Example usage for org.apache.shiro SecurityUtils getSubject

List of usage examples for org.apache.shiro SecurityUtils getSubject

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Introduction

In this page you can find the example usage for org.apache.shiro SecurityUtils getSubject.

Prototype

public static Subject getSubject()

Source Link

Document

Returns the currently accessible Subject available to the calling code depending on runtime environment.

Usage

From source file:au.org.theark.disease.web.component.disease.form.DetailForm.java

License:Open Source License

protected void onCancel(AjaxRequestTarget target) {
    Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(sessionStudyId);
    DiseaseVO diseaseVO = new DiseaseVO();
    diseaseVO.getDisease().setStudy(study);
    containerForm.setModelObject(diseaseVO);
}

From source file:au.org.theark.disease.web.component.disease.form.DetailForm.java

License:Open Source License

@Override
protected void onSave(Form<DiseaseVO> containerForm, AjaxRequestTarget target) {
    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    if (studyId == null) {
        // No study in context
        this.error("There is no study selected. Please select a study to manage diseases.");
        processErrors(target);/*from w ww. j  a  v  a  2 s .com*/
    } else {
        Disease disease = containerForm.getModelObject().getDisease();
        disease.setStudy(iArkCommonService.getStudy(studyId));

        disease.setGenes(new HashSet<Gene>(containerForm.getModelObject().getSelectedGenes()));
        disease.setCustomFields(
                new HashSet<CustomField>(containerForm.getModelObject().getSelectedCustomFields()));

        if (isNew()) {
            iArkDiseaseService.save(disease);
        } else {
            iArkDiseaseService.update(disease);
        }

        //Populating containerForm's Model Object for next render.
        List<Gene> availableGenes = iArkDiseaseService.getAvailableGenesForStudy(disease.getStudy());
        List<Gene> selectedGenes = new ArrayList<Gene>(disease.getGenes());

        CustomField criteria = new CustomField();
        criteria.setStudy(disease.getStudy());
        criteria.setArkFunction(iArkCommonService
                .getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_DISEASE_CUSTOM_FIELDS));
        List<CustomField> selectedCustomFields = new ArrayList<CustomField>(disease.getCustomFields());
        List<CustomField> availableCustomFields = iArkCommonService.getCustomFieldList(criteria);

        containerForm.getModelObject().setAvailableGenes(availableGenes);
        containerForm.getModelObject().setSelectedGenes(selectedGenes);
        containerForm.getModelObject().setAvailableCustomFields(availableCustomFields);
        containerForm.getModelObject().setSelectedCustomFields(selectedCustomFields);

        target.add(arkCrudContainerVO.getDetailPanelContainer());
    }
}

From source file:au.org.theark.disease.web.component.disease.SearchResultListPanel.java

License:Open Source License

private AjaxLink buildLink(final DiseaseVO disease) {
    ArkBusyAjaxLink link = new ArkBusyAjaxLink("disease.name.link") {
        @Override/*w w w . j a  va  2  s. c  om*/
        public void onClick(AjaxRequestTarget target) {
            Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
                    .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);

            Study study = iArkCommonService.getStudy(sessionStudyId);
            List<Gene> availableGenes = iArkDiseaseService.getAvailableGenesForStudy(study);
            List<Gene> selectedGenes = new ArrayList<Gene>(disease.getDisease().getGenes());

            CustomField criteria = new CustomField();
            criteria.setStudy(study);
            criteria.setArkFunction(iArkCommonService.getArkFunctionByName(
                    au.org.theark.core.Constants.FUNCTION_KEY_VALUE_DISEASE_CUSTOM_FIELDS));
            List<CustomField> selectedCustomFields = new ArrayList<CustomField>(
                    disease.getDisease().getCustomFields());
            List<CustomField> availableCustomFields = iArkCommonService.getCustomFieldList(criteria);

            ArkCRUDHelper.preProcessDetailPanelOnSearchResults(target, arkCrudContainerVO);
            containerForm.setModelObject(disease);
            containerForm.getModelObject().setAvailableGenes(availableGenes);
            containerForm.getModelObject().setSelectedGenes(selectedGenes);
            containerForm.getModelObject().setAvailableCustomFields(availableCustomFields);
            containerForm.getModelObject().setSelectedCustomFields(selectedCustomFields);
        }
    };
    Label nameLinkLabel = new Label("disease.name", disease.getDisease().getName());
    link.add(nameLinkLabel);
    return link;
}

From source file:au.org.theark.disease.web.component.gene.SearchResultListPanel.java

License:Open Source License

private AjaxLink buildLink(final GeneVO geneVO) {
    ArkBusyAjaxLink link = new ArkBusyAjaxLink("disease.name") {
        @Override//from ww  w  .  ja  v  a 2s.  co m
        public void onClick(AjaxRequestTarget target) {
            Long sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
                    .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);

            List<Disease> availableDiseases = iArkDiseaseService
                    .getAvailableDiseasesForStudy(iArkCommonService.getStudy(sessionStudyId));
            List<Disease> selectedDiseases = new ArrayList<Disease>(geneVO.getGene().getDiseases());

