Download ARGBEAST Free Java Code
Description
BEAST 2 plugin providing limited support for ancestral recombination graphs a la ClonalOrigin.
Source Files
The download file ARGBEAST-master.zip has the following entries.
README.md//from w w w . j ava 2s . c o m
doc/model.tex
doc/operator_addremove.tex
doc/regionCount.pdf
doc/region_model.R
examples/normalTreeLikelihood.xml
lib/guava-15.0.jar
src/argbeast/Recombination.java
src/argbeast/RecombinationGraph.java
src/argbeast/model/GCCoalescentApprox.java
src/argbeast/model/RecombinationGraphLikelihood.java
src/argbeast/operators/AddRemoveRecombination.java
src/argbeast/operators/MoveConvertedRegion.java
src/argbeast/operators/MoveRecombinantEdge.java
src/argbeast/operators/RecombinationGraphOperator.java
test/argbeastTest/ChainResumptionTest.java
test/argbeastTest/GCCoalescentApproxTest.java
test/argbeastTest/RecombinationGraphLikelihoodTest.java
Download
Click the following link to download ARGBEAST-master.zip.
ARGBEAST-master.zip