Example usage for org.apache.shiro SecurityUtils getSubject

Introduction

In this page you can find the example usage for org.apache.shiro SecurityUtils getSubject.

Prototype

public static Subject getSubject() 

Source Link

Document

Returns the currently accessible Subject available to the calling code depending on runtime environment.

Usage

From source file:au.org.theark.phenotypic.web.component.phenodatadictionary.form.DetailForm.java

License:Open Source License

/**
 * Constructor/*from  w  ww.  j  a  va  2  s.co  m*/
 * 
 * @param id
 * @param cpModel
 * @param feedBackPanel
 * @param arkCrudContainerVO
 */
public DetailForm(String id, CompoundPropertyModel<PhenoDataSetFieldVO> cpModel, FeedbackPanel feedBackPanel,
        ArkCrudContainerVO arkCrudContainerVO) {
    super(id, feedBackPanel, cpModel, arkCrudContainerVO);
    cfGroupDdcListModel = new ListModel<PhenoDataSetGroup>();
    refreshEntityFromBackend();
    Long sessionModuleId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.ARK_MODULE_KEY);
    study = cpModel.getObject().getPhenoDataSetField().getStudy();
    //arkFunction=iArkCommonService.getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_SUBJECT_CUSTOM_FIELD_CATEGORY);
}

---

From source file:au.org.theark.phenotypic.web.component.phenodatadictionary.form.DetailForm.java

License:Open Source License

/**
 * Call this after the constructor is finished in detail panel.
 *//*from   www .  j av  a  2  s .co m*/
public void initialiseDetailForm() {
    Long sessionModuleId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.ARK_MODULE_KEY);
    arkModule = iArkCommonService.getArkModuleById(sessionModuleId);
    fieldIdTxtFld = new TextField<String>(Constants.FIELDVO_PHENODATASET_ID);
    fieldNameTxtFld = new TextField<String>(Constants.FIELDVO_PHENODATASET_NAME);
    fieldNameTxtFld.add(new ArkDefaultFormFocusBehavior());
    fieldDescriptionTxtAreaFld = new TextArea<String>(Constants.FIELDVO_PHENODATASET_DESCRIPTION);
    fieldLabelTxtAreaFld = new TextArea<String>(Constants.FIELDVO_PHENODATASET_FIELD_LABEL);
    //fieldMissingValueTxtFld = new TextField<String>(Constants.FIELDVO_CUSTOMFIELD_MISSING_VALUE);
    fieldDisplayRequiredChkBox = new CheckBox(Constants.FIELDVO_PHENODATASET_REQUIRED);
    fieldAllowMultiselectChkBox = new CheckBox(Constants.FIELDVO_PHENODATASET_ALLOW_MULTIPLE_SELECTION) {
        private static final long serialVersionUID = 1L;

        @Override
        public boolean isEnabled() {
            return (fieldEncodedValuesTxtFld.getModelObject() != null);
        }
    };

    fieldMultLineDisplayChkBox = new CheckBox(Constants.FIELDVO_PHENODATASET_MULTILINE_DISPLAY) {
        private static final long serialVersionUID = 1L;

        @Override
        public boolean isEnabled() {
            return (fieldEncodedValuesTxtFld.getModelObject() == null && (fieldTypeDdc.getModelObject() != null
                    && fieldTypeDdc.getModelObject().getName().equals(Constants.FIELD_TYPE_CHARACTER)));
        }
    };
    fieldMultLineDisplayChkBox.setEnabled(false);

    /*if (getModelObject().isUsePhenoDataSetFieldDisplay()) {
       // TODO: Have not implemented position support right now
       phenoDataSetDisplayPositionPanel = new EmptyPanel("phenoDataSetFieldDisplayPositionPanel");
    }
    else {
       phenoDataSetDisplayPositionPanel = new EmptyPanel("phenoDataSetFieldDisplayPositionPanel");
    }
    */
    phenoDataSetDisplayPositionPanel = new EmptyPanel("phenoDataSetFieldDisplayPositionPanel");
    // Initialise Drop Down Choices
    initFieldTypeDdc();
    initUnitTypeDdc();

