Example usage for org.apache.shiro SecurityUtils getSubject

List of usage examples for org.apache.shiro SecurityUtils getSubject

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Introduction

In this page you can find the example usage for org.apache.shiro SecurityUtils getSubject.

Prototype

public static Subject getSubject()

Source Link

Document

Returns the currently accessible Subject available to the calling code depending on runtime environment.

Usage

From source file:au.org.theark.report.web.component.dataextraction.form.DetailForm.java

License:Open Source License

@SuppressWarnings("unchecked")
private void initBiospecimenCustomFieldDisplaysModulePalette() {
    CompoundPropertyModel<SearchVO> searchCPM = (CompoundPropertyModel<SearchVO>) containerForm.getModel();
    IChoiceRenderer<String> renderer = new ChoiceRenderer<String>("customField.name", "id");

    PropertyModel<Collection<CustomFieldDisplay>> selectedBiospecimenCustomFieldDisplaysPm = new PropertyModel<Collection<CustomFieldDisplay>>(
            searchCPM, "selectedBiospecimenCustomFieldDisplays");// "selectedDemographicFields");

    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(studyId);

    ArkFunction arkFunction = iArkCommonService
            .getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_LIMS_CUSTOM_FIELD);

    CustomFieldType customFieldType = iArkCommonService
            .getCustomFieldTypeByName(au.org.theark.core.Constants.BIOSPECIMEN);

    Collection<CustomFieldDisplay> availableBiospecimenCustomFieldDisplays = iArkCommonService
            .getCustomFieldDisplaysInLIMS(study, arkFunction, customFieldType);
    containerForm.getModelObject()//w w  w . j  a v a2  s .  c  o  m
            .setAvailableBiospecimenCustomFieldDisplays(availableBiospecimenCustomFieldDisplays);

    PropertyModel<Collection<CustomFieldDisplay>> availableBiospecimenCustomFieldDisplayPm = new PropertyModel<Collection<CustomFieldDisplay>>(
            searchCPM, "availableBiospecimenCustomFieldDisplays");
    biospecimenCustomFieldDisplaysToReturnPalette = new ArkPalette("selectedBiospecimenCustomFieldDisplays",
            selectedBiospecimenCustomFieldDisplaysPm, availableBiospecimenCustomFieldDisplayPm, renderer,
            PALETTE_ROWS, false);
    biospecimenCustomFieldDisplaysToReturnPalette.setOutputMarkupId(true);

}

From source file:au.org.theark.report.web.component.dataextraction.form.DetailForm.java

License:Open Source License

@SuppressWarnings("unchecked")
private void initBiocollectionCustomFieldDisplaysModulePalette() {
    CompoundPropertyModel<SearchVO> searchCPM = (CompoundPropertyModel<SearchVO>) containerForm.getModel();
    IChoiceRenderer<String> renderer = new ChoiceRenderer<String>("customField.name", "id");

    PropertyModel<Collection<CustomFieldDisplay>> selectedBiocollectionCustomFieldDisplaysPm = new PropertyModel<Collection<CustomFieldDisplay>>(
            searchCPM, "selectedBiocollectionCustomFieldDisplays");// "selectedDemographicFields");

    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(studyId);

    ArkFunction arkFunction = iArkCommonService
            .getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_LIMS_CUSTOM_FIELD);

    CustomFieldType customFieldType = iArkCommonService
            .getCustomFieldTypeByName(au.org.theark.core.Constants.BIOCOLLECTION);

    Collection<CustomFieldDisplay> availableBiocollectionCustomFieldDisplays = iArkCommonService
            .getCustomFieldDisplaysInLIMS(study, arkFunction, customFieldType);
    containerForm.getModelObject()//  ww  w . j  av a2  s .  c  o  m
            .setAvailableBiocollectionCustomFieldDisplays(availableBiocollectionCustomFieldDisplays);

