src/main/resources/images/gui/help/anatomy_isacreator_page.png
src/main/resources/images/gui/help/anatomy_isatab_button.png
src/main/resources/images/gui/help/anatomy_isatab_button_over.png
src/main/resources/images/gui/help/anatomy_isatab_page.png
src/main/resources/images/gui/help/create_first_study_button.png
src/main/resources/images/gui/help/create_first_study_button_over.png
src/main/resources/images/gui/info.png
src/main/resources/images/gui/informationHeader.png
src/main/resources/images/gui/investigationDataHeader.png
src/main/resources/images/gui/investigation_help.png
src/main/resources/images/gui/isa_load.gif
src/main/resources/images/gui/isacreator_icon.png
src/main/resources/images/gui/list_item_isa_file.png
src/main/resources/images/gui/loadISA.png
src/main/resources/images/gui/loadSelected.png
src/main/resources/images/gui/load_configuration.png
src/main/resources/images/gui/logout_lrg.png
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src/main/resources/images/wizard/BC_3.png
src/main/resources/images/wizard/BC_4.png
src/main/resources/images/wizard/BC_5.png
src/main/resources/images/wizard/BC_6.png
src/main/resources/images/wizard/addRecordToSubform.png
src/main/resources/images/wizard/completed.png
src/main/resources/images/wizard/completed_info.png
src/main/resources/images/wizard/defineStudy_info.png
src/main/resources/images/wizard/defineassay.png
src/main/resources/images/wizard/defineinvestigation.png
src/main/resources/images/wizard/definestudy.png
src/main/resources/images/wizard/exitwizard.png
src/main/resources/images/wizard/exitwizard_over.png
src/main/resources/images/wizard/overview.png
src/main/resources/images/wizard/removeButton.png
src/main/resources/images/wizard/selectTreatmentHeader.png
src/main/resources/images/wizard/spacer.png
src/main/resources/images/wizard/wizardLogo.png
src/main/resources/log4j.xml
src/main/resources/xsd/isatab_configuration.xsd
src/main/resources/xsd/saved_mapping.xsd
src/main/resources/xsd/xsd_schema_annotator.xsd
src/main/resources/xsd/xsd_schema_classBean.xsd
src/main/resources/xsd/xsd_schema_searchBean.xsd
src/main/xsdconfig/isatab_config.xsdconfig
src/test/java/org/isatools/isacreator/api/CreateProfileTest.java
src/test/java/org/isatools/isacreator/configuration/io/ConfigurationLoadTest.java
src/test/java/org/isatools/isacreator/io/ProgrammaticISATabCreationTest.java
src/test/java/org/isatools/isacreator/io/exportisa/OutputISAFilesTest.java
src/test/java/org/isatools/isacreator/io/importisa/ISAtabFilesImporterFromGUITest.java
src/test/java/org/isatools/isacreator/io/importisa/ISAtabFilesImporterTest.java
src/test/java/org/isatools/isacreator/io/importisa/InvestigationImportTest.java
src/test/java/org/isatools/isacreator/model/ContactTest.java
src/test/java/org/isatools/isacreator/model/ProtocolTest.java
src/test/java/org/isatools/isacreator/model/PublicationTest.java
src/test/java/org/isatools/isacreator/ontologiser/logic/impl/AnnotatorSearchClientTest.java
src/test/java/org/isatools/isacreator/ontologymanager/BioPortalClientTest.java
src/test/java/org/isatools/isacreator/ontologymanager/OLSClientTest.java
src/test/java/org/isatools/isacreator/publicationlocator/CiteXploreTest.java
src/test/resources/test-data/BII-I-1/a_metabolome.txt
src/test/resources/test-data/BII-I-1/a_microarray.txt
src/test/resources/test-data/BII-I-1/a_proteome.txt
src/test/resources/test-data/BII-I-1/a_transcriptome.txt
src/test/resources/test-data/BII-I-1/i_investigation.txt
src/test/resources/test-data/BII-I-1/s_BII-S-1.txt
src/test/resources/test-data/BII-I-1/s_BII-S-2.txt