Example usage for org.apache.shiro SecurityUtils getSubject

Introduction

In this page you can find the example usage for org.apache.shiro SecurityUtils getSubject.

Prototype

public static Subject getSubject() 

Source Link

Document

Returns the currently accessible Subject available to the calling code depending on runtime environment.

Usage

From source file:au.org.theark.registry.web.component.invoice.form.DetailForm.java

License:Open Source License

@Override
protected void onSave(Form<Pipeline> containerForm, AjaxRequestTarget target) {
    //   Long personSessionId = (Long) SecurityUtils.getSubject().getSession().getAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID);
    //StringBuffer feedBackMessageStr = new StringBuffer();
    Long studyId = (Long) SecurityUtils.getSubject().getSession().getAttribute(Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(studyId);
    containerForm.getModelObject().setStudy(study);
    if (containerForm.getModelObject() != null && containerForm.getModelObject().getId() == null) {

        iArkCommonService.createPipeline(containerForm.getModelObject());
        this.saveInformation();
        //this.info("Pipeline saved");
    } else {/*from w w  w .  j av  a  2  s  .  c  o  m*/
        iArkCommonService.updatePipeline(containerForm.getModelObject());
        this.updateInformation();
        //this.info("Pipeline updated");
    }

    target.add(feedBackPanel);
}

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From source file:au.org.theark.registry.web.component.invoice.form.SearchForm.java

License:Open Source License

public SearchForm(String id, CompoundPropertyModel<Pipeline> model, PageableListView<Pipeline> listView,
        FeedbackPanel feedBackPanel, ArkCrudContainerVO arkCrudContainerVO) {
    super(id, model, feedBackPanel, arkCrudContainerVO);
    this.cpmModel = model;
    this.listView = listView;
    initialiseFieldForm();/*from   w w  w. ja  v  a2  s .c o m*/

    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    disableSearchForm(sessionStudyId, "There is no study selected. Please select a study.");
}

---

From source file:au.org.theark.registry.web.component.invoice.ProcessResultListPanel.java

License:Open Source License

private AjaxLink buildLink(final Process process) {
    ArkBusyAjaxLink link = new ArkBusyAjaxLink("processLink") {
        @Override/* ww  w  .  ja v  a  2  s. co m*/
        public void onClick(AjaxRequestTarget target) {
            Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
                    .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
            //subject.getLinkSubjectStudy().setStudy(iArkCommonService.getStudy(sessionStudyId));

            //ArkCRUDHelper.preProcessDetailPanelOnSearchResults(target, arkCrudContainerVO);

            //POPUP FOR DETAILS
            //target.appendJavaScript("alert('popup for process details');");

            arkCrudContainerVO = new ArkCrudContainerVO();
            ProcessContainerForm processContainerForm = new ProcessContainerForm("content",
                    new CompoundPropertyModel<Process>(process));

            //add(processContainerForm);

            processDetailPanel = new ProcessDetailPanel("detailContainer", feedBackPanel, arkCrudContainerVO,
                    processContainerForm);
            processDetailPanel.initialisePanel();
            //processContainerForm.add(processDetailPanel);

            DetailPanel dp = new DetailPanel("content", feedBackPanel, arkCrudContainerVO, containerForm);
            dp.initialisePanel();
            PageableListView<Pipeline> listView = null;
            SearchPanel sp = new SearchPanel("content", feedBackPanel, listView, containerForm,
                    arkCrudContainerVO);
            sp.initialisePanel();

            //target.appendJavaScript("alert('Process : " + process.getName() + "');");
            List<ProcessInput> list = iArkCommonService.getProcessInputsForProcess(process);
            StringBuilder processInputDetails = new StringBuilder();
            for (Iterator iterator = list.iterator(); iterator.hasNext();) {
                ProcessInput processInput = (ProcessInput) iterator.next();
                processInputDetails.append("FileHash: ");
                processInputDetails.append(processInput.getInputFileHash());
                processInputDetails.append("<br>");
                processInputDetails.append("Input Location: ");
                processInputDetails.append(processInput.getinputFileLocation());
                processInputDetails.append("<br>");
                processInputDetails.append("File type: ");
                processInputDetails.append(processInput.getInputFileType());
                processInputDetails.append("<br>");
                processInputDetails.append("Input Kept: ");
                processInputDetails.append(processInput.getInputKept());
                processInputDetails.append("<br>");
                processInputDetails.append("Input Server: ");
                processInputDetails.append(processInput.getInputServer());
            }
            target.appendJavaScript("alert('ProcessInput Details : " + processInputDetails + "');");