    PropertyModel<Collection<CustomFieldDisplay>> availableBiocollectionCustomFieldDisplayPm = new PropertyModel<Collection<CustomFieldDisplay>>(
            searchCPM, "availableBiocollectionCustomFieldDisplays");
    biocollectionCustomFieldDisplaysToReturnPalette = new ArkPalette("selectedBiocollectionCustomFieldDisplays",
            selectedBiocollectionCustomFieldDisplaysPm, availableBiocollectionCustomFieldDisplayPm, renderer,
            PALETTE_ROWS, false);
    biocollectionCustomFieldDisplaysToReturnPalette.setOutputMarkupId(true);

}

From source file:au.org.theark.report.web.component.dataextraction.form.DetailForm.java

License:Open Source License

private void createSearchFile() {

    FileUpload fileSubjectFile = fileUploadField.getFileUpload();
    if (fileSubjectFile != null) {
        Long studyId = (Long) SecurityUtils.getSubject().getSession()
                .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
        Study study = iArkCommonService.getStudy(studyId);
        try {/*ww w  . j  av a  2s. c om*/
            if (containerForm.getModelObject().getSearchFile() == null) {
                containerForm.getModelObject().setSearchFile(new SearchFile());
            }
            // store search file attachment
            if (fileSubjectFile != null) {
                byte[] byteArray = fileSubjectFile.getMD5();
                String checksum = getHex(byteArray);
                containerForm.getModelObject().getSearchFile().setStudy(study);
                containerForm.getModelObject().getSearchFile()
                        .setSearch(containerForm.getModelObject().getSearch());
                containerForm.getModelObject().getSearchFile()
                        .setPayload(IOUtils.toByteArray(fileSubjectFile.getInputStream()));
                containerForm.getModelObject().getSearchFile().setFilename(fileSubjectFile.getClientFileName());
                containerForm.getModelObject().getSearchFile().setChecksum(checksum);
                containerForm.getModelObject().getSearchFile()
                        .setFileId(iArkCommonService.generateArkFileId(fileSubjectFile.getClientFileName()));
                containerForm.getModelObject().getSearchFile()
                        .setUserId(SecurityUtils.getSubject().getPrincipals().getPrimaryPrincipal().toString());
            }
            // Save
            reportService.create(containerForm.getModelObject().getSearchFile(),
                    au.org.theark.report.web.Constants.REPORT_DATA_EXTRACTION_SUBJECT_UID_RESTRICT_FILE);

        } catch (IOException ioe) {
            log.error("Failed to save the uploaded file: " + ioe);
        } catch (ArkSystemException e) {
            log.error("Failed to save the uploaded file: " + e);
        }
    }

}

From source file:au.org.theark.report.web.component.dataextraction.form.SearchForm.java

License:Open Source License

/**
 * //w  ww  .java  2  s.c om
 * @param id
 * @param cpmModel
 * @param arkCrudContainerVO
 * @param feedBackPanel
 * @param listView
 */
public SearchForm(String id, CompoundPropertyModel<SearchVO> cpmModel, ArkCrudContainerVO arkCrudContainerVO,
        FeedbackPanel feedBackPanel, PageableListView<Search> listView) {

    super(id, cpmModel, feedBackPanel, arkCrudContainerVO);
    this.arkCrudContainerVO = arkCrudContainerVO;
    this.feedbackPanel = feedBackPanel;
    this.listView = listView;

    initialiseSearchForm();
    addSearchComponentsToForm();
    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    //Add the study for model object not sure why ignores.................
    getModelObject().getSearch().setStudy(iArkCommonService.getStudy(sessionStudyId));
    disableSearchForm(sessionStudyId, "There is no study selected. Please select a study.");
}

From source file:au.org.theark.report.web.component.dataextraction.form.SearchForm.java

License:Open Source License

@Override
protected void onNew(AjaxRequestTarget target) {
    //      getModelObject().setMode(Constants.MODE_NEW);
    //      getModelObject().getStudyComponent().setId(null);

    SearchVO searchVo = new SearchVO();// containerForm.getModelObject();
    //searchVo.setMode(Constants.MODE_EDIT);
    searchVo.setSearch(new Search());// Sets the selected object into the model