    // Min and Max Value panels rely on fieldTypeDdc being already established
    minMaxValueEntryWMC = new WebMarkupContainer("minMaxValueEntryWMC");
    minMaxValueEntryWMC.setOutputMarkupPlaceholderTag(true);
    missingValueEntryWMC = new WebMarkupContainer("missingValueEntryWMC");
    missingValueEntryWMC.setOutputMarkupPlaceholderTag(true);

    defaultValueEntryWMC = new WebMarkupContainer("defaultValueEntryWMC");
    defaultValueEntryWMC.setOutputMarkupPlaceholderTag(true);

    // unitType and encodedValues rely on fieldTypeDdc being already established
    fieldEncodedValuesTxtFld = new TextArea<String>(Constants.FIELDVO_PHENODATASET_ENCODED_VALUES);
    fieldEncodedValuesTxtFld.setOutputMarkupId(true);
    fieldEncodedValuesTxtFld.add(new AjaxFormComponentUpdatingBehavior("onchange") {
        @Override
        protected void onUpdate(AjaxRequestTarget target) {
            target.add(fieldAllowMultiselectChkBox);
            target.add(fieldMultLineDisplayChkBox);
        }
    });

    updateEncodedValueFld();
    updateUnitTypeDdc();

    // Have to Edit, before allowing delete
    deleteButton.setEnabled(false);

    //defaultValueTextArea = new TextArea<String>(Constants.FIELDVO_PHENODATASET_DEFAULT_VALUE);

    addDetailFormComponents();
    attachValidators();

    initMinMaxValuePnls();

    historyButtonPanel = new HistoryButtonPanel(this, arkCrudContainerVO.getEditButtonContainer(),
            arkCrudContainerVO.getDetailPanelFormContainer(), feedBackPanel);

}

---

From source file:au.org.theark.phenotypic.web.component.phenodatadictionary.form.SearchForm.java

License:Open Source License

/**
 * @param id/*from   w w  w  .  j av  a 2s .c  o  m*/
 */
public SearchForm(String id, CompoundPropertyModel<PhenoDataSetFieldVO> cpModel, FeedbackPanel feedBackPanel,
        ArkCrudContainerVO arkCrudContainerVO) {
    super(id, cpModel, feedBackPanel, arkCrudContainerVO);
    //this.unitTypeDropDownOn = unitTypeDropDownOn;
    this.cpModel = cpModel;
    this.feedbackPanel = feedBackPanel;
    this.arkCrudContainerVO = arkCrudContainerVO;
    Long sessionModuleId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.ARK_MODULE_KEY);
    arkModule = iArkCommonService.getArkModuleById(sessionModuleId);
    //this.subjectCustomField = subjectCustomField;
    initialiseFieldForm();
    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    disableSearchForm(sessionStudyId, "There is no study in context. Please select a study");
}

---

From source file:au.org.theark.phenotypic.web.component.phenodatadictionary.form.SearchForm.java

License:Open Source License

@Override
protected void onSearch(AjaxRequestTarget target) {
    target.add(feedbackPanel);// w w w. jav a  2  s . co m
    final Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    // Get a list of all Fields for the Study in context
    Study study = iArkCommonService.getStudy(sessionStudyId);
    getModelObject().getPhenoDataSetField().setStudy(study);

    long count = iPhenotypicService.getPhenoFieldCount(getModelObject().getPhenoDataSetField());
    if (count <= 0L) {
        this.info("No records match the specified criteria.");
        target.add(feedbackPanel);
    }
    arkCrudContainerVO.getSearchResultPanelContainer().setVisible(true);
    target.add(arkCrudContainerVO.getSearchResultPanelContainer());
}

---

From source file:au.org.theark.phenotypic.web.component.phenodatadictionary.PhenoDataDictionaryContainerPanel.java

