Download SeqFilters Free Java Code
Description
Java filtering framework for sequence data.
Source Files
The download file SeqFilters-master.zip has the following entries.
.gitignore//from w ww .ja v a2 s .com
LICENSE
README
README.md
build.xml
ivy.xml
manifest.mf
nbproject/build-impl.xml
nbproject/genfiles.properties
nbproject/project.properties
nbproject/project.xml
src/edu/msu/cme/rdp/initprocess/InitProcessOutput.java
src/edu/msu/cme/rdp/initprocess/InitialProcessOptions.java
src/edu/msu/cme/rdp/initprocess/InitialProcessor.java
src/edu/msu/cme/rdp/initprocess/InitialProcessorMain.java
src/edu/msu/cme/rdp/seqfilter/SeqFilter.java
src/edu/msu/cme/rdp/seqfilter/SeqFilterChain.java
src/edu/msu/cme/rdp/seqfilter/SeqFilterResult.java
src/edu/msu/cme/rdp/seqfilter/SeqFilteringResult.java
src/edu/msu/cme/rdp/seqfilter/filters/CaseTransformFilter.java
src/edu/msu/cme/rdp/seqfilter/filters/CharReplaceFilter.java
src/edu/msu/cme/rdp/seqfilter/filters/ExpQualityFilter.java
src/edu/msu/cme/rdp/seqfilter/filters/NSeqFilter.java
src/edu/msu/cme/rdp/seqfilter/filters/PrimerFilter.java
src/edu/msu/cme/rdp/seqfilter/filters/RefSeqTrimmerFilter.java
src/edu/msu/cme/rdp/seqfilter/filters/SanityFilter.java
src/edu/msu/cme/rdp/seqfilter/filters/SeqLengthFilter.java
src/edu/msu/cme/rdp/seqfilter/filters/ValidAlphabetFilter.java
src/edu/msu/cme/rdp/seqfilter/output/SeqFilterFileOutput.java
src/edu/msu/cme/rdp/seqfilter/output/SeqFilterListOutput.java
src/edu/msu/cme/rdp/seqfilter/output/SeqFilterOutput.java
src/edu/msu/cme/rdp/seqfilter/utils/CommonGapBuilder.java
src/edu/msu/cme/rdp/seqfilter/utils/CommonGapRemover.java
src/edu/msu/cme/rdp/seqfilter/utils/TrimHelper.java
src/edu/msu/cme/rdp/seqfilter/utils/YankPrimers.java
test/edu/msu/cme/rdp/seqfilter/CaseTransformFilterTest.java
test/edu/msu/cme/rdp/seqfilter/CharReplaceFilterTest.java
test/edu/msu/cme/rdp/seqfilter/NSeqFilterTest.java
test/edu/msu/cme/rdp/seqfilter/PrimerFilterTest.java
test/edu/msu/cme/rdp/seqfilter/SeqLengthFilterTest.java
test/edu/msu/cme/rdp/seqfilter/ValidAlphabetFilterTest.java
test/edu/msu/cme/rdp/seqfilter/filters/ExpQualityFilterTest.java
test/edu/msu/cme/rdp/seqfilter/filters/SanityFilterTest.java
test/edu/msu/cme/rdp/seqfilter/utils/TrimHelperTest.java
Download
Click the following link to download SeqFilters-master.zip.
SeqFilters-master.zip