    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(studyId);
    Search search = searchVo.getSearch();
    search.setStudy(study);//from www. ja v a  2  s  .  co m

    Collection<DemographicField> availableDemographicFields = iArkCommonService.getAllDemographicFields();
    this.getModelObject().setAvailableDemographicFields(availableDemographicFields);
    Collection<DemographicField> selectedDemographicFields = new ArrayList<DemographicField>();//iArkCommonService.getSelectedDemographicFieldsForSearch(search);//, true);
    this.getModelObject().setSelectedDemographicFields(selectedDemographicFields);

    Collection<BiospecimenField> availableBiospecimenFields = iArkCommonService.getAllBiospecimenFields();
    this.getModelObject().setAvailableBiospecimenFields(availableBiospecimenFields);
    Collection<BiospecimenField> selectedBiospecimenFields = new ArrayList<BiospecimenField>();//iArkCommonService.getSelectedBiospecimenFieldsForSearch(search);//, true);
    this.getModelObject().setSelectedBiospecimenFields(selectedBiospecimenFields);

    Collection<BiocollectionField> availableBiocollectionFields = iArkCommonService.getAllBiocollectionFields();
    this.getModelObject().setAvailableBiocollectionFields(availableBiocollectionFields);
    Collection<BiocollectionField> selectedBiocollectionFields = new ArrayList<BiocollectionField>();//iArkCommonService.getSelectedBiocollectionFieldsForSearch(search);//, true);
    this.getModelObject().setSelectedBiocollectionFields(selectedBiocollectionFields);

    ArkFunction arkFunctionPheno = iArkCommonService
            .getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_PHENO_COLLECTION);
    //ArkFunction arkFunctionBiocollection = iArkCommonService.getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_LIMS_COLLECTION);
    ArkFunction arkFunctionBiocollection = iArkCommonService
            .getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_LIMS_CUSTOM_FIELD);
    ArkFunction arkFunctionBiospecimen = iArkCommonService
            .getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_BIOSPECIMEN);
    ArkFunction arkFunctionSubject = iArkCommonService
            .getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_SUBJECT_CUSTOM_FIELD);

    Collection<PhenoDataSetFieldDisplay> availablePhenoDataSetFieldDisplays = iPhenoService
            .getPhenoFieldDisplaysIn(study, arkFunctionPheno);
    this.getModelObject().setAvailablePhenoDataSetFieldDisplays(availablePhenoDataSetFieldDisplays);
    Collection<PhenoDataSetFieldDisplay> selectedPhenoCustomFieldDisplays = new ArrayList<PhenoDataSetFieldDisplay>();//iArkCommonService.getSelectedPhenoCustomFieldDisplaysForSearch(search);//, true);
    this.getModelObject().setSelectedPhenoDataSetFieldDisplays(selectedPhenoCustomFieldDisplays);

    Collection<CustomFieldDisplay> availableSubjectCustomFieldDisplays = iArkCommonService
            .getCustomFieldDisplaysIn(study, arkFunctionSubject);
    this.getModelObject().setAvailableSubjectCustomFieldDisplays(availableSubjectCustomFieldDisplays);
    Collection<CustomFieldDisplay> selectedSubjectCustomFieldDisplays = new ArrayList<CustomFieldDisplay>();//iArkCommonService.getSelectedSubjectCustomFieldDisplaysForSearch(search);//, true);
    this.getModelObject().setSelectedSubjectCustomFieldDisplays(selectedSubjectCustomFieldDisplays);

    Collection<CustomFieldDisplay> availableBiocollectionCustomFieldDisplays = iArkCommonService
            .getCustomFieldDisplaysIn(study, arkFunctionBiocollection);
    this.getModelObject()
            .setAvailableBiocollectionCustomFieldDisplays(availableBiocollectionCustomFieldDisplays);
    Collection<CustomFieldDisplay> selectedBiocollectionCustomFieldDisplays = new ArrayList<CustomFieldDisplay>();//iArkCommonService.getSelectedBiocollectionCustomFieldDisplaysForSearch(search);//, true);
    this.getModelObject().setSelectedBiocollectionCustomFieldDisplays(selectedBiocollectionCustomFieldDisplays);