License:Open Source License

protected void prerenderContextCheck() {
    // Get the Study and Module out of context
    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Long sessionModuleId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.ARK_MODULE_KEY);

    if ((sessionStudyId != null) && (sessionModuleId != null)) {
        ArkModule arkModule = null;//  w  w  w. j  av  a2 s  .  c  o m
        Study study = null;
        study = iArkCommonService.getStudy(sessionStudyId);
        arkModule = iArkCommonService.getArkModuleById(sessionModuleId);

        if (study != null && arkModule != null) {
            cpModel.getObject().getPhenoDataSetField().setStudy(study);
            // TODO: Maybe check that the primary function supplied is of
            // the same module?
        }
    }
}

---

From source file:au.org.theark.phenotypic.web.component.phenodataentry.form.PhenoClinicalDataValueEntryModalDetailForm.java

License:Open Source License

private void initReviewedByDdc() {
    String sessionUserName = (String) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.ARK_USERID);
    ArkUser arkUser = null;/*from  ww  w. ja va  2s  .  com*/
    try {
        arkUser = iArkCommonService.getArkUser(sessionUserName);
    } catch (EntityNotFoundException e1) {
        e1.printStackTrace();
    }
    List<ArkUser> arkUserList = new ArrayList<ArkUser>(0);
    arkUserList = iArkCommonService.getArkUserListByStudy(arkUser,
            cpModel.getObject().getPhenoDataSetCollection().getLinkSubjectStudy().getStudy());
    ChoiceRenderer<ArkUser> choiceRenderer = new ChoiceRenderer<ArkUser>("ldapUserName", "id");
    reviewedByDdc = new DropDownChoice<ArkUser>("phenoDataSetCollection.reviewedBy", arkUserList,
            choiceRenderer);
}

---

From source file:au.org.theark.phenotypic.web.component.phenodataentry.form.PhenoCollectionListForm.java

License:Open Source License

@Override
public void onBeforeRender() {
    // Get session data (used for subject search)
    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    String sessionSubjectUID = (String) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.SUBJECTUID);

    if ((sessionStudyId != null) && (sessionSubjectUID != null)) {
        LinkSubjectStudy linkSubjectStudy = null;
        Study study = null;/*w  ww  .j  a  va2  s.c  om*/
        boolean contextLoaded = false;
        try {
            study = iArkCommonService.getStudy(sessionStudyId);
            linkSubjectStudy = iArkCommonService.getSubjectByUID(sessionSubjectUID, study);
            if (study != null && linkSubjectStudy != null) {
                contextLoaded = true;
            }
        } catch (EntityNotFoundException e) {
            log.error(e.getMessage());
        }

        if (contextLoaded) {
            // Successfully loaded from backend
            cpModel.getObject().getPhenoDataSetGroup().setStudy(study);
            cpModel.getObject().getPhenoDataSetCollection().setLinkSubjectStudy(linkSubjectStudy);
        }
    }

    super.onBeforeRender();
}

---

From source file:au.org.theark.phenotypic.web.component.phenodataentry.form.PhenoCollectionListForm.java

License:Open Source License

private void initialiseNewButton() {
    newButton = new ArkBusyAjaxButton(Constants.NEW) {

        private static final long serialVersionUID = 1L;

        @Override/*  www.  j  a v a2s  . c  o  m*/
        public boolean isVisible() {
            boolean isVisible = true;

            String sessionSubjectUID = (String) SecurityUtils.getSubject().getSession()
                    .getAttribute(au.org.theark.core.Constants.SUBJECTUID);
            isVisible = (ArkPermissionHelper.isActionPermitted(au.org.theark.core.Constants.NEW)
                    && sessionSubjectUID != null);

            return isVisible;
        }

        @Override
        protected void onSubmit(AjaxRequestTarget target, Form<?> form) {
            onNew(target);
        }

        @Override
        protected void onError(AjaxRequestTarget target, Form<?> form) {
            this.error("Unexpected error: Unable to proceed with New");
        }
    };
    newButton.setDefaultFormProcessing(false);

    add(newButton);
}

---

From source file:au.org.theark.phenotypic.web.component.phenodataentry.form.PhenoCollectionListForm.java

License:Open Source License

private void initialiseGetDataButton() {
    getDataButton = new AjaxButton("getData") {
        private static final long serialVersionUID = 1L;