            ArkCRUDHelper.preProcessDetailPanelOnSearchResults(target, arkCrudContainerVO);
            containerForm.setModelObject(geneVO);
            containerForm.getModelObject().setAvailableDiseases(availableDiseases);
            containerForm.getModelObject().setSelectedDiseases(selectedDiseases);

        }
    };
    Label nameLinkLabel = new Label("gene.name", geneVO.getGene().getName());
    link.add(nameLinkLabel);
    return link;
}

From source file:au.org.theark.geno.web.component.table.GenoTableContainerPanel.java

License:Open Source License

@SuppressWarnings("unchecked")
protected void prerenderContextCheck() {
    sessionPersonId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID);
    sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);

    if ((sessionStudyId != null) && (sessionPersonId != null)) {
        String sessionPersonType = (String) SecurityUtils.getSubject().getSession()
                .getAttribute(au.org.theark.core.Constants.PERSON_TYPE);

        if (sessionPersonType.equals(au.org.theark.core.Constants.PERSON_CONTEXT_TYPE_SUBJECT)) {
            Person person;//w  w  w  .j ava  2  s  . com
            boolean contextLoaded = false;
            try {
                person = studyService.getPerson(sessionPersonId);
                Study study = iArkCommonService.getStudy(sessionStudyId);
                contextLoaded = true;
            } catch (EntityNotFoundException e) {
                log.error(e.getMessage());
            } catch (ArkSystemException e) {
                log.error(e.getMessage());
            }
            if (contextLoaded) {
                arkCrudContainerVO.getDetailPanelContainer().setVisible(true);
            }
        }
    }
}

From source file:au.org.theark.geno.web.component.tableeditor.TableEditorContainerPanel.java

License:Open Source License

@SuppressWarnings("unchecked")
protected void prerenderContextCheck() {
    // Get the Person in Context and determine the Person Type
    sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    log.info("sessionStudyID: " + sessionStudyId);
    if (sessionStudyId != null) {
        Study study = iArkCommonService.getStudy(sessionStudyId);
        arkCrudContainerVO.getDetailPanelContainer().setVisible(true);
    }//from   ww  w. jav  a 2  s.c o  m
}

From source file:au.org.theark.lims.util.BioCustomFieldUploadValidator.java

License:Open Source License

public BioCustomFieldUploadValidator() {
    super();/*from ww w .j a v  a2  s. com*/
    Subject currentUser = SecurityUtils.getSubject();
    studyId = (Long) currentUser.getSession().getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    this.study = iArkCommonService.getStudy(studyId);
    this.existantSubjectUIDRows = new HashSet<Integer>();
    this.nonExistantUIDs = new HashSet<Integer>();
    this.errorCells = new HashSet<ArkGridCell>();
    simpleDateFormat.setLenient(false);
}

From source file:au.org.theark.lims.util.BioCustomFieldUploadValidator.java

License:Open Source License

@SuppressWarnings("unchecked")
public BioCustomFieldUploadValidator(IArkCommonService iArkCommonService, ILimsService iLimsService) {
    super();/*from  w w w  .ja  va 2s  . com*/
    this.iArkCommonService = iArkCommonService;
    this.iLimsService = iLimsService;
    Subject currentUser = SecurityUtils.getSubject();
    studyId = (Long) currentUser.getSession().getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    this.study = iArkCommonService.getStudy(studyId);
    this.existantSubjectUIDRows = new HashSet<Integer>();
    this.nonExistantUIDs = new HashSet<Integer>();
    this.errorCells = new HashSet<ArkGridCell>();
    simpleDateFormat.setLenient(false);
}

From source file:au.org.theark.lims.util.BiospecimenUploadReport.java

License:Open Source License

public void appendDetails(Upload studyUpload) {
    append("Study: ");
    appendAndNewLine(studyUpload.getStudy().getName());
    append("User ID: ");
    appendAndNewLine(SecurityUtils.getSubject().getPrincipal().toString());
    append("Filename: ");
    appendAndNewLine(studyUpload.getFilename());
    append("File Format: ");
    appendAndNewLine(studyUpload.getFileFormat().getName());
    append("Delimiter Type ");
    appendAndNewLine(studyUpload.getDelimiterType().getName());
}

From source file:au.org.theark.lims.util.SubjectUploadReport.java

License:Open Source License

public void appendDetails(Upload studyUpload, String studyName) {
    append("Study: ");
    appendAndNewLine(studyName);/*from  www. j  av a  2  s  .  com*/
    append("UserID: ");
    appendAndNewLine(SecurityUtils.getSubject().getPrincipal().toString());
    append("Filename: ");
    appendAndNewLine(studyUpload.getFilename());
    append("File Format: ");
    appendAndNewLine(studyUpload.getFileFormat().getName());
    append("Delimiter Type ");
    appendAndNewLine(studyUpload.getDelimiterType().getName());
}