Download jannovar Free Java Code

.gitignore/*w  w w  .  ja v  a2 s .co  m*/
.travis.yml
README
README.md
pom.xml
src/main/java/jannovar/Jannovar.java
src/main/java/jannovar/annotation/AnnotatedVariantFactory.java
src/main/java/jannovar/annotation/Annotation.java
src/main/java/jannovar/annotation/AnnotationList.java
src/main/java/jannovar/annotation/BlockSubstitution.java
src/main/java/jannovar/annotation/DeletionAnnotation.java
src/main/java/jannovar/annotation/InsertionAnnotation.java
src/main/java/jannovar/annotation/IntergenicAnnotation.java
src/main/java/jannovar/annotation/NoncodingAnnotation.java
src/main/java/jannovar/annotation/SingleNucleotideSubstitution.java
src/main/java/jannovar/annotation/SpliceAnnotation.java
src/main/java/jannovar/annotation/UTRAnnotation.java
src/main/java/jannovar/common/ChromosomMap.java
src/main/java/jannovar/common/Constants.java
src/main/java/jannovar/common/Disease.java
src/main/java/jannovar/common/FeatureType.java
src/main/java/jannovar/common/FilterType.java
src/main/java/jannovar/common/Genotype.java
src/main/java/jannovar/common/ModeOfInheritance.java
src/main/java/jannovar/common/VariantType.java
src/main/java/jannovar/exception/AnnotationException.java
src/main/java/jannovar/exception/ChromosomeScaffoldException.java
src/main/java/jannovar/exception/FeatureFormatException.java
src/main/java/jannovar/exception/FileDownloadException.java
src/main/java/jannovar/exception/IntervalTreeException.java
src/main/java/jannovar/exception/InvalidAttributException.java
src/main/java/jannovar/exception/JannovarException.java
src/main/java/jannovar/exception/KGParseException.java
src/main/java/jannovar/exception/PedParseException.java
src/main/java/jannovar/exception/VCFParseException.java
src/main/java/jannovar/exome/Variant.java
src/main/java/jannovar/exome/VariantTypeCounter.java
src/main/java/jannovar/genotype/GenotypeCall.java
src/main/java/jannovar/genotype/GenotypeFactoryA.java
src/main/java/jannovar/genotype/MultipleGenotypeFactory.java
src/main/java/jannovar/genotype/SingleGenotypeFactory.java
src/main/java/jannovar/gff/Feature.java
src/main/java/jannovar/gff/RNA2GeneIDMapper.java
src/main/java/jannovar/gff/TranscriptModelBuilder.java
src/main/java/jannovar/interval/Interval.java
src/main/java/jannovar/interval/IntervalTree.java
src/main/java/jannovar/interval/LeftComparator.java
src/main/java/jannovar/interval/Node.java
src/main/java/jannovar/interval/RightComparator.java
src/main/java/jannovar/io/EnsemblFastaParser.java
src/main/java/jannovar/io/FastaParser.java
src/main/java/jannovar/io/GFFparser.java
src/main/java/jannovar/io/PedFileParser.java
src/main/java/jannovar/io/RefSeqFastaParser.java
src/main/java/jannovar/io/RefSeqParser.java
src/main/java/jannovar/io/SerializationManager.java
src/main/java/jannovar/io/TranscriptDataDownloader.java
src/main/java/jannovar/io/TranscriptDataParser.java
src/main/java/jannovar/io/UCSCDownloader.java
src/main/java/jannovar/io/UCSCKGParser.java
src/main/java/jannovar/io/VCFLine.java
src/main/java/jannovar/io/VCFReader.java
src/main/java/jannovar/pedigree/Pedigree.java
src/main/java/jannovar/pedigree/Person.java
src/main/java/jannovar/reference/Chromosome.java
src/main/java/jannovar/reference/TranscriptModel.java
src/main/java/jannovar/reference/Translator.java
src/test/java/jannovar/annotation/BlockSubAnnotationTest.java
src/test/java/jannovar/annotation/DeletionAnnotationTest.java
src/test/java/jannovar/annotation/DownstreamAnnotationTest.java
src/test/java/jannovar/annotation/InsertionAnnotationTest.java
src/test/java/jannovar/annotation/IntergenicAnnotationTest.java
src/test/java/jannovar/annotation/IntronicAnnotationTest.java
src/test/java/jannovar/annotation/NoncodingRNAAnnotationTest.java
src/test/java/jannovar/annotation/NonsynonymousAnnotationTest.java
src/test/java/jannovar/annotation/SpliceAnnotationTest.java
src/test/java/jannovar/annotation/StopAnnotationTest.java
src/test/java/jannovar/annotation/SynonymousAnnotationTest.java
src/test/java/jannovar/annotation/UTR3AnnotationTest.java
src/test/java/jannovar/annotation/UTR5AnnotationTest.java
src/test/java/jannovar/annotation/UpstreamAnnotationTest.java
src/test/java/jannovar/exome/VariantTest.java
src/test/java/jannovar/gff/RNA2GeneIDMapperTest.java
src/test/java/jannovar/interval/IntervalTest.java
src/test/java/jannovar/interval/IntervalTreeTest.java
src/test/java/jannovar/interval/NodeTest.java
src/test/java/jannovar/io/GFFparserTest.java
src/test/java/jannovar/io/MultiSampleVCFReaderTest.java
src/test/java/jannovar/io/VCFLineTest.java
src/test/java/jannovar/io/VCFReaderTest.java
src/test/java/jannovar/pedigree/PedigreeADTest.java
src/test/java/jannovar/pedigree/PedigreeARTest.java
src/test/java/jannovar/reference/TranscriptModelTest.java
src/test/resources/MultiTestExome.vcf
src/test/resources/TestExome.vcf
src/test/resources/TestPedigreeAD.ped
src/test/resources/TestPedigreeAR.ped