        @Override//from w w w.  ja v  a2 s.c  om
        public boolean isEnabled() {
            return (true);
        }

        @Override
        public boolean isVisible() {
            boolean isVisible = true;
            String sessionSubjectUID = (String) SecurityUtils.getSubject().getSession()
                    .getAttribute(au.org.theark.core.Constants.SUBJECTUID);
            isVisible = (ArkPermissionHelper.isActionPermitted(au.org.theark.core.Constants.SEARCH)
                    && sessionSubjectUID != null);
            return isVisible;
        }

        @Override
        protected void onSubmit(AjaxRequestTarget target, Form<?> form) {
            if (phenoDataSetFieldGroupDdc.getValue().isEmpty()
                    || pickedPhenoDataSetCategoryDdc.getValue().isEmpty()) {
                error("Please select the Dataset and Category first");
            } else {
                LinkSubjectStudy linkSubjectStudy = cpModel.getObject().getPhenoDataSetCollection()
                        .getLinkSubjectStudy();
                List<PhenoDataSetGroup> phenoDataSetGroupList = new ArrayList<PhenoDataSetGroup>(0);
                PhenoDataSetGroup pdsg = iPhenotypicService
                        .getPhenoFieldGroupById(new Long(phenoDataSetFieldGroupDdc.getValue()));
                phenoDataSetGroupList.add(pdsg);
                PhenoDataSetCategory phenoDataSetCategory = iPhenotypicService
                        .getPhenoDataSetCategoryById(new Long(pickedPhenoDataSetCategoryDdc.getValue()));
                List<PhenoDataSetField> phenoSetFields = iPhenotypicService
                        .getPhenoDataSetFieldsLinkedToPhenoDataSetFieldGroupAndPhenoDataSetCategory(pdsg,
                                phenoDataSetCategory);
                List<String> subjectUids = new ArrayList<String>(0);
                subjectUids.add(linkSubjectStudy.getSubjectUID());
                List<List<String>> dataSet = iPhenotypicService.getPhenoDataAsMatrix(
                        linkSubjectStudy.getStudy(), subjectUids, phenoSetFields, phenoDataSetGroupList,
                        phenoDataSetCategory);
                phenoDataView = new DataTablePanel("phenoDataView", dataSet);
                PhenoCollectionListForm.this.addOrReplace(phenoDataView);
                target.add(phenoDataView);
            }
            target.add(feedbackPanel);
        }

        @Override
        protected void onError(AjaxRequestTarget target, Form<?> form) {
            this.error("Unexpected error: Unable to proceed with New");
            target.add(feedbackPanel);
        }
    };
    getDataButton.setDefaultFormProcessing(false);
    add(getDataButton);
}

---

From source file:au.org.theark.phenotypic.web.component.phenodataentry.PhenoCollectionDataEntryContainerPanel.java

License:Open Source License

protected boolean prerenderContextCheck() {
    // Get the Study, SubjectUID and ArkModule from Context
    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    String sessionSubjectUID = (String) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.SUBJECTUID);
    Long sessionArkModuleId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.ARK_MODULE_KEY);

    boolean contextLoaded = false;
    if ((sessionStudyId != null) && (sessionSubjectUID != null)) {
        LinkSubjectStudy linkSubjectStudy = null;
        ArkModule arkModule = null;//w  ww  . ja v  a2  s . co  m
        Study study = null;
        try {
            study = iArkCommonService.getStudy(sessionStudyId);
            linkSubjectStudy = iArkCommonService.getSubjectByUID(sessionSubjectUID, study);
            cpModel.getObject().getPhenoDataSetCollection().setLinkSubjectStudy(linkSubjectStudy);
            arkModule = iArkCommonService.getArkModuleById(sessionArkModuleId);
            if (study != null && linkSubjectStudy != null && arkModule != null) {
                contextLoaded = true;
                cpModel.getObject().setArkFunction(iArkCommonService.getArkFunctionByName(
                        au.org.theark.core.Constants.FUNCTION_KEY_VALUE_PHENO_COLLECTION));
            }
        } catch (EntityNotFoundException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        }
    }
    return contextLoaded;
}

---

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