    Collection<CustomFieldDisplay> availableBiospecimenCustomFieldDisplays = iArkCommonService
            .getCustomFieldDisplaysIn(study, arkFunctionBiospecimen);
    this.getModelObject().setAvailableBiospecimenCustomFieldDisplays(availableBiospecimenCustomFieldDisplays);
    Collection<CustomFieldDisplay> selectedBiospecimenCustomFieldDisplays = new ArrayList<CustomFieldDisplay>();//iArkCommonService.getSelectedBiospecimenCustomFieldDisplaysForSearch(search);//, true);
    this.getModelObject().setSelectedBiospecimenCustomFieldDisplays(selectedBiospecimenCustomFieldDisplays);

    preProcessDetailPanel(target);
}

From source file:au.org.theark.report.web.component.dataextraction.SearchResultListPanel.java

License:Open Source License

@SuppressWarnings({ "unchecked", "serial" })
private AjaxLink buildLink(final Search search) {

    ArkBusyAjaxLink link = new ArkBusyAjaxLink("search.name") {

        @Override//ww  w.  ja va  2 s .c om
        public void onClick(AjaxRequestTarget target) {

            SearchVO searchVo = containerForm.getModelObject();
            //searchVo.setMode(Constants.MODE_EDIT);
            searchVo.setSearch(search);// Sets the selected object into the model

            Collection<DemographicField> availableDemographicFields = iArkCommonService
                    .getAllDemographicFields();
            containerForm.getModelObject().setAvailableDemographicFields(availableDemographicFields);
            Collection<DemographicField> selectedDemographicFields = iArkCommonService
                    .getSelectedDemographicFieldsForSearch(search);//, true);
            containerForm.getModelObject().setSelectedDemographicFields(selectedDemographicFields);

            Collection<ConsentStatusField> availableConsentStatusFields = iArkCommonService
                    .getAllConsentStatusFields();
            containerForm.getModelObject().setAvailableConsentStatusFields(availableConsentStatusFields);
            Collection<ConsentStatusField> selectedConsentStatusFields = iArkCommonService
                    .getSelectedConsentStatusFieldsForSearch(search);
            containerForm.getModelObject().setSelectedConsentStatusFields(selectedConsentStatusFields);

            Collection<BiospecimenField> availableBiospecimenFields = iArkCommonService
                    .getAllBiospecimenFields();
            containerForm.getModelObject().setAvailableBiospecimenFields(availableBiospecimenFields);
            Collection<BiospecimenField> selectedBiospecimenFields = iArkCommonService
                    .getSelectedBiospecimenFieldsForSearch(search);//, true);
            containerForm.getModelObject().setSelectedBiospecimenFields(selectedBiospecimenFields);

            Collection<BiocollectionField> availableBiocollectionFields = iArkCommonService
                    .getAllBiocollectionFields();
            containerForm.getModelObject().setAvailableBiocollectionFields(availableBiocollectionFields);
            Collection<BiocollectionField> selectedBiocollectionFields = iArkCommonService
                    .getSelectedBiocollectionFieldsForSearch(search);//, true);
            containerForm.getModelObject().setSelectedBiocollectionFields(selectedBiocollectionFields);

            Long studyId = (Long) SecurityUtils.getSubject().getSession()
                    .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
            Study study = iArkCommonService.getStudy(studyId);
            ArkFunction arkFunctionPheno = iArkCommonService
                    .getArkFunctionByName(Constants.FUNCTION_KEY_VALUE_DATA_DICTIONARY);
            ArkFunction arkFunctionLIMS = iArkCommonService
                    .getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_LIMS_CUSTOM_FIELD);
            CustomFieldType cusFldTypeBioCollection = iArkCommonService
                    .getCustomFieldTypeByName(au.org.theark.core.Constants.BIOCOLLECTION);
            CustomFieldType cusFldTypeBiospecimen = iArkCommonService
                    .getCustomFieldTypeByName(au.org.theark.core.Constants.BIOSPECIMEN);
            ArkFunction arkFunctionSubject = iArkCommonService
                    .getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_SUBJECT_CUSTOM_FIELD);