            List<ProcessOutput> list2 = iArkCommonService.getProcessOutputsForProcess(process);
            StringBuilder processOutputDetails = new StringBuilder();
            for (Iterator iterator = list2.iterator(); iterator.hasNext();) {
                ProcessOutput processOutput = (ProcessOutput) iterator.next();
                processOutputDetails.append("File Location: ");
                processOutputDetails.append(processOutput.getOutputFileLocation());
                processOutputDetails.append("<br>");
                processOutputDetails.append("File Hash: ");
                processOutputDetails.append(processOutput.getOutputFileHash());
                processOutputDetails.append("<br>");
                processOutputDetails.append("File type: ");
                processOutputDetails.append(processOutput.getOutputFileType());
                processOutputDetails.append("<br>");
                processOutputDetails.append("Output Kept: ");
                processOutputDetails.append(processOutput.getOutputKept());
                processOutputDetails.append("<br>");
                processOutputDetails.append("Output Server: ");
                processOutputDetails.append(processOutput.getOutputServer());
            }
            target.appendJavaScript("alert('ProcessOutput Details : " + processOutputDetails + "');");

            // Set the modalWindow title and content
            //modalWindow.setTitle("Edit Process Details");
            //modalWindow.setContent(new EmptyPanel("content"));

            modalWindow.show(target);
            //            arkCrudContainerVO.getDetailPanelContainer().replaceWith(processDetailPanel);
            ArkCRUDHelper.preProcessDetailPanelOnSearchResults(target, arkCrudContainerVO);

        }
    };
    Label nameLinkLabel = new Label("process", process.getName());
    link.add(nameLinkLabel);
    return link;
}

---

From source file:au.org.theark.registry.web.component.invoice.SearchResultListPanel.java

License:Open Source License

private AjaxLink buildLink(final Pipeline pipeline) {
    ArkBusyAjaxLink link = new ArkBusyAjaxLink("pipelineLink") {
        @Override/*from  w w  w.j  a v  a2  s . c om*/
        public void onClick(AjaxRequestTarget target) {
            Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
                    .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
            //subject.getLinkSubjectStudy().setStudy(iArkCommonService.getStudy(sessionStudyId));

            containerForm.setModelObject(pipeline);

            ArkCRUDHelper.preProcessDetailPanelOnSearchResults(target, arkCrudContainerVO);
        }
    };
    Label nameLinkLabel = new Label("pipeline", pipeline.getName());
    link.add(nameLinkLabel);
    return link;
}

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From source file:au.org.theark.report.service.ReportServiceImpl.java

License:Open Source License

public List<Study> getStudyList() throws EntityNotFoundException {

    Study searchStudyCriteria = new Study();
    Subject currentUser = SecurityUtils.getSubject();
    ArkUser arkUser = arkCommonService.getArkUser(currentUser.getPrincipal().toString());
    ArkUserVO arkUserVo = new ArkUserVO();
    arkUserVo.setArkUserEntity(arkUser);
    arkUserVo.setStudy(searchStudyCriteria);
    return arkCommonService.getStudyListForUser(arkUserVo);
}

---

From source file:au.org.theark.report.web.component.dataextraction.DataExtractionContainerPanel.java

License:Open Source License

protected WebMarkupContainer initialiseSearchResults() {

    searchResultPanel = new SearchResultListPanel("searchResults", arkCrudContainerVO, containerForm);

    iModel = new LoadableDetachableModel<Object>() {
        private static final long serialVersionUID = 1L;