            SearchFile searchFile = reportService.getSearchFileByStudyAndSearch(study, search);
            containerForm.getModelObject().setSearchFile(searchFile);

            Collection<PhenoDataSetFieldDisplay> availablePhenoDataSetFieldDisplays = iPhenoService
                    .getPhenoFieldDisplaysIn(study, arkFunctionPheno);
            containerForm.getModelObject()
                    .setAvailablePhenoDataSetFieldDisplays(availablePhenoDataSetFieldDisplays);
            Collection<PhenoDataSetFieldDisplay> selectedPhenoDataSetFieldDisplays = iArkCommonService
                    .getSelectedPhenoDataSetFieldDisplaysForSearch(search);//, true);
            containerForm.getModelObject()
                    .setSelectedPhenoDataSetFieldDisplays(selectedPhenoDataSetFieldDisplays);

            Collection<CustomFieldDisplay> availableSubjectCustomFieldDisplays = iArkCommonService
                    .getCustomFieldDisplaysIn(study, arkFunctionSubject);
            containerForm.getModelObject()
                    .setAvailableSubjectCustomFieldDisplays(availableSubjectCustomFieldDisplays);
            Collection<CustomFieldDisplay> selectedSubjectCustomFieldDisplays = iArkCommonService
                    .getSelectedSubjectCustomFieldDisplaysForSearch(search);//, true);
            containerForm.getModelObject()
                    .setSelectedSubjectCustomFieldDisplays(selectedSubjectCustomFieldDisplays);

            Collection<CustomFieldDisplay> availableBiocollectionCustomFieldDisplays = iArkCommonService
                    .getCustomFieldDisplaysInLIMS(study, arkFunctionLIMS, cusFldTypeBioCollection);
            containerForm.getModelObject()
                    .setAvailableBiocollectionCustomFieldDisplays(availableBiocollectionCustomFieldDisplays);
            Collection<CustomFieldDisplay> selectedBiocollectionCustomFieldDisplays = iArkCommonService
                    .getSelectedLIMSCustomFieldDisplaysForSearchOnCustomFieldType(search,
                            cusFldTypeBioCollection);
            containerForm.getModelObject()
                    .setSelectedBiocollectionCustomFieldDisplays(selectedBiocollectionCustomFieldDisplays);

            Collection<CustomFieldDisplay> availableBiospecimenCustomFieldDisplays = iArkCommonService
                    .getCustomFieldDisplaysInLIMS(study, arkFunctionLIMS, cusFldTypeBiospecimen);
            containerForm.getModelObject()
                    .setAvailableBiospecimenCustomFieldDisplays(availableBiospecimenCustomFieldDisplays);
            Collection<CustomFieldDisplay> selectedBiospecimenCustomFieldDisplays = iArkCommonService
                    .getSelectedLIMSCustomFieldDisplaysForSearchOnCustomFieldType(search,
                            cusFldTypeBiospecimen);//, true);
            containerForm.getModelObject()
                    .setSelectedBiospecimenCustomFieldDisplays(selectedBiospecimenCustomFieldDisplays);
            //Update the Create Filter button.
            AjaxButton ajaxButton = (AjaxButton) arkCrudContainerVO.getDetailPanelFormContainer()
                    .get("createFilters");
            ajaxButton.add(new AttributeModifier("value", new Model<String>(
                    iArkCommonService.isAnyFilterAddedForSearch(search) ? "Edit Filters" : "Create Filters")));
            target.add(ajaxButton);
            target.add(arkCrudContainerVO.getDetailPanelFormContainer());
            // Render the UI
            ArkCRUDHelper.preProcessDetailPanelOnSearchResults(target, arkCrudContainerVO);
        }
    };

    // Add the label for the link
    Label nameLinkLabel = new Label("nameLbl", search.getName());
    link.add(nameLinkLabel);
    return link;

}

From source file:au.org.theark.report.web.component.dataextraction.SearchResultListPanel.java

License:Open Source License

private AjaxButton buildRunSearchButton(final Search search) {
    AjaxButton ajaxButton = new AjaxButton(au.org.theark.report.web.Constants.RUN_BATCH_QUERY) {

        private static final long serialVersionUID = 1L;

        @Override/*from   w  w w  .j a  va 2  s .  c  o  m*/
        protected void onSubmit(AjaxRequestTarget target, Form<?> form) {
            //TODO ASAP : this will be replaced by call to job
            //iArkCommonService.runSearch(search.getId());
            try {
                SecurityUtils.getSubject();
                search.setStartTime(new java.util.Date(System.currentTimeMillis()));
                search.setStatus("RUNNING");
                search.setFinishTime(null);
                iArkCommonService.update(search);
                String currentUser = SecurityUtils.getSubject().getPrincipals().getPrimaryPrincipal()
                        .toString();
                DataExtractionUploadExecutor task = new DataExtractionUploadExecutor(iArkCommonService,
                        search.getId(), currentUser);//, studyId);
                task.run();
                target.add(SearchResultListPanel.this);
                target.appendJavaScript(
                        "alert('Data files are being created as a background job. You may download when complete.');");
            } catch (Exception e) {
                // TODO Auto-generated catch block
                System.out.println("TODO: decent logging and handling" + e.getMessage());
                e.printStackTrace();
            } finally {
            }

        }

        @Override
        protected void onError(AjaxRequestTarget target, Form<?> form) {
            this.error("A system error occurred. Could not process download request");
        };

        @Override
        public boolean isVisible() {
            //TODO return correct status
            return search.getStatus() != null && !search.getStatus().equalsIgnoreCase("RUNNING");
            //return search.getStatus() != null && search.getStatus().equalsIgnoreCase("READY TO RUN") || true;
        }

    };

    //ajaxButton.setVisible(true);
    ajaxButton.setDefaultFormProcessing(false);
    //log.warn("\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n how many times is this run?");

    //TODO move back
    //if (upload.getPayload() == null)
    //if (data == null)
    //ajaxButton.setVisible(false);

    return ajaxButton;
}

From source file:au.org.theark.report.web.component.viewReport.consentDetails.filterForm.ConsentDetailsFilterForm.java

License:Open Source License

protected void onGenerateProcess(AjaxRequestTarget target) {

    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(sessionStudyId);
    cpModel.getObject().getLinkSubjectStudy().setStudy(study);

    String reportTitle = study.getName() + " - Study Component Consent Details Report";
    if (cpModel.getObject().getStudyComp() != null) {
        String studyComponent = cpModel.getObject().getStudyComp().getName();
        reportTitle += " - " + studyComponent;
    }//from   w  ww.j a va2s  .  c om

    ReportTemplate reportTemplate = cpModel.getObject().getSelectedReportTemplate();
    ReportOutputFormat reportOutputFormat = cpModel.getObject().getSelectedOutputFormat();

    // show report
    ServletContext context = ((WebApplication) getApplication()).getServletContext();
    File reportFile = null;

    reportFile = new File(context.getRealPath("/reportTemplates/" + reportTemplate.getTemplatePath()));
    JasperDesign design = null;
    JasperReport report = null;
    try {
        design = JRXmlLoader.load(reportFile);
        // System.out.println(" design -- created " );
        if (design != null) {
            design.setName(reportTitle); // set the output file name to match report title
            if (reportOutputFormat.getName().equals(au.org.theark.report.service.Constants.CSV_REPORT_FORMAT)) {
                design.setIgnorePagination(true); // don't paginate CSVs
            }
            report = JasperCompileManager.compileReport(design);
            // System.out.println(" design -- compiled " );
        }
    } catch (JRException e) {
        reportFile = null;
        e.printStackTrace();
    }
    // templateIS = getClass().getResourceAsStream("/reportTemplates/WebappReport.jrxml");
    final Map<String, Object> parameters = new HashMap<String, Object>();
    parameters.put("BaseDir", new File(context.getRealPath("/reportTemplates")));
    parameters.put("ReportTitle", reportTitle);
    Subject currentUser = SecurityUtils.getSubject();
    String userName = "(unknown)";
    if (currentUser.getPrincipal() != null) {
        userName = (String) currentUser.getPrincipal();
    }
    parameters.put("UserName", userName);
    ConsentDetailsReportDataSource reportDS = new ConsentDetailsReportDataSource(reportService,
            cpModel.getObject());