        @Override//  w w w. ja v  a 2s .  com
        protected Object load() {

            Long studySessionId = (Long) SecurityUtils.getSubject().getSession()
                    .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
            if (isActionPermitted() && studySessionId != null) {
                Study studyInContext = iArkCommonService.getStudy(studySessionId);
                cpModel.getObject().getSearch().setStudy(studyInContext);
                //containerForm.getModelObject().setListOfSearchesForResultList(iArkCommonService.getSearchesForThisStudy(studyInContext));
                containerForm.getModelObject().setListOfSearchesForResultList(
                        iArkCommonService.getSearchesForSearch(cpModel.getObject().getSearch()));
            }
            //pageableListView.removeAll();
            return containerForm.getModelObject().getListOfSearchesForResultList(); //.getStudyCompList();
        }
    };
    pageableListView = searchResultPanel.buildPageableListView(iModel);
    pageableListView.setReuseItems(true);
    AjaxPagingNavigator pageNavigator = new AjaxPagingNavigator("navigator", pageableListView);
    searchResultPanel.add(pageNavigator);
    searchResultPanel.add(pageableListView);
    searchResultPanel.setOutputMarkupId(true);
    arkCrudContainerVO.getSearchResultPanelContainer().add(searchResultPanel);
    return arkCrudContainerVO.getSearchResultPanelContainer();
}

---

From source file:au.org.theark.report.web.component.dataextraction.filter.form.QueryFilterForm.java

License:Open Source License

public QueryFilterForm(String id, IModel<QueryFilterListVO> model, ModalWindow modalWindowFilter,
        ModalWindow modalWindowEncoded, ArkCrudContainerVO arkCrudContainerVO) {
    super(id, model);
    Long studySessionId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    final Study study = iArkCommonService.getStudy(studySessionId);
    model.getObject().setStudy(study);/*from   ww w.  j a  v  a 2  s  . c o m*/

    List<QueryFilterVO> queryFilterVOs = iArkCommonService.getQueryFilterVOs(model.getObject().getSearch());
    model.getObject().setQueryFilterVOs(queryFilterVOs);

    //model.getObject().setQueryFilterVOs(iArkCommonService.getQueryFilter(search));
    this.feedbackPanel = new FeedbackPanel("feedback");
    feedbackPanel.setOutputMarkupId(true);
    setMultiPart(true);
    this.modalWindowFilter = modalWindowFilter;
    this.modalWindowEncoded = modalWindowEncoded;
    this.classModel = model;
    this.arkCrudContainerVO = arkCrudContainerVO;
    add(feedbackPanel);
}

---

From source file:au.org.theark.report.web.component.dataextraction.form.DetailForm.java

License:Open Source License

@Override
protected void onSave(Form<SearchVO> containerForm, AjaxRequestTarget target) {

    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(studyId);

    try {//from w  ww.  ja v a 2s .c  om

        containerForm.getModelObject().getSearch().setStudy(study);
        containerForm.getModelObject().getSearch().setStatus("READY TO RUN");
        containerForm.getModelObject().getSearch().setFinishTime(null);
        //Add to fix bug  ARK-1581 
        containerForm.getModelObject().getSearch().setIncludeGeno(false);

        FileUpload subjectFileUpload = fileUploadField.getFileUpload();
        List<SubjectVO> selectedSubjects = iArkCommonService.matchSubjectsFromInputFile(subjectFileUpload,
                study);

        if (containerForm.getModelObject().getSearch().getId() == null) {
            iArkCommonService.create(containerForm.getModelObject());
            iArkCommonService.createSearchSubjects(containerForm.getModelObject().getSearch(),
                    selectedSubjects);
            createSearchFile();
            this.saveInformation();
            //this.info("Search " + containerForm.getModelObject().getSearch().getName() + " was created successfully");
            processErrors(target);

        } else {
            iArkCommonService.update(containerForm.getModelObject());
            iArkCommonService.createSearchSubjects(containerForm.getModelObject().getSearch(),
                    selectedSubjects);
            createSearchFile();
            this.updateInformation();
            //this.info("Search " + containerForm.getModelObject().getSearch().getName() + " was updated successfully");
            processErrors(target);

        }

        onSavePostProcess(target);

    } catch (EntityExistsException e) {
        this.error("A search with the same name already exists for this study.");
        processErrors(target);
    }

}

---

From source file:au.org.theark.report.web.component.dataextraction.form.DetailForm.java