    JRResource reportResource = null;
    if (reportOutputFormat.getName().equals(au.org.theark.report.service.Constants.PDF_REPORT_FORMAT)) {
        final JRResource pdfResource = new JRConcreteResource<PdfResourceHandler>(new PdfResourceHandler());
        pdfResource.setJasperReport(report);
        pdfResource.setReportParameters(parameters).setReportDataSource(reportDS);
        // This code would emulate a file download as if clicked the user
        // clicked on the download link, but unfortunately it seems to
        // stuff up the Indicator (not hidden upon completion).
        // ResourceReference ref = new ResourceReference(study.getName() + "/" + report.getName() + "." + reportOutputFormat.getName()) {
        // protected Resource newResource() {
        // return pdfResource;
        // }
        // };
        // String url = getRequestCycle().urlFor(ref).toString();
        // getRequestCycle().setRequestTarget(new RedirectRequestTarget(url));
        // add(new ResourceLink<Void>("linkToPdf", pdfResource));
        reportResource = pdfResource;
    } else if (reportOutputFormat.getName().equals(au.org.theark.report.service.Constants.CSV_REPORT_FORMAT)) {
        final JRResource csvResource = new JRConcreteResource<CsvResourceHandler>(new CsvResourceHandler());
        csvResource.setJasperReport(report);
        csvResource.setReportParameters(parameters).setReportDataSource(reportDS);
        // This code would emulate a file download as if clicked the user
        // clicked on the download link, but unfortunately it seems to
        // stuff up the Indicator (not hidden upon completion).
        // ResourceReference ref = new ResourceReference(study.getName() + "/" + report.getName() + "." + reportOutputFormat.getName()) {
        // protected Resource newResource() {
        // return csvResource;
        // }
        // };
        // String url = getRequestCycle().urlFor(ref).toString();
        // getRequestCycle().setRequestTarget(new RedirectRequestTarget(url));
        // add(new ResourceLink<Void>("linkToCsv", csvResource));
        reportResource = csvResource;
    }
    if (reportResource != null) {
        reportOutputPanel.setReportResource(reportResource);
        reportOutputPanel.setVisible(true);
        target.add(reportOutputPanel);
    }
}

From source file:au.org.theark.report.web.component.viewReport.consentDetails.filterForm.ConsentDetailsFilterForm.java

License:Open Source License

protected void initialiseConsentCompDropDown() {
    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(sessionStudyId);

    List<StudyComp> consentStatusList = new ArrayList<StudyComp>(study.getStudyComps());
    ChoiceRenderer<StudyComp> defaultChoiceRenderer = new ChoiceRenderer<StudyComp>("name", "id");
    ddcStudyComp = new DropDownChoice<StudyComp>(Constants.STUDY_COMP, consentStatusList,
            defaultChoiceRenderer);/*  w  w w .ja  v a 2  s  .c  o  m*/
    ddcStudyComp.setRequired(true);
    add(ddcStudyComp);
}

From source file:au.org.theark.report.web.component.viewReport.phenoFieldDetails.filterForm.FieldDetailsFilterForm.java

License:Open Source License

protected void onGenerateProcess(AjaxRequestTarget target) {
    PhenoDataSetFieldDisplay cfd = cpModel.getObject().getPhenoDataSetFieldDisplay();
    Study study = cpModel.getObject().getStudy();
    String reportTitle = study.getName() + " - Phenotypic Field Details Report";
    if (cfd.getPhenoDataSetGroup() != null) {
        String questionnaire = cfd.getPhenoDataSetGroup().getName();
        reportTitle += " - " + questionnaire;
    }/*from  w w w.  j  a  v a  2s .  c om*/

    ReportTemplate reportTemplate = cpModel.getObject().getSelectedReportTemplate();
    ReportOutputFormat reportOutputFormat = cpModel.getObject().getSelectedOutputFormat();

    // show report
    ServletContext context = ((WebApplication) getApplication()).getServletContext();
    File reportFile = null;

    reportFile = new File(context.getRealPath("/reportTemplates/" + reportTemplate.getTemplatePath()));
    JasperDesign design = null;
    JasperReport report = null;
    try {
        design = JRXmlLoader.load(reportFile);
        // System.out.println(" design -- created " );
        if (design != null) {
            design.setName(reportTitle); // set the output file name to match report title
            if (reportOutputFormat.getName().equals(au.org.theark.report.service.Constants.CSV_REPORT_FORMAT)) {
                design.setIgnorePagination(true); // don't paginate CSVs
            }
            report = JasperCompileManager.compileReport(design);
            // System.out.println(" design -- compiled " );
        }
    } catch (JRException e) {
        reportFile = null;
        e.printStackTrace();
    }
    // templateIS = getClass().getResourceAsStream("/reportTemplates/WebappReport.jrxml");
    final Map<String, Object> parameters = new HashMap<String, Object>();
    parameters.put("BaseDir", new File(context.getRealPath("/reportTemplates")));
    parameters.put("ReportTitle", reportTitle);
    Subject currentUser = SecurityUtils.getSubject();
    String userName = "(unknown)";
    if (currentUser.getPrincipal() != null) {
        userName = (String) currentUser.getPrincipal();
    }
    parameters.put("UserName", userName);
    PhenoDataSetFieldDetailsReportDataSource reportDS = new PhenoDataSetFieldDetailsReportDataSource(
            reportService, cpModel.getObject());

    JRResource reportResource = null;
    if (reportOutputFormat.getName().equals(au.org.theark.report.service.Constants.PDF_REPORT_FORMAT)) {
        final JRResource pdfResource = new JRConcreteResource<PdfResourceHandler>(new PdfResourceHandler());
        pdfResource.setJasperReport(report);
        pdfResource.setReportParameters(parameters).setReportDataSource(reportDS);
        // This code would emulate a file download as if clicked the user
        // clicked on the download link, but unfortunately it seems to
        // stuff up the Indicator (not hidden upon completion).
        // ResourceReference ref = new ResourceReference(study.getName() + "/" + report.getName() + "." + reportOutputFormat.getName()) {
        // protected Resource newResource() {
        // return pdfResource;
        // }
        // };
        // String url = getRequestCycle().urlFor(ref).toString();
        // getRequestCycle().setRequestTarget(new RedirectRequestTarget(url));
        // add(new ResourceLink<Void>("linkToPdf", pdfResource));
        reportResource = pdfResource;
    } else if (reportOutputFormat.getName().equals(au.org.theark.report.service.Constants.CSV_REPORT_FORMAT)) {
        final JRResource csvResource = new JRConcreteResource<CsvResourceHandler>(new CsvResourceHandler());
        csvResource.setJasperReport(report);
        csvResource.setReportParameters(parameters).setReportDataSource(reportDS);
        // This code would emulate a file download as if clicked the user
        // clicked on the download link, but unfortunately it seems to
        // stuff up the Indicator (not hidden upon completion).
        // ResourceReference ref = new ResourceReference(study.getName() + "/" + report.getName() + "." + reportOutputFormat.getName()) {
        // protected Resource newResource() {
        // return csvResource;
        // }
        // };
        // String url = getRequestCycle().urlFor(ref).toString();
        // getRequestCycle().setRequestTarget(new RedirectRequestTarget(url));
        // add(new ResourceLink<Void>("linkToCsv", csvResource));
        reportResource = csvResource;
    }
    if (reportResource != null) {
        reportOutputPanel.setReportResource(reportResource);
        reportOutputPanel.setVisible(true);
        target.add(reportOutputPanel);
    }
}