License:Open Source License

@SuppressWarnings("unchecked")
private void initPhenoDataSetFieldDisplaysModulePalette() {
    CompoundPropertyModel<SearchVO> searchCPM = (CompoundPropertyModel<SearchVO>) containerForm.getModel();
    IChoiceRenderer<String> renderer = new ChoiceRenderer<String>("descriptiveNameIncludingCFGName", "id");

    PropertyModel<Collection<PhenoDataSetFieldDisplay>> selectedPhenoDataSetFieldDisplaysPm = new PropertyModel<Collection<PhenoDataSetFieldDisplay>>(
            searchCPM, "selectedPhenoDataSetFieldDisplays");// "selectedDemographicFields");

    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(studyId); // Long arkFunctionId
    // = (Long)//from   w ww  . j  a v  a 2  s . co m
    // SecurityUtils.getSubject().getSession().getAttribute(au.org.theark.core.Constants.ARK_FUNCTION_KEY);
    ArkFunction arkFunction = iArkCommonService
            .getArkFunctionByName(Constants.FUNCTION_KEY_VALUE_DATA_DICTIONARY);

    Collection<PhenoDataSetFieldDisplay> availablePhenoDataSetFieldDisplays = iPhenoService
            .getPhenoFieldDisplaysIn(study, arkFunction); //iArkCommonService.getCustomFieldDisplaysIn(study, arkFunction);
    containerForm.getModelObject().setAvailablePhenoDataSetFieldDisplays(availablePhenoDataSetFieldDisplays);

    PropertyModel<Collection<PhenoDataSetFieldDisplay>> availablePhenoDataSetFieldDisplaysPm = new PropertyModel<Collection<PhenoDataSetFieldDisplay>>(
            searchCPM, "availablePhenoDataSetFieldDisplays");
    phenoDatasetFieldDisplaysToReturnPalette = new ArkPalette("selectedPhenoDataSetFieldDisplays",
            selectedPhenoDataSetFieldDisplaysPm, availablePhenoDataSetFieldDisplaysPm, renderer, PALETTE_ROWS,
            false);
    phenoDatasetFieldDisplaysToReturnPalette.setOutputMarkupId(true);
}

---

From source file:au.org.theark.report.web.component.dataextraction.form.DetailForm.java

License:Open Source License

@SuppressWarnings("unchecked")
private void initSubjectCustomFieldDisplaysModulePalette() {
    CompoundPropertyModel<SearchVO> searchCPM = (CompoundPropertyModel<SearchVO>) containerForm.getModel();
    IChoiceRenderer<String> renderer = new ChoiceRenderer<String>("customField.name", "id");

    PropertyModel<Collection<CustomFieldDisplay>> selectedSubjectCustomFieldDisplaysPm = new PropertyModel<Collection<CustomFieldDisplay>>(
            searchCPM, "selectedSubjectCustomFieldDisplays");// "selectedDemographicFields");

    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(studyId); // Long arkFunctionId
    // = (Long)//from w  ww. j av  a  2 s. c  om
    // SecurityUtils.getSubject().getSession().getAttribute(au.org.theark.core.Constants.ARK_FUNCTION_KEY);
    ArkFunction arkFunction = iArkCommonService
            .getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_SUBJECT_CUSTOM_FIELD);

    Collection<CustomFieldDisplay> availableSubjectCustomFieldDisplays = iArkCommonService
            .getCustomFieldDisplaysIn(study, arkFunction);
    containerForm.getModelObject().setAvailableSubjectCustomFieldDisplays(availableSubjectCustomFieldDisplays);

    PropertyModel<Collection<CustomFieldDisplay>> availableSubjectCustomFieldDisplayPm = new PropertyModel<Collection<CustomFieldDisplay>>(
            searchCPM, "availableSubjectCustomFieldDisplays");
    subjectCustomFieldDisplaysToReturnPalette = new ArkPalette("selectedSubjectCustomFieldDisplays",
            selectedSubjectCustomFieldDisplaysPm, availableSubjectCustomFieldDisplayPm, renderer, PALETTE_ROWS,
            false);
    subjectCustomFieldDisplaysToReturnPalette.setOutputMarkupId(true);

}

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